mRNA_L-elsbetiae_contig9313.18313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9313.18313.1
Unique NamemRNA_L-elsbetiae_contig9313.18313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A6H5JLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN2_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 5.390e-76
Identity = 193/324 (59.57%), Postives = 206/324 (63.58%), Query Frame = 1 
Query:    1 APVPPAGPDTPAPPLAAXXXXXXXXXXXXXXXXXXXSCRSAAVPSVLADDELWGPPPGARRPYQXXXXXXXXXXXXXXXXXXXXX----VSPPWAGGAGTDELGGDAGATGGPXXVAARGTGPGRMESAAEAXXXXXXXXXXXVAGVLP-GPAAG--------RPTSTPRRKRTSTSGINRERQFDGTVTGGSGS-----SRFGXXXXXXXXXXXXXXXSGPGNGRGGLSKKTLNIVTNLKSHSTDVRSREEMEDLEEEKRLXXXXXXFKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVRS 918
            AP P A P+TPAP L A                   S  S  V SVLADDELWGPP GARRP+Q   XXXXXXXXXXXXXX        +SPPW G    D  GG +G             G GR++  A A           V G L  GPAA         R T+TPRRKRTSTSGINRERQFDGTVTGG+       SRFG               SGPGNGRGGLSKKTLNIVTNLKSH+TDVRSREEMEDLEEE   XXXXXX KENLRQKGDDFD TIRILLLGDSGVGKTSLMTRFSEDKFAPT+ISTAGVD+KV++
Sbjct:   37 APAPTAAPNTPAP-LLAGTSTNANSCLNGNGGSSNSSNSSGVVHSVLADDELWGPPAGARRPFQARGXXXXXXXXXXXXXXGAVASRRAISPPWTGNI--DYGGGCSG-------------GAGRVDGGASAAEGDGFREAARVGGGLGLGPAAVAAVTANGVRNTATPRRKRTSTSGINRERQFDGTVTGGTXXXXXXXSRFGRGRRR----------SGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEEEXXXXXXXXXXKENLRQKGDDFDRTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQT 334
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: D7FX24_ECTSI (Rab8C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX24_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.240e-61
Identity = 123/156 (78.85%), Postives = 131/156 (83.97%), Query Frame = 1 
Query:  457 TSTPRRKRTSTSGINRERQFDGTVTGGSGSS--RFGXXXXXXXXXXXXXXXSGPGNGRGGLSKKTLNIVTNLKSHSTDVRSREEMEDLEEEKRLXXXXXXFKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVRS 918
            T+TPRRKRTSTSGINRERQFDGTVTGG+G +  RFG               SGPGNGRGGLSKKTLNIVTNLKSH+TDVRSREEMEDLE     XXXXXX  ENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPT+ISTAGVD+KV++
Sbjct:   33 TATPRRKRTSTSGINRERQFDGTVTGGTGGTGGRFGGGRRR----------SGPGNGRGGLSKKTLNIVTNLKSHTTDVRSREEMEDLEXXXXXXXXXXXXXENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQT 178
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.330e-10
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  793 TIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            TIRILLLGDSGVGKTSLM R++ED F+P ++STAGVDFKVR
Sbjct:    2 TIRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVR 42
