mRNA_L-elsbetiae_contig9327.18328.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9327.18328.1
Unique NamemRNA_L-elsbetiae_contig9327.18328.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9327.18328.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.460e-18
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  136 RWPEEETWKDVEKWRAHEKFNK-----NRCDDGCVRTSNDGTKGRVCDTSCDGGDPYGTLGCGALDDEYGRYCRFCFNDVHLAKAADTDRHRAIM 405
            RW E+   ++  +W+   K+ +     + C   C  TSNDGT+GRVCD++C+ G PYG LGC A   +YG +CR CFNDV  A   DT ++RAIM
Sbjct:  372 RWGEDRELEEGPEWQTERKWKRFDYGSDSCMAKCEHTSNDGTRGRVCDSTCENGHPYGDLGCSAKGGKYGPHCRTCFNDVDTALMRDTPKNRAIM 466
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BLAST of mRNA_L-elsbetiae_contig9327.18328.1 vs. uniprot
Match: A0A6H5JGJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-17
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  136 RWPEEETWKDVEKWRAHEKFNKNR----CDDGCVRTSNDGTKGRVCDTSCDGGDPYGTLGCGALDDEYGRYCRFCFNDVHLAKAADTDRHRAIM 405
            RW +    ++  KW+   K+ +      C D C  TSNDG +GRVCD++C+ G PYG LGC A    +G +CR CFNDV +A   DT ++RAIM
Sbjct:  175 RWGDYHEVEEAPKWQTERKWKRFDYGFDCMDKCEHTSNDGIRGRVCDSTCEDGHPYGNLGCSAKGGRFGPHCRTCFNDVDMALMRDTPKNRAIM 268
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BLAST of mRNA_L-elsbetiae_contig9327.18328.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.180e-15
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  205 RCDDGCVRTSNDGTKGRVCDTSCDGGDPYGTLGCGALDDEYGRYCRFCFNDVHLAKAADTDRHRAIM 405
            +C DGC  TSNDGT+GRVCD +C   D +GTLGCG  D  YG  CR C+ND   A   DT  +RAIM
Sbjct:  306 KCTDGCKYTSNDGTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQDTPGNRAIM 372
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BLAST of mRNA_L-elsbetiae_contig9327.18328.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.900e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  208 CDDGCVRTSNDGTKGRVCDTSCDGGDPYGTLGCGALDDEYGRYCRFCFNDVHLAKAADTDRHRAIM 405
            C D C  TSNDGT GR+CD +C+ GDP+G L C     +YG  CR+CFNDV  A   DT  +RAIM
Sbjct:  125 CTDSCEYTSNDGTTGRMCDPTCEDGDPHGMLFCDTKSGQYGSNCRYCFNDVDRAMKFDTPDNRAIM 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9327.18328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR80_ECTSI2.460e-1845.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGJ2_9PHAE1.130e-1744.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L131_9PHAE2.180e-1556.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTU7_ECTSI6.900e-1554.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9327contigL-elsbetiae_contig9327:5638..7564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue5e-16
Seed eggNOG ortholog2880.D7FI37
