mRNA_L-elsbetiae_contig9325.18325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9325.18325.1
Unique NamemRNA_L-elsbetiae_contig9325.18325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Match: D8LS95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS95_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 3.390e-82
Identity = 128/154 (83.12%), Postives = 135/154 (87.66%), Query Frame = 1
Query:    1 YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSGKGLLGALGCAAVLTLANTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGLVEVSVPSPQKTLRCEGFPLAFDDNAVLPVLGALGAAAVFHVLGLGSCELRPWLF 462
            YCLAGLGITSA+FPKHIALLGMLQLALGDPVAAL GHATRSVGWSRV +GKGLLGALGCA  LTLAN+ VLA+A F+ GAP  L R+VLA G IAAW   VEVSVPSPQKTL CEGFPLAFDDNA LPVLGA+GAA VF VLGLGSCELRPWLF
Sbjct:  150 YCLAGLGITSAMFPKHIALLGMLQLALGDPVAALCGHATRSVGWSRVGTGKGLLGALGCATALTLANSFVLAKARFESGAPT-LRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWLF 302          
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Match: A0A6U5JUM7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5JUM7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.630e-15
Identity = 59/170 (34.71%), Postives = 82/170 (48.24%), Query Frame = 1
Query:    1 YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSG-------KGLLGALGCAAVLTLANTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGLVEVSVPSPQKTLRCEGF-----PLAFDDNAVLPVLGALGAAAVFHVLGLGSCE----LRPWLF 462
            Y   G+ +TSA+F K  A LG+ QLA+ DP A+ FG +TR V WSR+ SG       KG LG LG A      N  VL  A F    P     ++ A+ A+       +++VP+P   +  + F     P   DDN V+P+     A  +F  L   SC     L P++F
Sbjct:  241 YFFVGVTVTSALFSKAAATLGIFQLAIADPSASYFGRSTRHVYWSRIESGLGGFGRNKGFLGFLGGALACVPLNYQVLRMAQFGKIVPGGQQALLTASLALGMAGAFADLAVPTPALVMPEKVFGVRVPPFHVDDNFVVPIFAGFAATHIFKAL---SCPTDFTLAPFVF 407          
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Match: A0A7S4AI34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AI34_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.860e-15
Identity = 65/172 (37.79%), Postives = 86/172 (50.00%), Query Frame = 1
Query:    1 YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSG-------KGLLGALGCAA--------VLTLA---NTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGLVEVSVPSPQKTL--RCEGF---PLAFDDNAVLPVLGALGAAAVFHVLGLGSCEL 447
            Y  +G+ +TS +FPK  A LG++QLA+ DP A+ FG ATR V WSR+ +G       KG+LG LG A         +L+LA   NT   A  T    A P +  + LA G   A   L ++ VP+P  TL  R  G    P   DDN V+PVL       +     +G  EL
Sbjct:  300 YYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTI---AKPTVLAISLALGMAGA---LADLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLSGWACVYILAAASIGRNEL 465          
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Match: A0A7S4EJ41_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EJ41_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.540e-15
Identity = 65/172 (37.79%), Postives = 86/172 (50.00%), Query Frame = 1
Query:    1 YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSG-------KGLLGALGCAA--------VLTLA---NTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGLVEVSVPSPQKTL--RCEGF---PLAFDDNAVLPVLGALGAAAVFHVLGLGSCEL 447
            Y  +G+ +TS +FPK  A LG++QLA+ DP A+ FG ATR V WSR+ +G       KG+LG LG A         +L+LA   NT   A  T    A P +  + LA G   A   L ++ VP+P  TL  R  G    P   DDN V+PVL       +     +G  EL
Sbjct:  420 YYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTI---AKPTVLAISLALGMAGA---LADLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLSGWACVYILAAASIGRNEL 585          
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Match: UPI001989E47C (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=UPI001989E47C)

HSP 1 Score: 53.1 bits (126), Expect = 1.670e-5
Identity = 39/144 (27.08%), Postives = 64/144 (44.44%), Query Frame = 1
Query:    1 YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSGKGLLGALGCAAVLTLANTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGLVEVSVPSPQKTLRCEGFPLAFDDNAVLPVLGALGAAAVFHVLGL 432
            + +A + ++ A+FPK IA+L +L LA+GDPV+++FG         R  +GK L+G    AA + + + +        G    P   + LA G       ++                PL  DDN  +P++  L     F V G+
Sbjct:   96 FYIASVLLSVAIFPKPIAILSILFLAIGDPVSSIFGITYGDRIGMRFANGKSLIGT---AAGMGICSVITFVYLMLTGVPLVPSSSIALAGGLAGGGAEMI----------------PLDIDDNFSIPLVSGLALWIAFLVFGV 220          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9325.18325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LS95_ECTSI3.390e-8283.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U5JUM7_9STRA1.630e-1534.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4AI34_9STRA6.860e-1537.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4EJ41_9STRA7.540e-1537.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
UPI001989E47C1.670e-527.08Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9325contigL-elsbetiae_contig9325:3282..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue3e-65
Seed eggNOG ortholog2880.D8LS95
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E1KA@1,2S8X1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004350.1
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.4961038-CDS-L-elsbetiae_contig9325:3281..37491622817002.4961038-CDS-L-elsbetiae_contig9325:3281..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9325 3282..3749 +
1691683974.8093388-CDS-L-elsbetiae_contig9325:3281..37491691683974.8093388-CDS-L-elsbetiae_contig9325:3281..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9325 3282..3749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9325.18325.1prot_L-elsbetiae_contig9325.18325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9325 3282..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9325.18325.1