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A2R5GVA5_9STRA (Ras-related protein Rab-8A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVA5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.520e-10
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:  778 DDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            D +DH I+ILLLGDSGVGKTSLM RF++++F P ++STAGVDFKVR
Sbjct:  529 DRYDHHIKILLLGDSGVGKTSLMLRFADNQFQPNLMSTAGVDFKVR 574
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A5B8MUA6_9CHLO (Small rab-related GTPase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUA6_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 6.160e-10
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  763 LRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            + ++  D+DH I++L++GDSGVGKTSL+ RFSED F  + IST G+DFK++
Sbjct:    1 MARQRQDYDHVIKLLVIGDSGVGKTSLLLRFSEDSFTTSFISTIGIDFKIK 51
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A7L4EWS0_HIRRU (RAB13 protein (Fragment) n=35 Tax=Aves TaxID=8782 RepID=A0A7L4EWS0_HIRRU)

HSP 1 Score: 64.3 bits (155), Expect = 6.210e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  784 FDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVRS 918
            +DH  ++LL+GDSGVGKT L+ RF+ED F+ T IST G+DFK+R+
Sbjct:    6 YDHLFKLLLIGDSGVGKTCLVIRFAEDNFSSTYISTIGIDFKIRT 50
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A7S3PN59_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PN59_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.430e-10
Identity = 52/132 (39.39%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:  631 LSKKTLNIVTNLKSHS-------TDVRSREEME---------------------DLEEEKRLXXXXXX---------FKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            LSKKTLNIVTNLK           +V S+EE E                     D  +EK+                  +NL  K +  D+ +++LLLGDSGVGKTSLM RF++++F  +++STAGVDFKVR
Sbjct:   80 LSKKTLNIVTNLKDQVESIGIPVNNVLSQEEFEEEALEAEAVAKAATAANPKASDSGKEKKFNYKSGKATRRTSATKISDNL-MKNEGHDYYVKVLLLGDSGVGKTSLMLRFADNQFQESLMSTAGVDFKVR 210
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A7S2SPF5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPF5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.430e-10
Identity = 30/46 (65.22%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  778 DDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            +D+D+ +++LLLGDSGVGKTSLM RF++++F P ++STAGVDFKVR
Sbjct:  272 EDYDYHVKVLLLGDSGVGKTSLMLRFADNEFQPNLMSTAGVDFKVR 317
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: A0A7R9U6W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6W6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.120e-10
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  799 RILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            R+LLLGDSGVGKTSLM R+SEDKFAP ++STAGVDFK+R
