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Homology
BLAST of mRNA_L-elsbetiae_contig934.18339.1 vs. uniprot
Match: A0A6H5JU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU30_9PHAE) HSP 1 Score: 449 bits (1156), Expect = 2.580e-151 Identity = 254/372 (68.28%), Postives = 281/372 (75.54%), Query Frame = 1
Query: 46 MAYEALIVIGFGVSLAVVSVALFVAHVKRINAPNRADPTGIVVDIDLGAALAKDEAARNRKASGRKSAGDDCGGKLSGVA--DRGAFALQQQSVDRRRRRPGA-TREGVDEGREDTAVDRVDGATSTIDGTQ--EAPPPTYTASMVLPSPLWAEAFVKYADVKRKQLRSMVKGGEIAAGWEAKWERLSLPRRRKLLEAVREELVHAVSSYVGRDEGLFDAVCPNLSVGVLEEDHRGISGLSRLVRGCLDGKLPEPRSKAFLAVQEALAKASV--------ETTPKDRRAPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGTAGPTVGSVCSALVKTSGSGILMYAFFHGLKQMSASEVADSAGLPAGVGGG 1122
M YEALIV+ FGV+LAV SVALF+AHVKRINAPNRADP G +V +DLGAALAKDEAA A AFALQ RRRRRP T G + V G D Q EA +YTA+MVLPSPLWAEA +K+A+VKRK+LRSMVK GEIAAGWEAKWERL PRRRKLLEAVREELVHAVSSY+GRDE LFD +CP+LS+ LEE+HRGISGLSRLVRGC+DGKLPEPRSKAF+AV++ALA A+ E KD+R PVRAFLPTFRKLCSSSFCIGALEAIVSGRADG+AGPTVGSVCSALVKT GSG+L++AFFHGLKQMSASEV DSAGLPAGVGGG
Sbjct: 1 MTYEALIVVVFGVALAVASVALFIAHVKRINAPNRADPAGTLVHVDLGAALAKDEAAAXXXXXXXXXXXXXXXXXXDSSAGCSGDAFALQPNGAARRRRRPSVETANRCAHGSQQETAAAV-GTQQPTDTQQPREAGASSYTATMVLPSPLWAEAILKHAEVKRKKLRSMVKSGEIAAGWEAKWERLPRPRRRKLLEAVREELVHAVSSYIGRDEALFDVICPHLSLSALEEEHRGISGLSRLVRGCMDGKLPEPRSKAFVAVRDALAMAATGAAAAAAAENVSKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFHGLKQMSASEVTDSAGLPAGVGGG 371
BLAST of mRNA_L-elsbetiae_contig934.18339.1 vs. uniprot
Match: D8LCX7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX7_ECTSI) HSP 1 Score: 421 bits (1083), Expect = 2.890e-140 Identity = 241/358 (67.32%), Postives = 270/358 (75.42%), Query Frame = 1
Query: 46 MAYEALIVIGFGVSLAVVSVALFVAHVKRINAPNRADPTGIVVDIDLGAALAKDEAARNRKASGRK-------SAGDDCGGKLSGVADRGAFALQQQSVDRRRRRPGA-TREGVDEGREDTAVDRVDGATSTIDGTQ--EAPPPTYTASMVLPSPLWAEAFVKYADVKRKQLRSMVKGGEIAAGWEAKWERLSLPRRRKLLEAVREELVHAVSSYVGRDEGLFDAVCPNLSVGVLEEDHRGISGLSRLVRGCLDGKLPEPRSKAFLAVQEALAKASV--------ETTPKDRRAPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGTAGPTVGSVCSALVKTSGSGILMYAFFHGLKQ 1065
M YEALIVIGFGV+LAV SVALFVAHVKRINAPNRADP G +V +DLGAALAKDEA ++ D+ G R AFALQ RRR+RP T EG + V G D Q EA +YTA+MVLPSPLWAEA +K+ADVKRK+LRSMVK GEIAAGWEAKWERL PR+RKLLEAV+EELVHAVSSY+GRD+ LFDA+CP+LSV LEE+HRGISGLSRLVRGCLDGKL EPRSKAF AV++ALAKA++ E PKD+R PVRAFLPTFRKLCSSSFCIGALEAIVSGRADG+AGPTVGSVCSALVKT GSG+L++AFF GLKQ