>prot_L-elsbetiae_contig9325.18325.1 ID=prot_L-elsbetiae_contig9325.18325.1|Name=mRNA_L-elsbetiae_contig9325.18325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
YCLAGLGITSAVFPKHIALLGMLQLALGDPVAALFGHATRSVGWSRVRSG
KGLLGALGCAAVLTLANTVVLARATFDGGAPPPLGRVVLAAGAIAAWTGL
VEVSVPSPQKTLRCEGFPLAFDDNAVLPVLGALGAAAVFHVLGLGSCELR
PWLFA*
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mRNA from alignment at L-elsbetiae_contig9325:3282..3749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9325.18325.1 ID=mRNA_L-elsbetiae_contig9325.18325.1|Name=mRNA_L-elsbetiae_contig9325.18325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig9325:3282..3749+ (Laminarionema elsbetiae ELsaHSoW15)
TACTGCCTCGCTGGCCTGGGGATAACCTCCGCCGTGTTCCCTAAGCACAT CGCCCTGTTGGGGATGCTCCAGCTGGCGCTCGGCGACCCCGTGGCGGCGC TGTTCGGGCACGCGACTCGGTCCGTCGGGTGGTCCCGCGTGAGGTCTGGC AAGGGCCTCCTGGGGGCGCTCGGCTGCGCGGCGGTGCTGACCCTCGCCAA CACGGTCGTCCTGGCCAGGGCGACGTTTGACGGGGGGGCGCCGCCGCCGC TCGGCCGAGTCGTGCTCGCTGCGGGGGCGATCGCCGCGTGGACGGGCCTG GTGGAGGTCAGCGTGCCCAGCCCCCAGAAGACGCTCCGGTGCGAGGGGTT CCCGCTGGCGTTCGACGACAACGCGGTGCTGCCGGTGCTCGGAGCGCTGG GCGCGGCGGCGGTGTTCCATGTACTGGGGTTGGGCAGCTGCGAGCTGCGA CCATGGCTGTTCGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9325:3282..3749+

>mRNA_L-elsbetiae_contig9325.18325.1 ID=mRNA_L-elsbetiae_contig9325.18325.1|Name=mRNA_L-elsbetiae_contig9325.18325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig9325:3282..3749+ (Laminarionema elsbetiae ELsaHSoW15)
TACTGCCTCGCTGGCCTGGGGATAACCTCCGCCGTGTTCCCTAAGCACAT
CGCCCTGTTGGGGATGCTCCAGCTGGCGCTCGGCGACCCCGTGGCGGCGC
TGTTCGGGCACGCGACTCGGTCCGTCGGGTGGTCCCGCGTGAGGTCTGGC
AAGGGCCTCCTGGGGGCGCTCGGCTGCGCGGCGGTGCTGACCCTCGCCAA
CACGGTCGTCCTGGCCAGGGCGACGTTTGACGGGGGGGCGCCGCCGCCGC
TCGGCCGAGTCGTGCTCGCTGCGGGGGCGATCGCCGCGTGGACGGGCCTG
GTGGAGGTCAGCGTGCCCAGCCCCCAGAAGACGCTCCGGTGCGAGGGGTT
CCCGCTGGCGTTCGACGACAACGCGGTGCTGCCGGTGCTCGGAGCGCTGG
GCGCGGCGGCGGTGTTCCATGTACTGGGGTTGGGCAGCTGCGAGCTGCGA
CCATGGCTGTTCGCTTGATACTGCCTCGCTGGCCTGGGGATAACCTCCGC
CGTGTTCCCTAAGCACATCGCCCTGTTGGGGATGCTCCAGCTGGCGCTCG
GCGACCCCGTGGCGGCGCTGTTCGGGCACGCGACTCGGTCCGTCGGGTGG
TCCCGCGTGAGGTCTGGCAAGGGCCTCCTGGGGGCGCTCGGCTGCGCGGC
GGTGCTGACCCTCGCCAACACGGTCGTCCTGGCCAGGGCGACGTTTGACG
GGGGGGCGCCGCCGCCGCTCGGCCGAGTCGTGCTCGCTGCGGGGGCGATC
GCCGCGTGGACGGGCCTGGTGGAGGTCAGCGTGCCCAGCCCCCAGAAGAC
GCTCCGGTGCGAGGGGTTCCCGCTGGCGTTCGACGACAACGCGGTGCTGC
CGGTGCTCGGAGCGCTGGGCGCGGCGGCGGTGTTCCATGTACTGGGGTTG
GGCAGCTGCGAGCTGCGACCATGGCTGTTCGCTTGA
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