Sbjct:  126 RLLLLGDSGVGKTSLMLRYSEDKFAPVLLSTAGVDFKMR 164
[Close]
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Match: W7U9Z1_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Z1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.700e-10
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  793 TIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGVDFKVR 915
            +IRILLLGDSGVGKTSLM R+SE++FAP ++STAGVDFKVR
Sbjct:  105 SIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVR 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9313.18313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN2_9PHAE5.390e-7659.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX24_ECTSI1.240e-6178.85Rab8C, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A836C8W2_9STRA2.330e-1080.49Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A2R5GVA5_9STRA2.520e-1071.74Ras-related protein Rab-8A n=1 Tax=Hondaea ferment... [more]
A0A5B8MUA6_9CHLO6.160e-1054.90Small rab-related GTPase n=1 Tax=Chloropicon primu... [more]
A0A7L4EWS0_HIRRU6.210e-1060.00RAB13 protein (Fragment) n=35 Tax=Aves TaxID=8782 ... [more]
A0A7S3PN59_9STRA6.430e-1039.39Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2SPF5_9STRA6.430e-1065.22Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7R9U6W6_9STRA7.120e-1082.05Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7U9Z1_9STRA7.700e-1080.49Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=42... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9313contigL-elsbetiae_contig9313:1228..7695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue2.6e-52
Seed eggNOG ortholog2880.D7FX24
KEGG koko:K07901,ko:K07903,ko:K07976
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Exons4
Model size918
Cds size918
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9313.18313.1prot_L-elsbetiae_contig9313.18313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9313 1228..7695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.3088489-CDS-L-elsbetiae_contig9313:1227..13711622817001.3088489-CDS-L-elsbetiae_contig9313:1227..1371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 1228..1371 -
1691683973.9633389-CDS-L-elsbetiae_contig9313:1227..13711691683973.9633389-CDS-L-elsbetiae_contig9313:1227..1371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 1228..1371 -
1622817001.319755-CDS-L-elsbetiae_contig9313:3794..38991622817001.319755-CDS-L-elsbetiae_contig9313:3794..3899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 3795..3899 -
1691683973.9772933-CDS-L-elsbetiae_contig9313:3794..38991691683973.9772933-CDS-L-elsbetiae_contig9313:3794..3899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 3795..3899 -