Hectar predicted targeting categoryother localisation
EggNOG OGs2D0G2@1,2SE3H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size408
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9327.18328.1prot_L-elsbetiae_contig9327.18328.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9327 5638..7564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.65471-CDS-L-elsbetiae_contig9327:5637..57361622817002.65471-CDS-L-elsbetiae_contig9327:5637..5736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 5638..5736 +
1691683974.9018238-CDS-L-elsbetiae_contig9327:5637..57361691683974.9018238-CDS-L-elsbetiae_contig9327:5637..5736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 5638..5736 +
1622817002.6691563-CDS-L-elsbetiae_contig9327:6178..62851622817002.6691563-CDS-L-elsbetiae_contig9327:6178..6285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 6179..6285 +
1691683974.9123387-CDS-L-elsbetiae_contig9327:6178..62851691683974.9123387-CDS-L-elsbetiae_contig9327:6178..6285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 6179..6285 +
1622817002.6805043-CDS-L-elsbetiae_contig9327:7362..75641622817002.6805043-CDS-L-elsbetiae_contig9327:7362..7564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 7363..7564 +
1691683974.923552-CDS-L-elsbetiae_contig9327:7362..75641691683974.923552-CDS-L-elsbetiae_contig9327:7362..7564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9327 7363..7564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9327.18328.1

>prot_L-elsbetiae_contig9327.18328.1 ID=prot_L-elsbetiae_contig9327.18328.1|Name=mRNA_L-elsbetiae_contig9327.18328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MHRHEPPVAGATVADAVAPVTARSRKLSEEEEEAAATRGLAGDVLRWPEE
ETWKDVEKWRAHEKFNKNRCDDGCVRTSNDGTKGRVCDTSCDGGDPYGTL
GCGALDDEYGRYCRFCFNDVHLAKAADTDRHRAIM*
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mRNA from alignment at L-elsbetiae_contig9327:5638..7564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9327.18328.1 ID=mRNA_L-elsbetiae_contig9327.18328.1|Name=mRNA_L-elsbetiae_contig9327.18328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1927bp|location=Sequence derived from alignment at L-elsbetiae_contig9327:5638..7564+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACAGGCACGAGCCCCCCGTGGCCGGCGCTACCGTCGCCGACGCGGT
TGCGCCCGTGACTGCCAGGTCTCGTAAACTTAGCGAGGAGGAGGAAGAGG
TGTGTTGTGTTCCATGTTGGATGACGGCGGTAAAAAGGTGTTCGTTGGTT
GCATATTACCTTGATATTGAATCCACATCAAGTTTGGAGATGTATCTGCC
ATGGAGGAGGAAGAGGTGTGGTGTGTTCGTGCTGGATGACGGCGGTAAAA
ATATGTTGGTTGTAATGCTTTGACATTGAAGCCACGTCAGGTTTGGAGCT
GTATGTAACCGCCATTTTGTCGTCCGCAAGCTTTTTCCTGCTTGTGTCTC
CCAGACTTGCAATGACACGACACGGGTTCGAATGTCTCAAAGTAAGTAGC
ATGATAACAGAACAGTAGTGGTACGTATACTACCTCATCTGCAAGGTCGT
GTTTCCCGAACCTTCGTTCACACGGTATTGATGAACATAACTCCAATACC
