mRNA_L-elsbetiae_contig9314.18315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9314.18315.1
Unique NamemRNA_L-elsbetiae_contig9314.18315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9314.18315.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 44/82 (53.66%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 LHDKLYAFKRAQLPLLPGHLSSAYRAQ----------------------------GETIETLLLHMKKPVDGLMDERAPYVA 162
            LHDK Y+FKR QLPLLPGHLSS YRAQ                            GETI+TLLLHM KPVDG+MD  A YVA
Sbjct: 1104 LHDKKYSFKRGQLPLLPGHLSSVYRAQHFIHAYMHTSVLPQLVSFCLSSCYLSSKGETIKTLLLHMTKPVDGVMDPSAAYVA 1185
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BLAST of mRNA_L-elsbetiae_contig9314.18315.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.110e-5
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 LHDKLYAFKRAQLPLLPGHLSSAYRAQGETIETLLLHMKKPVDGLMDERAPYVA 162
            ++ + + FKR Q+PL  G LSS YR+QG+T+  ++L +++P    +D  A YVA
Sbjct:  224 INKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVA 277
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BLAST of mRNA_L-elsbetiae_contig9314.18315.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.150e-5
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 LHDKLYAFKRAQLPLLPGHLSSAYRAQGETIETLLLHMKKPVDGLMDERAPYVA 162
            ++ + + FKR Q+PL  G LSS YR+QG+T+  ++L +++P    +D  A YVA
Sbjct: 1931 INKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVA 1984
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9314.18315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JT57_9PHAE1.100e-1553.66ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G2I1_ECTSI3.110e-540.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI3.150e-540.74ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9314contigL-elsbetiae_contig9314:1676..1989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.5838134-CDS-L-elsbetiae_contig9314:1676..17571622817001.5838134-CDS-L-elsbetiae_contig9314:1676..1757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 1677..1757 -
1691683974.1140878-CDS-L-elsbetiae_contig9314:1676..17571691683974.1140878-CDS-L-elsbetiae_contig9314:1676..1757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 1677..1757 -
1622817001.5941992-CDS-L-elsbetiae_contig9314:1908..19891622817001.5941992-CDS-L-elsbetiae_contig9314:1908..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 1909..1989 -
1691683974.125667-CDS-L-elsbetiae_contig9314:1908..19891691683974.125667-CDS-L-elsbetiae_contig9314:1908..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 1909..1989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9314.18315.1prot_L-elsbetiae_contig9314.18315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9314 1677..1989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9314.18315.1

>prot_L-elsbetiae_contig9314.18315.1 ID=prot_L-elsbetiae_contig9314.18315.1|Name=mRNA_L-elsbetiae_contig9314.18315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
LHDKLYAFKRAQLPLLPGHLSSAYRAQGETIETLLLHMKKPVDGLMDERA
PYVA
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mRNA from alignment at L-elsbetiae_contig9314:1676..1989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9314.18315.1 ID=mRNA_L-elsbetiae_contig9314.18315.1|Name=mRNA_L-elsbetiae_contig9314.18315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:1676..1989- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGACAAACTCTACGCTTTCAAACGTGCGCAGTTGCCCCTCCTCCC
GGGCCACCTCTCTTCCGCCTATCGGGCTCAGGTAATTTTCTACAGAACTA
CACATCACGCTTTTGCTTCCAAATCTACTGCCCCCTTTTCGTCTTTCGTC
GTAGATGCCATCTCGTTCCGTTTCCACGCGCCTTGCTTACTTGATGTGCC
GTGTGCTCGCTCTTCTGCTATGTTTCACCAAGGGCGAAACAATTGAGACG
TTGCTGCTGCACATGAAGAAGCCCGTCGATGGACTTATGGACGAGCGGGC
CCCTTACGTCGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9314:1676..1989-

>mRNA_L-elsbetiae_contig9314.18315.1 ID=mRNA_L-elsbetiae_contig9314.18315.1|Name=mRNA_L-elsbetiae_contig9314.18315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:1676..1989- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGACAAACTCTACGCTTTCAAACGTGCGCAGTTGCCCCTCCTCCC
GGGCCACCTCTCTTCCGCCTATCGGGCTCAGCTGCACGACAAACTCTACG
CTTTCAAACGTGCGCAGTTGCCCCTCCTCCCGGGCCACCTCTCTTCCGCC
TATCGGGCTCAGGGCGAAACAATTGAGACGTTGCTGCTGCACATGAAGAA
GCCCGTCGATGGACTTATGGACGAGCGGGCCCCTTACGTCGCCGGCGAAA
CAATTGAGACGTTGCTGCTGCACATGAAGAAGCCCGTCGATGGACTTATG
GACGAGCGGGCCCCTTACGTCGCC
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