Sbjct: 33 MTYEALIVIGFGVALAVASVALFVAHVKRINAPNRADPAGTLVHVDLGAALAKDEAXXXXXXXXXXXXXXXXXTSEDNSAG-----CSRDAFALQPNGAARRRKRPSVETANRCAEGSQQETAAAV-GTQQPADTQQAREAGTSSYTATMVLPSPLWAEAILKHADVKRKKLRSMVKSGEIAAGWEAKWERLPRPRKRKLLEAVKEELVHAVSSYIGRDDALFDAICPHLSVSALEEEHRGISGLSRLVRGCLDGKLSEPRSKAFAAVRDALAKAAIGAAAAAAAENVPKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFLGLKQ 384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-01_001440.1 |
Exons | 4 |
Model size | 1800 |
Cds size | 1083 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817003.6542418-UTR-L-elsbetiae_contig934:13965..14637 | 1622817003.6542418-UTR-L-elsbetiae_contig934:13965..14637 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig934 13966..14637 - |
1691683975.624774-UTR-L-elsbetiae_contig934:13965..14637 | 1691683975.624774-UTR-L-elsbetiae_contig934:13965..14637 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig934 13966..14637 - |
1622817003.7227323-UTR-L-elsbetiae_contig934:17402..17447 | 1622817003.7227323-UTR-L-elsbetiae_contig934:17402..17447 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig934 17403..17447 - |
1691683975.6808922-UTR-L-elsbetiae_contig934:17402..17447 | 1691683975.6808922-UTR-L-elsbetiae_contig934:17402..17447 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig934 17403..17447 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817003.67107-CDS-L-elsbetiae_contig934:14637..14833 | 1622817003.67107-CDS-L-elsbetiae_contig934:14637..14833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 14638..14833 - |
1691683975.6362138-CDS-L-elsbetiae_contig934:14637..14833 | 1691683975.6362138-CDS-L-elsbetiae_contig934:14637..14833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 14638..14833 - |
1622817003.6843195-CDS-L-elsbetiae_contig934:15315..15552 | 1622817003.6843195-CDS-L-elsbetiae_contig934:15315..15552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 15316..15552 - |
1691683975.649536-CDS-L-elsbetiae_contig934:15315..15552 | 1691683975.649536-CDS-L-elsbetiae_contig934:15315..15552 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 15316..15552 - |
1622817003.696776-CDS-L-elsbetiae_contig934:16303..16566 | 1622817003.696776-CDS-L-elsbetiae_contig934:16303..16566 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 16304..16566 - |
1691683975.6609957-CDS-L-elsbetiae_contig934:16303..16566 | 1691683975.6609957-CDS-L-elsbetiae_contig934:16303..16566 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 16304..16566 - |