CATTTTTTTTGTGTCGTCGACATCGCTTGCGGCACATCCAGGCCGCCGCC
ACCCGTGGCCTCGCCGGGGACGTACTGAGGTGGCCGGAAGAAGAGACGTG
GAAGGACGTCGAGAAGTGGCGGGCCCACGAGAAGTTCAATAAGAACAGGT
ACGTACAAAGATACATATCTATCTCCTGCTTGCCTGCCGCGCCAGCGTTC
GTCGGACACATTCCGCTCTGTCCCCCCCCCCCTCCCCAGTGTAGTGCCCC
CTCCACAGCAACAGTAGGCGGGTGTGGGAAGCATCAGCTCTCGACAGCTC
TCTTCTCCTTCCTCCACTTGGCGTGGCATCTGTTTTTTTTTACTTTTTAA
GTTTTCTTATTTTCCGAGGGGGTGTGCATGTACCCGCCCTTCTGCTTTCT
TTTTAGAAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGATA
GAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAA
CATTTGGCGAAGCGAGCAGAAAAACAGCCTTAAATATCAGAAGAGTTCAA
CATCTCCCCTGCAAAGATTTAAGATTTGTGAGGTCGGCCAACAATTATTT
TGTAGTGCGACGCCAGAACCCCCTCGGGAGTCGGTTTCTTTGTAAAATAT
CGCCCGGCGCGTGTGTGTTTATAATTTTGTTTCACTTTTCTTGAGCGGCG
TCGAGTGTGTGCCTGCTTTTGTCAAGGGGGCTTGCGGGTTGCATTACCTC
ACACTTACGCCAACAAACTGACTCGAGCTAAAATTGGAGGAAAGTATGCT
ATTTCCTATATACGCAGTATTTGTTTTTTGGGGGGAACGGCAGCCTAGAT
TCTTCAGTGGGGGCGCGGTTATGCGGGTATCCCCCAACGGATCCCCCTTT
ACTATTTCCTATATGTTTTTTCAATCTGGACTAGGCCAAAAAAACGTGGG
ACCGGAGGGGGGGGGGAGAGTGCAGTGGTATTAATGTGAGGTATTGCAAC
CCGCAAGCTCCTTTGTTTTTTGTGGCCACGCCCCCCCGTGGATGCTTTCG
GACTATCTCGAGAGCTAGACAATGTGATAAACAACAGCATTTGTCGACAC
TCCATGCCCAACCTCAAAAGCCCTGCCCGTCCGAACGGCGCGGCTCCGTT
CCCACGTAAATACATACTTTGTACATATGTTCATACTTAAAATACATCCA
AACATGTCAACGTGTACATCAACAGGTGTGACGACGGCTGCGTCCGCACG
AGCAACGACGGGACCAAGGGCCGCGTGTGCGACACGAGCTGCGACGGCGG
TGACCCCTACGGAACCCTGGGTTGCGGCGCGCTGGACGACGAGTACGGCC
GCTACTGCCGCTTCTGCTTTAACGACGTGCACTTGGCCAAGGCCGCCGAC
ACCGATCGGCACCGTGCCATCATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9327:5638..7564+

>mRNA_L-elsbetiae_contig9327.18328.1 ID=mRNA_L-elsbetiae_contig9327.18328.1|Name=mRNA_L-elsbetiae_contig9327.18328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig9327:5638..7564+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACAGGCACGAGCCCCCCGTGGCCGGCGCTACCGTCGCCGACGCGGT
TGCGCCCGTGACTGCCAGGTCTCGTAAACTTAGCGAGGAGGAGGAAGAGA
TGCACAGGCACGAGCCCCCCGTGGCCGGCGCTACCGTCGCCGACGCGGTT
GCGCCCGTGACTGCCAGGTCTCGTAAACTTAGCGAGGAGGAGGAAGAGGC
CGCCGCCACCCGTGGCCTCGCCGGGGACGTACTGAGGTGGCCGGAAGAAG
AGACGTGGAAGGACGTCGAGAAGTGGCGGGCCCACGAGAAGTTCAATAAG
AACAGGCCGCCGCCACCCGTGGCCTCGCCGGGGACGTACTGAGGTGGCCG
GAAGAAGAGACGTGGAAGGACGTCGAGAAGTGGCGGGCCCACGAGAAGTT
CAATAAGAACAGGTGTGACGACGGCTGCGTCCGCACGAGCAACGACGGGA
CCAAGGGCCGCGTGTGCGACACGAGCTGCGACGGCGGTGACCCCTACGGA
ACCCTGGGTTGCGGCGCGCTGGACGACGAGTACGGCCGCTACTGCCGCTT
CTGCTTTAACGACGTGCACTTGGCCAAGGCCGCCGACACCGATCGGCACC
GTGCCATCATGTGAGTGTGACGACGGCTGCGTCCGCACGAGCAACGACGG
GACCAAGGGCCGCGTGTGCGACACGAGCTGCGACGGCGGTGACCCCTACG
GAACCCTGGGTTGCGGCGCGCTGGACGACGAGTACGGCCGCTACTGCCGC
TTCTGCTTTAACGACGTGCACTTGGCCAAGGCCGCCGACACCGATCGGCA
CCGTGCCATCATGTGA
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