1622817001.3297493-CDS-L-elsbetiae_contig9313:4960..51761622817001.3297493-CDS-L-elsbetiae_contig9313:4960..5176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 4961..5176 -
1691683973.9956267-CDS-L-elsbetiae_contig9313:4960..51761691683973.9956267-CDS-L-elsbetiae_contig9313:4960..5176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 4961..5176 -
1622817001.339872-CDS-L-elsbetiae_contig9313:7242..76951622817001.339872-CDS-L-elsbetiae_contig9313:7242..7695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 7243..7695 -
1691683974.0088165-CDS-L-elsbetiae_contig9313:7242..76951691683974.0088165-CDS-L-elsbetiae_contig9313:7242..7695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9313 7243..7695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9313.18313.1

>prot_L-elsbetiae_contig9313.18313.1 ID=prot_L-elsbetiae_contig9313.18313.1|Name=mRNA_L-elsbetiae_contig9313.18313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
APVPPAGPDTPAPPLAAAAAGTGTPKHDHNGSSPSPSCRSAAVPSVLADD
ELWGPPPGARRPYQARRSTGGGGGGGGGAATAAAAVSPPWAGGAGTDELG
GDAGATGGPGGVAARGTGPGRMESAAEAAGAAAGLGGEGVAGVLPGPAAG
RPTSTPRRKRTSTSGINRERQFDGTVTGGSGSSRFGGGGGGGGGGGAGRR
RSGPGNGRGGLSKKTLNIVTNLKSHSTDVRSREEMEDLEEEKRLAEEERR
FKENLRQKGDDFDHTIRILLLGDSGVGKTSLMTRFSEDKFAPTMISTAGV
DFKVRS
back to top

mRNA from alignment at L-elsbetiae_contig9313:1228..7695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9313.18313.1 ID=mRNA_L-elsbetiae_contig9313.18313.1|Name=mRNA_L-elsbetiae_contig9313.18313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6468bp|location=Sequence derived from alignment at L-elsbetiae_contig9313:1228..7695- (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGTGCCACCCGCGGGCCCGGACACGCCGGCGCCCCCGCTGGCTGC
CGCCGCCGCGGGCACCGGCACCCCCAAACACGACCACAACGGCTCCTCCC
CTTCCCCTTCCTGCCGTAGCGCTGCCGTGCCGTCGGTGTTAGCGGACGAC
GAGCTCTGGGGGCCGCCGCCGGGGGCCAGAAGGCCTTACCAGGCCAGGAG
AAGCACAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGACGGCAGCTG
CAGCGGTATCGCCGCCGTGGGCAGGAGGGGCAGGCACCGACGAGCTTGGC
GGCGACGCTGGTGCCACGGGTGGACCCGGGGGGGTGGCGGCTCGTGGCAC
GGGGCCGGGGCGAATGGAAAGCGCGGCGGAGGCAGCGGGGGCTGCTGCGG
GCCTGGGGGGCGAGGGAGTTGCCGGGGTTTTGCCGGGACCAGCGGCGGGG
CGGGTGAGAGCGATACTTGCTGGAAGGGTGGTACAGGTTTTACCCGTGGG
AACAAAGTACCTTGCTGGAGCCAGAGACCGAATACTCCAAGTAATGATCA
ACAATCAGACCGTAAAATTGGGGCACAGCGGAGGGAAAAATCTGGCACAG
ATATACCCCCACCAATGACCGCCGATATGACTCAGAGTATGACCCCACCA
TTTCTACACAATAGTCTTGGAACATGATGAAGGATGCAGAACTGGCTCGT
GTACACACAGCGTACATTCACGCTGAGCGTCTCGGTCTTGGCGGTTGTCG
TGACGGCAAGAGAGCTCGGGTTTCGTGACTGGGAGGCCTTCCGGCGTTTT
TAGCGTACATATACATACATACGCGGGCGGGTGTGTTTGTGTTGGCCCCC
GTCCTTTCCCTTAAGCGGCCCCGAGTGCAAGCACGTTGCTCTCCCTGGAC
