mRNA_L-elsbetiae_contig93.18296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig93.18296.1
Unique NamemRNA_L-elsbetiae_contig93.18296.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig93.18296.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.880e-77
Identity = 198/247 (80.16%), Postives = 215/247 (87.04%), Query Frame = 1
Query:    1 RAALAVLKARRDQKILEWEMALRVQAAWRGRAAKMVVLAMRILLEQARQKAAATTIQSFWRAVRARHLTTIQRAMFKIRQIQGGASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRHLRSLEHKARPLLLKLDEVTENAARLSERAGLLARTAEPLRAEHITIREELYHIRHTTDKYTDSDKASVNGCRQRFLTKFLQVRLVEVKKNVEGRLDKIDREVIEIEA 741
            RA LA LKARRD KILEWEMAL+VQAAWRGR AKM+V+ MRIL EQARQ AAA TIQSFWRAVRARHL TIQRA+FKIRQ+Q     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   K+HLR+LE KARPLLLKLDE+T+NAA+LSER   +    EPLRAEH+TIREEL+HIRHTTDKYTDSDK  +NGCRQRFLTKFLQVRLVE+K NVE RL+K+D E IEIE 
Sbjct:  744 RAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRILREQARQNAAAITIQSFWRAVRARHLATIQRALFKIRQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECKQHLRALESKARPLLLKLDELTQNAAKLSERQRFVVTAVEPLRAEHVTIREELFHIRHTTDKYTDSDK--INGCRQRFLTKFLQVRLVELKANVEERLEKLDAETIEIEV 988          
BLAST of mRNA_L-elsbetiae_contig93.18296.1 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 7.280e-69
Identity = 144/247 (58.30%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    1 RAALAVLKARRDQKILEWEMALRVQAAWRGRAAKMVVLAMRILLEQARQKAAATTIQSFWRAVRARHLTTIQRAMFKIRQIQGGASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRHLRSLEHKARPLLLKLDEVTENAARLSERAGLLARTAEPLRAEHITIREELYHIRHTTDKYTDSDKASVNGCRQRFLTKFLQVRLVEVKKNVEGRLDKIDREVIEIEA 741
            RA LA LKARRD KILEWEMAL+VQAAWRGR AKM+V+ MRIL EQARQKAAA TIQSFWRAVRARHL TIQRA+FKIRQ+Q GASK                                                                 LKLDE+T NAA+LSER   +A   +PLRAEH+ IREEL+HIRHTTDKYTDSDK  VNGCRQRFLTKFLQVRLVE+K NVE RL+K+D E IEIE 
Sbjct:  677 RAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRILREQARQKAAAITIQSFWRAVRARHLATIQRALFKIRQMQDGASKGECALCVWKGK------------------------------------------------------LKLDELTHNAAKLSERQRFVATAVKPLRAEHVAIREELFHIRHTTDKYTDSDK--VNGCRQRFLTKFLQVRLVELKANVEERLEKLDAEAIEIEV 867          
BLAST of mRNA_L-elsbetiae_contig93.18296.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.770e-15
Identity = 126/256 (49.22%), Postives = 153/256 (59.77%), Query Frame = 1
Query:   19 LKARRDQKILEWEMALRVQAAWRGRAAKMVVLAMRI------------------LLEQARQKAAATTIQSFWRAVRARHLTTIQRAMFKIRQIQGGASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRHLRSLEHKARPLL-----LKLDEVTENAARLSERAGLLARTAEPLRAEHITIREELYHIRHTTDKYTDSDKASVNGCRQRFLTKFLQVRLVEVKKNVEGRLDKID 717
