mRNA_L-elsbetiae_contig9316.18320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9316.18320.1 vs. uniprot
Match: D8LAT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAT0_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.710e-47 Identity = 148/388 (38.14%), Postives = 189/388 (48.71%), Query Frame = 3 Query: 183 MRQEPELAHP-FSRRPSKESVTSTTSKTSSADKAHAKSLRNAGKEAFLTVVREVVEEIAIETADQALQDE-VRMDGLHKRDRPSGDGSSRPHRRPSSHRDPSATAPAIRPGVGPSQDSASGSPFRGGHSNRGGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAM-----SASYRNTSVSMEDDERETLLSLLSGAYGQVNDLTDELKAALDKLSDTEKELKSLSRSQSNPQLLPKQPSQSELQSPKDVDMEDADATAATAQDRKPVSKMLSGMFPSDEGAKSTPAAVRQLQVEVQRLRQRNTQAREKEDKYKADISHLQR 1325 M EPELAHP FSRR S S S++ +KAHAKSLRNAGKEAFLTVVRE V+E+ ++ A++A+++E +RM+ + SQDSA GSPFR S+R G X + S+RNT+ +MEDDERETLL+LL+GAYGQVNDLTDELK +LDKL+DTEKELK+++ + + Q +P PS + L A A T + R PVSK+L +FP+DEG +STPAAVRQLQVEVQRLRQRN QA KE+KYK++I+HL+R Sbjct: 1 MPPEPELAHPSFSRRASNTSAASSSXXXXXXEKAHAKSLRNAGKEAFLTVVRETVQELGLDAANEAIEEEAIRMEEMQT-----------------------------------SQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGVDTAEPSERRRRRHRKSSMAQGEGQSIVAAAMANFGGGVDANPGAIPEEGRVLSRSFQGSDSADPGDDSAAAEAAVGRPAXXXXXXGGEATSFRNTAETMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPN-PSPTSLNG-----QSGAHAEGVTPK-RSPVSKLLKDVFPNDEGGRSTPAAVRQLQVEVQRLRQRNAQAHSKEEKYKSEIAHLKR 346 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9316.18320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9316.18320.1 >prot_L-elsbetiae_contig9316.18320.1 ID=prot_L-elsbetiae_contig9316.18320.1|Name=mRNA_L-elsbetiae_contig9316.18320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp MRQEPELAHPFSRRPSKESVTSTTSKTSSADKAHAKSLRNAGKEAFLTVVback to top mRNA from alignment at L-elsbetiae_contig9316:1808..7575+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9316.18320.1 ID=mRNA_L-elsbetiae_contig9316.18320.1|Name=mRNA_L-elsbetiae_contig9316.18320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5768bp|location=Sequence derived from alignment at L-elsbetiae_contig9316:1808..7575+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9316:1808..7575+ >mRNA_L-elsbetiae_contig9316.18320.1 ID=mRNA_L-elsbetiae_contig9316.18320.1|Name=mRNA_L-elsbetiae_contig9316.18320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig9316:1808..7575+ (Laminarionema elsbetiae ELsaHSoW15)back to top |