1622817003.7087421-CDS-L-elsbetiae_contig934:17015..17402 | 1622817003.7087421-CDS-L-elsbetiae_contig934:17015..17402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 17016..17402 - |
1691683975.6720035-CDS-L-elsbetiae_contig934:17015..17402 | 1691683975.6720035-CDS-L-elsbetiae_contig934:17015..17402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig934 17016..17402 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig934.18339.1 >prot_L-elsbetiae_contig934.18339.1 ID=prot_L-elsbetiae_contig934.18339.1|Name=mRNA_L-elsbetiae_contig934.18339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=361bp
MAYEALIVIGFGVSLAVVSVALFVAHVKRINAPNRADPTGIVVDIDLGAA LAKDEAARNRKASGRKSAGDDCGGKLSGVADRGAFALQQQSVDRRRRRPG ATREGVDEGREDTAVDRVDGATSTIDGTQEAPPPTYTASMVLPSPLWAEA FVKYADVKRKQLRSMVKGGEIAAGWEAKWERLSLPRRRKLLEAVREELVH AVSSYVGRDEGLFDAVCPNLSVGVLEEDHRGISGLSRLVRGCLDGKLPEP RSKAFLAVQEALAKASVETTPKDRRAPVRAFLPTFRKLCSSSFCIGALEA IVSGRADGTAGPTVGSVCSALVKTSGSGILMYAFFHGLKQMSASEVADSA GLPAGVGGGS* back to topmRNA from alignment at L-elsbetiae_contig934:13966..17447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig934.18339.1 ID=mRNA_L-elsbetiae_contig934.18339.1|Name=mRNA_L-elsbetiae_contig934.18339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3482bp|location=Sequence derived from alignment at L-elsbetiae_contig934:13966..17447- (Laminarionema elsbetiae ELsaHSoW15) CGCTGTCCGGTGAAGTGGTCTTGTGCTCGACCATCCTGGCTGGTTATGGC
ATACGAGGCACTGATCGTCATCGGGTTCGGCGTTTCCCTCGCAGTGGTAT
CGGTCGCGTTATTCGTCGCGCACGTGAAGCGTATTAATGCCCCCAACAGG
GCGGATCCCACCGGGATTGTTGTAGACATCGACCTGGGTGCCGCGCTGGC
CAAAGACGAGGCCGCCCGCAACAGGAAGGCCTCCGGCAGGAAAAGCGCAG
GCGATGATTGTGGTGGGAAGCTCAGCGGTGTTGCTGACCGTGGAGCCTTC
GCGTTGCAGCAGCAGAGTGTGGATCGGCGCAGGAGGCGACCGGGCGCAAC
AAGGGAGGGTGTCGACGAGGGCCGAGAAGACACGGCGGTAGATAGGGTCG
ACGGCGCGACAAGCACGATAGATGGCACGCAGGTGTGGCCAACGGTTGTG
AGATAAAGATGCATTGGAACGTTCTGTCTCGGTTGATGCGTGTTGGCGCT
GGGGCCGCGGCTTCTGTTTTTCCGAACGACAGGATGCTCAGCAAAGGGCG
GTCGACACGCGTGCATCAGCAGCAGCAGGCAGTGGTGCACATCGCCGGGT
CTTCAGGATGATGGCTCGCCGCTGTACACGTTAACGATTGTTGGTTCCTC
GAATGACGGTGGTTTTGGTGCCACGAGAAACTCAACTGTGGTCTGAGCAA
CATTCAAGTTCTCCGGAACGCTAATAACCTAACTAATATATTTTGCAATT
GAAGTTTGTGTCCGTTTTATGTTTCTATCAAAGTGACAAGACCTAGGGTA
CATGATAAATGCCCGTATGCTGTTGTTCGTCCTCAAATGCTATTCGTGCT
TCTCTGAACACTACATGAAACGTTGCGGCAGGAAGCACCACCTCCCACGT
ACACCGCGAGTATGGTCCTCCCGTCTCCCCTCTGGGCCGAGGCATTCGTC
AAGTACGCCGACGTCAAGCGGAAACAGCTGCGGAGCATGGTGAAGGGCGG
GGAGATCGCTGCCGGATGGGAGGCCAAGTGGGAACGGCTGTCGCTTCCGC
GAAGGCGCAAGCTCCTGGAGGCGGTGAGGGAGGAGCTGGTGCACGCGGTG
TCTTCGTACGTTGGGCGCGATGAGGGGCTGTTCGATGCCGTCTGGTGAGA