            L+A R ++   W  A+R+Q  WR R A+ V+  M+                   L  Q    AAA TIQSFWRAVR R L+ +Q A+   R+++  A+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +R LR++E +ARPLL     L   E  E+AA    RA     T EP R     + EEL H   T D YTDSDK S  G  QRFLTKFLQVRL E++   + +L  ++
Sbjct:  718 LRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRA-----TLEPERLRAQALAEELDHAVVTKDLYTDSDKLS--GVPQRFLTKFLQVRLQELRAASDAKLKALE 966          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig93.18296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8U9_ECTSI1.880e-7780.16Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5KKL6_9PHAE7.280e-6958.30WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CGM1_9STRA1.770e-1549.22WW domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig93contigL-elsbetiae_contig93:880..11614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.5
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D7G8U9
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-15_004330.1
Exons6
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig93.18296.1prot_L-elsbetiae_contig93.18296.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig93 880..11614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.9068308-CDS-L-elsbetiae_contig93:879..10111622816999.9068308-CDS-L-elsbetiae_contig93:879..1011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 880..1011 +
1691683972.9528098-CDS-L-elsbetiae_contig93:879..10111691683972.9528098-CDS-L-elsbetiae_contig93:879..1011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 880..1011 +
1622816999.927088-CDS-L-elsbetiae_contig93:2022..21521622816999.927088-CDS-L-elsbetiae_contig93:2022..2152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 2023..2152 +
1691683972.9709613-CDS-L-elsbetiae_contig93:2022..21521691683972.9709613-CDS-L-elsbetiae_contig93:2022..2152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 2023..2152 +
1622816999.9383197-CDS-L-elsbetiae_contig93:4066..41941622816999.9383197-CDS-L-elsbetiae_contig93:4066..4194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 4067..4194 +
1691683972.9826088-CDS-L-elsbetiae_contig93:4066..41941691683972.9826088-CDS-L-elsbetiae_contig93:4066..4194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 4067..4194 +
1622816999.9491456-CDS-L-elsbetiae_contig93:5604..56701622816999.9491456-CDS-L-elsbetiae_contig93:5604..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 5605..5670 +
1691683972.9917924-CDS-L-elsbetiae_contig93:5604..56701691683972.9917924-CDS-L-elsbetiae_contig93:5604..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 5605..5670 +