CGCGAGTCTGAAGTTAGACAACCGGGTGGCCGGACCTCTCTGTAAGCAAA
ATCTTTTGGATATGAAAATCGTGCCGCGTCTTGTGTTCTGTATATACCCC
GTAAGTTTCGAAGTATGTACGTCTGCTCCCCTGCTGTTCATTGCTTATCT
GCTTTCCACTGCTGCGTGAAGTGTCCAAGCATTCGTTCGCAAGCGCCCTT
TGCCTTTTGTCGGCGTATTCGTCGCGCGCACGCCTGAAGATGTTTGTAAA
TTGCCGTGTACCTCGGCGAAAGATGTGCAGCAGTACTATTACTAGCAGCA
GCAGCAGCAGCAGTAGCAGCAGCAGCGGCAGCAGCGGCAGTCAGTGGCTT
GGGGGATAAAAACCACAGTAGATGACAACATCACGACATCAAGGGAGGGT
TTCTTCCCGGAATACATGTTGCTTGACCTGGCAGAGATGCAGGGGAGACG
GTATAAATTCTTCCTATATTTTAGGTGTTTTTCTACTCGGCCGGCCCAAT
ATTACGTCACAATGTACATATGGTCCGTGCACAACAATTTGTCCAAAATT
TCCCCAGCACGGATGACAACTTTTCTCTGGACACGGGTGGTTGGTCCGAA
ATCCGAAAGTACCGGCAAACGCCCTGTCTCCAGGCGCACAACCTGACGGA
GAGTTTTTTTTTTTTTTTTTCTTCCTCGACTTTTTATCAAATAATAACCG
GGAAAACTTGTTTCGTTTACAGAGGGCGGGGTTTTTTGCCGATTCGAAAA
AACTCAACGGATTTGCACAGATCTCGGGATTTGCCAGGTGTTTTTTTTTT
TAAAATAGTTTGAAATGGTGAAGATATCAACCAAAAACCGAATCTGAAGG
GTGAAGTTGTTTCGTTTACAGCGCAATAACTAGCCGTACGATTTCAAAAT
AGAGTGCGGCAAACGATTCCTCTCGTCAATCCCGAGGTGGGTATTTTTTA
TTTTGTCCGGGGAAAATCGGGTTGCCGAGAAAATCCACATTTAATTTTGC
AGTCATTCTTCAGTAAAGTTTGGGGGTTCAGCAGTTTCCGACGGGGCTTC
GTGATATTGAAGGGGGCTCCGTGGCAAGTAAAGGGGGCTCTGTGAGGCGA
AAATAGGCCGAAAATGTTGCATTTCGCCAAAATTAAAAAAACTCTGCAGC
TATCGACGCAGTTTTTCGAGGCGGTCACGAATATCGCTGTTTCACGTTAC
AAATATGTTTCTAACAAAAGTTATCGCACAAAACGCGATTGGACAAATTG
TTGTGCACGGACCATACATGGAATACACACCGACTGAATCTCACGGAGCC
CCCTCTCAATGCGGGTTGGGTTCCATTTTTGAGTAACTGCTGTTGTTTCT
CTTTCAAAACAAGCCTTGGTCAGACGACAGACGTGCACCGTTTGGGTCGG
CCCCGTTCGTTGCACACAGGAAACATCGAAATACCCCCCACCCTGCACCT
GCGCCCCCAAACCCCCAACCCTCATTTCATTCCACTGCCGCCACTCACGC
GTTTCTTAGAATCTCTCTTGAAAGAATCGCCATGTGTGCCTGCCTGCCTG
CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTCCTTCTCTTGC
ACCAAACCCCGAAATACAGCCCACTTCGACGCCAAGGCGCAAGCGCACGA
GTACGAGCGGCATCAACCGAGAGCGCCAGTTTGACGGGACTGTCACCGGG
GGGAGCGGGAGCAGCAGGTTCGGCGGGGGCGGGGGCGGGGGAGGAGGGGG
CGGAGCGGGGAGGAGACGGTCGGGCCCGGGTAACGGCAGGGGTGGGCTCT
CTAAGAAGACGCTCAACATTGTCACCAACCTGAAGGTGCGCTGATTTTTG
CTTCGCCGTGGGAGGGGTGAGGGGACGCCGGGAGAGTAGAGAGTCACTTG
TCGGGCTGTGTTTTTCCTAACCCTAACCCTAGAGTAGAGAGTTGTTGTAT
TTTGTTTTGTTTTTCCTCCCATTATTGGCTATTCATCGTCTGCCCCGCTG
GCCTCCTTCCTCCACTACGACTACAAAGCTAGATGACCCAACCGGGGTCA
TACGTGTGTGTGTGTGTGTGTGTGTTTGTGTATGTTGTGTTCTTTTTTTC
CTTCGCAGCGGCGATGAGACGACCCGTGGAGGACGACAGGGTACGGGGGG
GGGGGCGCGGTGTCTGCGAAGTGTGTTTCATTCGCTCGAACCGCGAATAC
ATAGTAAGGTAGCGTGTGCTCGTGGTGCGAGATCGTCGCTTGCAATTCTT
TCTTTTGTTGTGGGGGGGATTTTTGCTGCCTTCTATCGATGTGTATGTGG
CAATTTTTGGAGAACCACGCTGCTGTCAATATGACAGTTAGTCGTTCCGC
TCCGCCGGCAGCCCTATGTATCGGCAACACGATTTCGCCGCGAAAGAAGG
CACTGTGGTGTGGCTAATTACTGTTGTTCCCGTAGAAATTTGTTATCGTA
TGGTACCACCGCTATGCCTGCCACTGCCACTGCTACTGCTACTGCTACTG
CTACTGCTGCTACTACTGCTGCCTCCTCCGCGCTCCCTCTTGTTGCGGAT