CAGGAGAAGACAGAAGCCTAAACACAGCCGCGCGTGTTTGCGAAACTTCA
CCTGTTTGGCCCTCAGTGGCGGAGCGGTGGAGAGGAATTGCTCAAAATCC
TTGGAATAGTTTATAACAGGTGTTTTCATCCCACAACCGGAGCATTTCAT
GGCACAGTAAACTTATCTTCTCTGGAAGGAATTACATAATCCACGCCGAC
CAGAAGTGTCGCTGCTTCCGCAAAAAGTGTCGAGACAGGCATGTGAGAGC
AGATACTCGACGGGGGGCAGAGATAAGGAGCGGGGGGGGGGGGGCAGGAG
GAGAGGAATGACAAGTTTTGAGGCGAAATAACACGCTTGCTGATCTTTCA
AAATACCTTTCAGGCTCTTTTAAACAATAAACAATGAATCAAAGATGGAA
CCTACCCCACACTAGAGCATGGACTCGATATGGGGTTCAAACGGTATTCC
ATACAGTGACGTAATATTTGCCGCCAGCCCTACCGACGACTAGACTGCGA
AGCGAAAGACCCACGAACGCTGCGGGTTTTGTCGGTGGCATACAACCCGG
CGTTTCAACACTTTCCGTCGGAAGTCAGAAGTGTAATTTACCACATACGT
AGTTCACTCTTTTTTCAATGCCGAATAACGCGCGCTGCTTAGAACCTACT
CTTCAGTTCGCGGTGATCATGGAGTACCTCAGCCTCCAAGGCCTGGCCGC
TTCTGACTTGCCACAACCCTTGCTGCCCCATTCACCCACTCGCAGCCCGA
ATCTCAGCGTGGGCGTACTTGAGGAGGATCACCGCGGGATCTCCGGCCTG
TCACGTCTAGTGCGGGGTTGCCTGGACGGAAAGCTGCCGGAACCGCGGTC
GAAAGCGTTCTTGGCGGTGCAGGAGGCTCTCGCAAAGGCTTCGGTGGAGA
CAACTCCGAAGGACCGGCGAGCACCGGTCCGTGCGTTCCTGCCGACCTTC
CGGAAGCTCTGCTCCTCCTCCTTCTGCATAGGGTGAGGGGGAAGAAGACG
TCTGTGCAGCATTATTCTCCCGTTTTCAAGGGCGCATCCATGTTCTTTTT
GGTATCATTTTTGACCCAATTTTTTACGCGTTATGAAAGACCCTACAACT
GCGATGTGAATAACGAACGATCGCCTGTGTATGTATTTGGTTCCGATGAA
GTGTTCGCGCCGCGCGAGATATACTGGACATTCAGCAGGATGCTCCGGCT
AATCGGTTATTCTATTTAGTGCTGTGCTCTTGCGTATCTCTGTGTCCCCC
GTGAGCGTTTGTGTCCTCCAGCAACGCGTGCGATTGGTCTAACATTTTTC
AATAGTCAGAATGAACGCACTATTAAGGCGTGTTTACGTGTTGGGTTTTG
GTTGGAATGTTTTTCTCTTGTACCGAAGCAACCGTGCAGGGCGTTACTAT
TGTACACAAGCAGTAATTCTGATGATGAAAACAATCTCCCTCCCCCCTTT
GTTTGGGCGTGCAGGGCCCTGGAGGCTATCGTAAGCGGGAGGGCCGACGG
TACTGCAGGGCCCACAGTGGGGTCTGTCTGCTCGGCTCTCGTCAAGACGA
GTGGATCGGGCATCCTTATGTACGCGTTTTTCCACGGGTTGAAGCAGATG
TCGGCCTCGGAGGTGGCCGACTCGGCAGGGCTTCCAGCGGGCGTGGGTGG
AGGCAGCTAGAAATAGAGTCTTGTAGAGGAGTGAGAAGGACTGCGGGTCC
TGAGGGGGGAGTGTTGATTAGGTGTTGATCGTGCATGCCGTAGCCGTGTT
AGACTGCTCTATGGGAGGCGTTCAGGCGAACGGTTTTTACTCTCTGGAGG
ATGTGTTGATAAATTATGCATGTAACGGTTTTATGTTTCGTCTCGTTTTC
AAACATGATCATATGCAGGTGTGCAGAGAAGTAGCTCAGAGGCAAACTTG
GCGAGTTTGTCGGTTGCCATCCGCGTCTTGAACCGCAACGTTAAGCATCA
TTAATTTGTCGTTTAGTGCTTCCCCCCCCCGGTTCTCAGACCAACATTAG
TGTCGGTGCTGATCGCCGGTTCGGTTTCGTGTCGTCGCGAAAACACTTTA
TCTCGAGATGGCACACAGCCTAGGCTTCTTTTCTCAGAGGGTTGAGAGCT
GTTGTGGCCAAGCTTGATAAAAAACAAGCTCGCTTCAGTGCCGTATGTGG
CAAACCAAGTAATATAGGAACGCTTTAGCGACCATGACGTCCAAAGCGTT
CCTACAGAATACATCGTCTGCATTTGTCTGGCTTTGAAGCGAGCCTGTTA
TTGTATGTATGTCGAAGGCTTTCAAAATGATGTTTACCGTGTCGTAATCT