1622816999.9649446-CDS-L-elsbetiae_contig93:7818..79831622816999.9649446-CDS-L-elsbetiae_contig93:7818..7983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 7819..7983 +
1691683973.0003753-CDS-L-elsbetiae_contig93:7818..79831691683973.0003753-CDS-L-elsbetiae_contig93:7818..7983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 7819..7983 +
1622816999.9781592-CDS-L-elsbetiae_contig93:11470..116141622816999.9781592-CDS-L-elsbetiae_contig93:11470..11614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 11471..11614 +
1691683973.009601-CDS-L-elsbetiae_contig93:11470..116141691683973.009601-CDS-L-elsbetiae_contig93:11470..11614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig93 11471..11614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig93.18296.1

>prot_L-elsbetiae_contig93.18296.1 ID=prot_L-elsbetiae_contig93.18296.1|Name=mRNA_L-elsbetiae_contig93.18296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
RAALAVLKARRDQKILEWEMALRVQAAWRGRAAKMVVLAMRILLEQARQK
AAATTIQSFWRAVRARHLTTIQRAMFKIRQIQGGASKEIQRVYRGFKGRL
RAKARRRVFESDLGRNAAAMVIERVFRGHKGRERFECKRHLRSLEHKARP
LLLKLDEVTENAARLSERAGLLARTAEPLRAEHITIREELYHIRHTTDKY
TDSDKASVNGCRQRFLTKFLQVRLVEVKKNVEGRLDKIDREVIEIEASPQ
RDYF*
back to top

mRNA from alignment at L-elsbetiae_contig93:880..11614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig93.18296.1 ID=mRNA_L-elsbetiae_contig93.18296.1|Name=mRNA_L-elsbetiae_contig93.18296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10735bp|location=Sequence derived from alignment at L-elsbetiae_contig93:880..11614+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCTGCACTGGCCGTGCTTAAGGCGAGGAGGGACCAGAAGATTCTCGA GTGGGAGATGGCGCTCAGGGTCCAAGCCGCCTGGCGCGGCCGCGCCGCCA AGATGGTGGTCTTGGCGATGCGCATCTTGCTGGTGAGCGCGCACATTCAT ATGTAGGACTGGGCCCTCTTCCGAAAAACTCGATCTGGCGTTTATGGAGT GCCGCGGAAGCCCGCGCGCTTGGTCAGCATCGGAGGGCGCATCTTGAGAA CAATGACTATTGGGATACCCGTAGCAGGTCACTGCTCTCGGGGGCGGGCC CCCCAATAGCGATCGCCCTAACAGAGGGCCTCTAGACCATAGGCCCACCC AATAGCGCTCGCCCTAACAGAGTATCTCTTTCAGGCCACCCAATAGCGCT CACCCTAACCAAGGTACCTCTTTTAGGCCGCCCAAAAGCGCTAGCCCTAC CAGAGTATGTCTTTCAGGCCGCCCAATAGCGCTGGCCCTAACTGAGTATC TCTTTCAGGCCACCCAATAGCGCTCACCCTAACTAAGGTACCTCTTTTAG GCCGCCCAAAAGCGCTAGCCCTACCACAGTATGTCTTTCAGGCCGCCCAA TAGCGCTGGCTCTCACTGAGGTACCTCTTTCGGGCCACCCAATAGCGCTC ACCTTACCAGAGTATCTATTTCAAGCCACTCCAAAGCCCTCGCCCTAACT GAAGTAGGAGTACCTCTTTCAGGCCACCCAATAGCGCTCGGCCTTACTGA GGTACCTCTTTCGAGCCACCCAATAGCGCTCGCCCTTACAGAGCGTCTAC TTAAGGTTAAATAGCCGATGAACCCACCCACAAGCACCAGCCACCCACTC ACGCACGCTCATCGATTCCTCCTTTCTTACTTGTTCTTGAACGGAGCTCT CGCGCCCGGCCCTCTTCCTCGCGCACGCTTATCAGCATCCCGCCCTCTTG