CATGCTCGAGACTGCTGGCCTCGGCTCCTCTGGGTTCCACACCACCGACC
GGTCCAGTCCATGAGAAGGAAGATCACAAGAAGGCACCGACCGCCGTGTG
GTTGACGCTCCTGCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GCCCCCCCCCCCGCGGGGGGGCGGCGGTGTTTTGGGGGGGGGGGTTTGTT
TGTGGGGTCTTTTTCCTCCTCCGAAAANNNNNNNNNNCCCCCCCCGCCCC
CCCCTTGCCACCGCTGGCCGTTCTCTGATTTTTTTTTGTTGCTGTCGTTC
ATTTGTCGTTGTCTCTCTTTCCTCCGCGATACAACAAAAAAAAAAGAGCC
ACAGCACCGACGTACGGTCCCGCGAAGAAATGGAAGACCTGGAGGAAGAG
AAGAGGTTAGCCGAGGAGGAACGGCGGTTCAAGGAGAACCTGCGGCAGAA
GGTGCGCGGGGTCGAGCACAGGACGGGAGTTTGTAGAGGAGAGGATGGGG
GGTCTATGTACAGGAGGGGTGTACACGAAGCGCCGTCAAGGTGTGGTCGC
GGAGAGGAATTGAACAGCAGGGTGTGTGCTGGATAGAGAGTTCGGGGCGT
TTTTTTAGTGTGAAGACAACAACAAATATGAAACGCCGTCAAGGTGTGGG
TGCACACGAGAGGAGAGGAGAAGGGGGAGTGGCGAGGGGTTTTGGAGGGT
GCGTATGAAACACCAGCAAGGTGTGCGTGGGTGGACACGAGAGGCGAGTT
TAGAGGAGAATACATTTAGAGGGGGTTTGGAGGGTCAGCACGAAACACCA
TCAAGGTTGTTGTTTTTGTTTCCTTGGCATCAGCTCGTATAATCGAGATT
GCTAAAAAATAAGTAATCTAAATAATAGCAACCCGCGTCCCGTGGTCACG
AAAGTGCTGGAGCCATCAAAAAGGGTCCTAAGAAACACACGCAGGAAATG
AAAGGTACACCGAAAGTTCGAAAGTGTGGTCCTGGGGAGGACAGGAGAAG
AGAGGAGTTGTTTAAGAGGTGTGTATGAAACACCAGCAAGGTGTGTGTGG
ACACGAGAGGAAAGTAGAGTAGTTCAGAGGGTGTGTGCGAAACATCACAA
GGTGTGCGTGGACACGAGATAGGAGAGGGGAGGAGAGGGATCTAGGGGGT
ATTCCGCCATTGTGCGGTCTGTAGCACCCCCCCCCCCCCTGGGCCGACTC
TGAGAGCTCGATTCCTCCGCAACAAAAGGATATCAATGCCAAACGACACT
TTCTCGGGAGCTATCGAGCGATCTTTTCAACGCCACCCTCCTCTTCGGTA
CTGACATTCTTCTTGCTCGTGGAGGATACTTGAGCTTTTTAAATTGGGCC
TAGTGGGGTGTGCAATAGCCCCGCACAACTACGGCGGTGTATGAGACACC
GTCCAGTCTGCATGCAATTCGCAGCCTCGGGGATGGGTGTTGTTCTCTGC
TGGCACTGCTGGTGGCAGGGGGTGCCGCATATCGTAGCTTCTCGTTGAGG
GCCGCGCCGCCTTCAAAGAACGCACTCCCCCCCTAGACAACGGCCAGCCT
GTGCTGCTGTTGCTGCCGTCGTCACGCGGCGCGGGGGTTTGTCAAGTGCT
GGCATCTAATCATTCATGCCGTACGTACATCACAACTGCTGCAAGAAACT
TGATATAATAGACCCATCTACCGAACACCAAGCCGCATCCAATCTACCGA
ACGCCAAGCCGCATCCGACCATGTTCCACATCTAGCGGGACACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCTCGGCGGCCCTCGG
TTTTGTTGGGGTTGTTGAGGGGTTGTGGNNNNNNNNNNAAATAGTCCCCA
TTACCGCACCCCCAGCCCCGCTCCATCCTCCGAACGCCCCGCCCCCACCG
CCCATTTTTCCCCCCTAGGGGGGCCCCCCCCCCCCCCCCCCCACGACCAC
CCCTGGCGTGCTGCTGCTTAAGGCATTTCTGGTTTAGATAGGTATTAAGT
AGGTATGCATGTACGAGTCGAAATTTTGTTTCATGCGAGGGAGAAGGCAT
ACCTTGCCTGCAAGTTCGGAGACGGCGAAACAAGCCTCTCTGGTTGTTTT
AGCGTCGTGTGTGTGTGTTTTCCTCGCTTTTGAGGCGCGCGTGCGGTGGC
AGTATCGAGATGGAAGGAGCGTGCTTAATTTAAGGGCTTGCGCCGTCGTG
TGTTCTGCGTGTTTTTCCCATCAGCCCAATCAACCCCCCCCCCAGACACT
TGGGAAAAGCGTCTGCGATCCAATGCCTAAACGCCGCCGCCCTTTTGCTC
TCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATCC
ACCCTTTCCTGTACGTGCATGCATGCATACATGAACGTGACGCGGCCGAA
CCGGATCGAAGTTGTTCCTGTTTACCTATATACAGTAGTAGTACCGTATG
CGATACAAGATAACACACACCCTGGGCCGATTTTCAAAGCTCAAGTACTC
CCCAGCGACAAGGGTGTCAGTCCCGAAAAGGGCGGCGTTGGAAAAGATCT
CATGAAGAGCTGCCCAAAAACGTGTCGTTTGGTGCGAAAAATAATATATA