CTGAACTGAGATGAAAAATGAAATAAACGCTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig934:13966..17447- >mRNA_L-elsbetiae_contig934.18339.1 ID=mRNA_L-elsbetiae_contig934.18339.1|Name=mRNA_L-elsbetiae_contig934.18339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig934:13966..17447- (Laminarionema elsbetiae ELsaHSoW15) ATGGCATACGAGGCACTGATCGTCATCGGGTTCGGCGTTTCCCTCGCAGT GGTATCGGTCGCGTTATTCGTCGCGCACGTGAAGCGTATTAATGCCCCCA ACAGGGCGGATCCCACCGGGATTGTTGTAGACATCGACCTGGGTGCCGCG CTGGCCAAAGACGAGGCCGCCCGCAACAGGAAGGCCTCCGGCAGGAAAAG CGCAGGCGATGATTGTGGTGGGAAGCTCAGCGGTGTTGCTGACCGTGGAG CCTTCGCGTTGCAGCAGCAGAGTGTGGATCGGCGCAGGAGGCGACCGGGC GCAACAAGGGAGGGTGTCGACGAGGGCCGAGAAGACACGGCGGTAGATAG GGTCGACGGCGCGACAAGCACGATAGATGGCACGCAGATGGCATACGAGG CACTGATCGTCATCGGGTTCGGCGTTTCCCTCGCAGTGGTATCGGTCGCG TTATTCGTCGCGCACGTGAAGCGTATTAATGCCCCCAACAGGGCGGATCC CACCGGGATTGTTGTAGACATCGACCTGGGTGCCGCGCTGGCCAAAGACG AGGCCGCCCGCAACAGGAAGGCCTCCGGCAGGAAAAGCGCAGGCGATGAT TGTGGTGGGAAGCTCAGCGGTGTTGCTGACCGTGGAGCCTTCGCGTTGCA GCAGCAGAGTGTGGATCGGCGCAGGAGGCGACCGGGCGCAACAAGGGAGG GTGTCGACGAGGGCCGAGAAGACACGGCGGTAGATAGGGTCGACGGCGCG ACAAGCACGATAGATGGCACGCAGGAAGCACCACCTCCCACGTACACCGC GAGTATGGTCCTCCCGTCTCCCCTCTGGGCCGAGGCATTCGTCAAGTACG CCGACGTCAAGCGGAAACAGCTGCGGAGCATGGTGAAGGGCGGGGAGATC GCTGCCGGATGGGAGGCCAAGTGGGAACGGCTGTCGCTTCCGCGAAGGCG CAAGCTCCTGGAGGCGGTGAGGGAGGAGCTGGTGCACGCGGTGTCTTCGT ACGTTGGGCGCGATGAGGGGCTGTTCGATGCCGTCTGGAAGCACCACCTC CCACGTACACCGCGAGTATGGTCCTCCCGTCTCCCCTCTGGGCCGAGGCA TTCGTCAAGTACGCCGACGTCAAGCGGAAACAGCTGCGGAGCATGGTGAA GGGCGGGGAGATCGCTGCCGGATGGGAGGCCAAGTGGGAACGGCTGTCGC TTCCGCGAAGGCGCAAGCTCCTGGAGGCGGTGAGGGAGGAGCTGGTGCAC GCGGTGTCTTCGTACGTTGGGCGCGATGAGGGGCTGTTCGATGCCGTCTG CCCGAATCTCAGCGTGGGCGTACTTGAGGAGGATCACCGCGGGATCTCCG GCCTGTCACGTCTAGTGCGGGGTTGCCTGGACGGAAAGCTGCCGGAACCG CGGTCGAAAGCGTTCTTGGCGGTGCAGGAGGCTCTCGCAAAGGCTTCGGT GGAGACAACTCCGAAGGACCGGCGAGCACCGGTCCGTGCGTTCCTGCCGA CCTTCCGGAAGCTCTGCTCCTCCTCCTTCTGCATAGGCCCGAATCTCAGC GTGGGCGTACTTGAGGAGGATCACCGCGGGATCTCCGGCCTGTCACGTCT AGTGCGGGGTTGCCTGGACGGAAAGCTGCCGGAACCGCGGTCGAAAGCGT TCTTGGCGGTGCAGGAGGCTCTCGCAAAGGCTTCGGTGGAGACAACTCCG AAGGACCGGCGAGCACCGGTCCGTGCGTTCCTGCCGACCTTCCGGAAGCT CTGCTCCTCCTCCTTCTGCATAGGGGCCCTGGAGGCTATCGTAAGCGGGA GGGCCGACGGTACTGCAGGGCCCACAGTGGGGTCTGTCTGCTCGGCTCTC GTCAAGACGAGTGGATCGGGCATCCTTATGTACGCGTTTTTCCACGGGTT GAAGCAGATGTCGGCCTCGGAGGTGGCCGACTCGGCAGGGCTTCCAGCGG GCGTGGGTGGAGGCAGCTAGGGCCCTGGAGGCTATCGTAAGCGGGAGGGC CGACGGTACTGCAGGGCCCACAGTGGGGTCTGTCTGCTCGGCTCTCGTCA AGACGAGTGGATCGGGCATCCTTATGTACGCGTTTTTCCACGGGTTGAAG CAGATGTCGGCCTCGGAGGTGGCCGACTCGGCAGGGCTTCCAGCGGGCGT GGGTGGAGGCAGCTAG back to top
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