CCTACTCTTGAACGGAGCTCTCTCACCCCCGGCCCTCTGTCCCTTCCATC CGCCGCCGCCGCCGCCGCTGCTGCTGCCGCTGCCGGTGCGTAAATCACTG CTGCGTGGCTTCGTGGCTGTACTCTTTGCTGCTTGCTGTCTGTTCGGGGC TGCCTGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTTTGTGCAGGAGCAAG CCCGGCAGAAAGCCGCAGCGACCACGATCCAGTCCTTCTGGCGGGCGGTG CGGGCGAGGCACCTGACCACCATCCAGAGGGCCATGTTCAAGATCAGGCA GATACAGGGCGGGGCTTCGAAAGGCGAGTGCGATTATTTAGAATATTGTT TTTTTTATGCTGCTTAAGGCTGCCGCGGCCCGCGTGATGCTGTGTTTCAG GAGCTGCAACAGTGTGCATTTTCCCGCAGGGAGGTCCGGAGCGGGGGGCT TCGGGAGGCGAGTGAGTGCTGTGTCCACAGGAGTGAAATCCATAAATTTC TACGGAATATTGTTTTCTTTCAAAACAGGATCGAAATGACATATGTAGTA CGCAGTGTATGAAGACCGCAGATGTTTTTTTTATGTAGCTGTTATTTTAT ATATGGTAGCAACTCATGGCCCGTGGCCACAAAAATGCAGGAGCCATCAA AAATATATTTAAGGCCAGAAAACACCCACCCCAGGGCTGTGGGAAAGCCG AGCTTGATACGCAACACAGTGGTCCTTGGACGCCTTGGCTTTGAGACTCA ACCCCGTGCAAAATCCCAAAGTTGTTTTGGCGTACAGATGGGTAGTGCCA ATAAGCCGGGTTTTTTAACCGAGGCCGGGATTTTTTTTTCTCCGTGGGAT AACCAGAGGGTTGCTCTTGACATCTCGAATGAGGGTAACTACCTGGTAGC AGTGCTGAAGACCGGTCCGAATATGAAGTTTGATACTTCGAAGTACAATT GTTTTTAAGTAATTATCGACAAATAAAAACGCAAACATTTACGGTAGTTT TTTGGGATTAGCAATCTCGATTATACAAGCTAATGTGAAGAAAACAACAA CATATCGCTACATAGTAGACTGAAAAGTTGGTCTGCACTCAAAAGCTAAT CCGCCCACTCCCCGGCGATCGGTTCGACCTCTCCGGGTATCGTGGAGGCC GTACGCGACACAAAATAACACACCCCCTCGACCGATCTTCAAGGCTCGGT TACTCCGCAACGAGTATGTTTCTAAAATAAAACAAAGAATCAAAGATGGA ACCTACCCCATACTAGAGCAAAGACTCGATATGGGGTTCAAACGGTATTC CATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAAACAACCTAAAT ACAGAAGAATTCAACATCTCCCCTCTGCAGAGATTTAAGATTCGCGAGGT CGGCCAACAATTTTTCAGCGGGTAGAGCCCACCGTGATGCCGTAATGTTG TCATCTACTTCTATTACCAAACGACACGTTTTCGGACAGCTGTTGACGGG ATATTTCCAACGCCGCTTTTTTCGGGACTGGCACTCATCTCGCTATGGAG TACTTGAGCTATGAAAATCGGTCCCAGGGGGTGTCTTAACCCTGGTACAT AGGCGACATGGTAGAGGAACGGTAGAGGAACGGTAGAGGAACCAACAAAC ATGCATGCCTCTGTGTTCCGGTTGGACTCTGTATGTGTGTGTGTGTGTGT GCGTCCTGTATTTATTGTTTTTTATCCGTAGGGTACGGGCCTGGCCGGCG AGAACCCGGCGCGGAACCCCCCGGCTTTGTTGGGGTACCAAGATAGTGGT GTTGGCTGTTCCAGTTTTGTTTTACCTCACTATAGCGTGTAGAGGGGAGC TCCAGAATCTGTTTTATTATTGCTTTGCTGGCCCTTCGGGTCCATTTTAT TTTTCGTGTACCTTTTCTTGGGTAAAAGTTAGCCTGTGACAACGGGAGTT GACCACATCAAGTGTTGGATTAGTACGGACATTGAGAGGTACTGGATGGA GAGATCGGAACAGTTTTTTAATGTGAAGACAACATACATCCATACAGGGT TCATACCACCCCTTGTGTGGCCCCCGCTGCTCCCTCCAGTTGCGCACTCA AAAATATACCGGAATGTGTCAGCGCAATGCCCCGAAACGTGCGCACTGTA GTCAAGGTGGACAGACACCAGAATAGATGGGAAAACACACACACACACGG ACACATTGTAACGTCAAAATACCGAATAATCGCGCAGAAATTCAACGAGT GTACCGCGGGTTCAAGGGGAGGCTGCGCGCCAAGGCCCGCAGGAGGGTCT TTGAGTCGGACCTCGGGAGAAACGCGGCGGCCATGGTCATCGAGAGGGTC TTTCGCGGACACAAGGCAAGCGAGCTGCTTCACATAAAAAACAAATTTGT TGTTGTGTGGCATGACAGTAACAGCAGCAGCAGCAGCAGCAGGAGCAGCA GCAGTGCAGATCAATCACGGATAAAAGATGTAGCATTCCCTGCAGCTTTA