CCGTTGCGGAGTAAATTATCTATCCAATCGAGCTTTGAGAATCGGTCCAG
GGGGTGTGCTATCTATTGTCGTACATATTCGGTAGATGTATTCAGTATTC
ATAGAGTTTCCGCTGCTGCGCGTCGTATATACGCATGTACGTACCTAGCA
AACCATGTGTCGACTCTGAAAGAAGAGGCAAGAGAAATGGATTCGATTCG
CTTACATATAAATGTGGGAACGACGCTAAATTTCATATCTAATTAAAAAA
AAAAAAACGTTTCCATTTTATCAGGGCGACGATTTCGACCACACCATTCG
CATCCTTCTACTCGGCGACTCCGGCGTGGGCAAGACGAGCCTCATGACCC
GCTTCTCGGAGGACAAGTTCGCCCCTACGATGATCAGCACGGCCGGGGTG
GACTTTAAGGTGCGATCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9313:1228..7695-

>mRNA_L-elsbetiae_contig9313.18313.1 ID=mRNA_L-elsbetiae_contig9313.18313.1|Name=mRNA_L-elsbetiae_contig9313.18313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig9313:1228..7695- (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGTGCCACCCGCGGGCCCGGACACGCCGGCGCCCCCGCTGGCTGC
CGCCGCCGCGGGCACCGGCACCCCCAAACACGACCACAACGGCTCCTCCC
CTTCCCCTTCCTGCCGTAGCGCTGCCGTGCCGTCGGTGTTAGCGGACGAC
GAGCTCTGGGGGCCGCCGCCGGGGGCCAGAAGGCCTTACCAGGCCAGGAG
AAGCACAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGACGGCAGCTG
CAGCGGTATCGCCGCCGTGGGCAGGAGGGGCAGGCACCGACGAGCTTGGC
GGCGACGCTGGTGCCACGGGTGGACCCGGGGGGGTGGCGGCTCGTGGCAC
GGGGCCGGGGCGAATGGAAAGCGCGGCGGAGGCAGCGGGGGCTGCTGCGG
GCCTGGGGGGCGAGGGAGTTGCCGGGGTTTTGCCGGGACCAGCGGCGGGG
CGGGCACCGGTGCCACCCGCGGGCCCGGACACGCCGGCGCCCCCGCTGGC
TGCCGCCGCCGCGGGCACCGGCACCCCCAAACACGACCACAACGGCTCCT
CCCCTTCCCCTTCCTGCCGTAGCGCTGCCGTGCCGTCGGTGTTAGCGGAC
GACGAGCTCTGGGGGCCGCCGCCGGGGGCCAGAAGGCCTTACCAGGCCAG
GAGAAGCACAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGACGGCAG
CTGCAGCGGTATCGCCGCCGTGGGCAGGAGGGGCAGGCACCGACGAGCTT
GGCGGCGACGCTGGTGCCACGGGTGGACCCGGGGGGGTGGCGGCTCGTGG
CACGGGGCCGGGGCGAATGGAAAGCGCGGCGGAGGCAGCGGGGGCTGCTG
CGGGCCTGGGGGGCGAGGGAGTTGCCGGGGTTTTGCCGGGACCAGCGGCG
GGGCGGCCCACTTCGACGCCAAGGCGCAAGCGCACGAGTACGAGCGGCAT
CAACCGAGAGCGCCAGTTTGACGGGACTGTCACCGGGGGGAGCGGGAGCA
GCAGGTTCGGCGGGGGCGGGGGCGGGGGAGGAGGGGGCGGAGCGGGGAGG
AGACGGTCGGGCCCGGGTAACGGCAGGGGTGGGCTCTCTAAGAAGACGCT
CAACATTGTCACCAACCTGAAGCCCACTTCGACGCCAAGGCGCAAGCGCA
CGAGTACGAGCGGCATCAACCGAGAGCGCCAGTTTGACGGGACTGTCACC
GGGGGGAGCGGGAGCAGCAGGTTCGGCGGGGGCGGGGGCGGGGGAGGAGG
GGGCGGAGCGGGGAGGAGACGGTCGGGCCCGGGTAACGGCAGGGGTGGGC
TCTCTAAGAAGACGCTCAACATTGTCACCAACCTGAAGAGCCACAGCACC
GACGTACGGTCCCGCGAAGAAATGGAAGACCTGGAGGAAGAGAAGAGGTT
AGCCGAGGAGGAACGGCGGTTCAAGGAGAACCTGCGGCAGAAGAGCCACA
GCACCGACGTACGGTCCCGCGAAGAAATGGAAGACCTGGAGGAAGAGAAG
AGGTTAGCCGAGGAGGAACGGCGGTTCAAGGAGAACCTGCGGCAGAAGGG
CGACGATTTCGACCACACCATTCGCATCCTTCTACTCGGCGACTCCGGCG
TGGGCAAGACGAGCCTCATGACCCGCTTCTCGGAGGACAAGTTCGCCCCT
ACGATGATCAGCACGGCCGGGGTGGACTTTAAGGTGCGATCGGGCGACGA
TTTCGACCACACCATTCGCATCCTTCTACTCGGCGACTCCGGCGTGGGCA
AGACGAGCCTCATGACCCGCTTCTCGGAGGACAAGTTCGCCCCTACGATG
ATCAGCACGGCCGGGGTGGACTTTAAGGTGCGATCG
back to top