TATCTAAATAGGCAGGGGGATTCTGCGGGATTCAAAATGCCTTCCACTTA GTGTAGCCGAGTCTTAATTCGAAGCTATTTATGTATGAACTGTGTTTAGT GGTGGAAGCATTGCAGACCAAAACAAGTTGTTGTCTGGGTTTTCGAAGCT CAAGCTGGCAAAGGAAAACCGAAAATTAACGCCCCGCTGTCGGCAAATCA AAAACTCTGTTTTCCTGGACCGGCGTGATGACAGCAGTGCATACCGTAGG TGACGCAGGATGCCACACCCCCTGGACCGACTTTTAGAGCTCAAGAGTAA TATACTCCGTATCGAAGAGAGGGCGCCAGCACCAAACGACATATTTTCGG ACAGCCCTCGACTAGATCTTTCCAACGCCACACCCTTAAGGCAGCACTGG CACTCTTCTTCTTGCTGGGGAGGAATCGACCTTTGAAAATATGTCTAGGG GGTGCGTGACATCTTGGTGTGTGTCACCCACGGTATGTGTGTACGTCTAC ACTTACCCCTTTCCGATACCCGTATAAGAGTACAACATAAGATAACACAC CCCCTGGACCGATTTTCAAAGCTCAAGTACTCCGCAGCGGGAAGAGTTGA CAGTCCCGAAAAGGGGGCGGCGTTGGAAATATGAAATATCTCATCAAGAG CTGTCCGAAAACGCATCGTTTGGTATCAGATTCATACTCGTCGAGGAACA ACCGAGCTTTGGACAATCGGTCCAGGGGGTGTGTTATCTTGTGTCGTATA CAGTAGATGCGCGTACTCACTGTACATGGCCCCGCATTTACGAATCGTGC GCGGACATGAAGTCCCCAAAATATACATGCGTATAGGTTGAAAATTCCGT GGGTGCAGGATCTGTGGGTTTGTTGGGCAAGCCACTTAAGGGCACTGGAA CGAGGCTTTTCAGGAGACGTTTCAGGCTGGCGACGCACGTGGCGACGTAC GCCAGTCTGGCTCTTTACTGTGACACGTCAACTCATAGTGTTGCGCAACT CGAACAGCAGTCAACACCGTTCTCTTGCTTCGCCTCCTGAATTGTTCCCG ATCATGAGCGACGTCTGAAACGGGGGAACTTGTATTCAGTAACAATTCCA TCCTCCCGCTGCGGCTCGGTGCTCATGTATTAACGCCGGATAACCGCCGT AGCATTTTTCAGCGACGACACTATTGACACGAACTCAGTCCTCCTGCAAT ACAGCTGCCGATCACCGATCACGCTCTCACTGACACCTCCGACCCCTGTG TAATCGACACTACCATGCACGCCAGGGCCGGGAGAGGTTCGAGTGCAAGA GGCACTTGCGGTCACTGGAGCACAAAGCACGCCCTCTTCTGGTGAGCCAG CCTAACACAGGCTCTTTTTCCCTGGCCTTGCGGATGGATTTATTTTGCTC GTATTTAATCGACTGAACAAAAAAAAAGGCACAAACTGCTGTTGGCCTGA TTGGTTTGATTCGCGAGCGGGGAACGAACCATGGGGGGCCCGAAAGCAGG AACAGCCGGCAGTCGTGTTCGCCAAGCGTACTTTCGGTCGGAGGCGCTCT CTCGTGTACCGTAAGCGTGGGTTAGCTCGCACATAGGGGTGCGGTGGTTT TCCAGGGGGCCCGGTATCTCGGCAATGGGGAGGGGGGTGCCGATGTCAGA GGGGGCGTTCGTTGTGTATTGGGAAGATCTTGCCGAGGCCTTTCCAAAAG TCGGGTTTTCGAGACCGGTGCACTCCCCGTTGTCGAGATATCGGCCCGTG CAATACTTCGTCACTATATGGAGTACGGCATGAATTCCACGGAGCCCGTC CCTAATGTGGGTTAGTTAGGTTCCATTTTTGGTTTTAACCGATTTTCTTT CAGAAGACGCCGAAGGCAAGCACCGCAGGAACGTTACCCTATGGAATACC GGTTGAATTCCACGCATCTCTTGTGTGGGATAGTCTTCCTGCAATAGGGC CCCCACTCTCAAAAAGAGCTGTGGGAGCAGCGGGGGGGGGGTATATTGAT GTAGGAAATATTTAGAGTGAAAATCCCTACACAGCCACTTTTTCAGAATT CGGGGAAATATTTAAAGAGTGAAAAATCCCTCCCAGCCACTTTTTCAGAA TTCGAGGAAATATTTCGAGTGAAAAACCCCCCACAGCCGTTCTTTCAGAA TTCGGGGAAATATTTAGAGTGAAAAATCCCCCACAGCCACTCTTTCAGAA TTCGGGGAAATATTTAGAGTGAAAAATCCCCCACAGCCACTCTTTCAGAA TTGGGGGGCCTGCTGCAGGTAGCCTACGGCGCCCCTGTGCGAACTCACAC ACACTCTAGGTACGTCGCGATAAAAACATAACAGGCAGGCATCGCAGGAG GGGGTCCACCCTGCCCTTCCTGTGTGACCCCGGTTGGGTCGTCTAGGCCA GTCGTAGTGGAAGTATGGGGGCCAGTGGGGCAGACGACGAATATGCCAAA AATGGGAGGAGAAAATAATAATATAATGTCCTACAAATTTTGTGGTGCAG CCCAATAATCTTTGTCGGCCTCGTGGAGAAGTGGTTGCTTGGGGCCTTAG TTAGCGGCATGGGCTGCTTGCTCGTGGCATCCCTCATCAGAGGCATCACG ACACACTTGTGTGTCAGAGGCATCACGACACTTGTGTGTCGACTTTGGGC GTGCGTTGCAGTACACTCTTTGCAAATCTTCCGCTCTGACAGCATTCATT TTCCGCCGGCGCTGCCTCTACACGCGAGGGCGCGTGCGGACCTGCTGCCA CCGCCACAAAACGATCGTGGATGCCCTGGGGGTTTCTCGTTTCACGGATG GGTGTGTGGGGGGGGGGCACGCAGACCCACGCGAGGCTTGGAGGTCTCTC GTTTGATATGAAGAGAGTTGGGGTCGACCCGACCCTCCTGTTCTTTCTCC AGTCTTCGACGTGAAGCCGCCTCTACTTCGGAAAAAAAAACAGTTTTTCA CCTGCCGCAAAACCGGTCAATTGCGAAAAAAAGAAACATTTTACTTGCGC GCATAGCGAGAGCGGTGTTTCACCAAAAAACAGACTCTTTTGACTTTTCC GAACGCCGACAATTTCAGCGAGCCCTCAACTCAGCACCTTCTCTTTTACA AGTGCGCGCCATTTTCTGTGGCATTTAGATGGCAGACAAAAAAAACACCA CCATAGAAAAGCAAGTGTCGCTTTCGGGCTCTTTGCTCTGCTAAATATAT ATATAAAAAGAGCTATTTACTTCATGACAGCCAACAACCCCAAGGATCGA CCGAGGCATTTTGGTACAATATCGGTTCTTATTGTTTCAAAGCGCAGACA TCGATTTTGCGGTGAGAGGGGGAGGGCGGCTGGACAGACATTGTGCCCGT TCGCTCGAAAAACGTTTTTTTTTGTTTCAAAGCGCAGACATCGATTTTGC GGTTAGAGAGGTCAGCTGGACAGAAATCGTGCCCGTTCGCCCGAAAAACG TTTTTTTTTTCCGCACGCCCGCCCGCCCGCCCGCCGCAGCTGAAGCTCGA CGAGGTGACCGAAAACGCAGCGAGACTGTCCGAGCGCGCGGGCCTCCTGG CGAGAACCGCGGAGCCCCTGCGGGCGGAGCACATCACCATCCGGGAGGAG CTGTACCACATCCGCCACACCACGGACAAGTACACGGACAGCGACAAGGC AAGCGTTTTGTTTTTGTTTTTGTTTTTGTTTTTTAAGTGTTTTGGGGCTA ATTATGTAAGTGTCAGCGGTCTGCAGTATTGCACACGTCCATCCTGGGAA GAACGTGGTTCCAGGGGGAGGGGTGACTGCTGTAGACGCACACTGCTGTC CCTCCTCGTACCGGACGACGGTGGAACAACACCCGCAGTCCGTGAGTTGT TGTGTTGTTGTTGGTTTCGTTGTTGTTGTTTCTCACATTAGCTATCTAGT CCAAAAACATCTTTGGGGGCCCGTGGTCACAAAAACACTTAAGGGGGCAC ACTCGACGCCGCTTGTTCAGCTCTTATGGATTTTGCTTGTTTGGGGGGGG GTGTGTTGTCGAACGTCTGGGGTGTGGTATCTTCAGGATTTTCGCGGTAT CGATCGCTCTTCTGGCTTCAGACCAAGCGATGCCCTTGCCTTTCAGCACA CGAAGTGCCTGCCGCCCGGCTGCCAGCTTTTTTATAAATAAAGTCACCCA CCTTTGAATCTGGCTGAGCCGAGTCGAAAGAGGAGATACACTTTGTGATG AGCCTCACTGCCTCGGGAGAGACGATGTGGAAGAACGCATCGTGCTTCTG ATTTTTTATTTTTTATTAACGAACGCATATGTATGTATGCAGGATACATC TACCCGACCTTACGTCGGCCAGACGTCTGGCATTGAAACTTCTTACTGAC GCTGCTATCGGCGTCAGAAGTGAAAAAAAAAAAAACGGTGCTGGAAAACG TGCGGGTATCCGTGAGAAAAACGGTGCTGGTAAACGTGCGGGTATCCGTG AAAAGAAAAAAAACAAAGGGGAGGTTTGTTTGAAGCGGCGAGAAAAACAA AGCCAGGTTTATTGAAATCGTCGAATTTCCGCAGAATGAGCCAGGGAGTA TGTAGAAGGCTACGTACCAGGGACCCCCTTGAACAAAAGATTGCCGATCA ATCTCTCTACCGGAAGCCAAAAGTCCACGAAGAGTGCTTGGGCGTGAAAG AGAGTAGCGCAGAACCATAGAGTAAGGTGGACACGTATGTAGAAGGGCTT AGGTTAGCTGGCCGGCCTGAGGCGACCAGAAGTCGAGCGCTCGTCGTTTC TGTTTTCTTTCGTGTGACCACGGTTCAGTGCTGAATCTTGCTCGCGATAA AAAAAACCTAGGCAGGCACCGCAGGAGGGGGTCCAACCCCCCCCTCCTAT GTGACCCCGGCTGGGTCGTCTAGCTAGAGTAGAAGTGGAGGATGGGGGCC AGAGGGGCAGACGACAAAAGCCAATAATGGGCAGACAAAAAAAAAAAAAA AGTACTCCGGCAAGATATCCTCGTGACAGGGAGCCCATCGAGCGTACTGG ACATAGATGTGAAGAAGAGAAAAAAAAAAAGTCGAGCGGCAGAAGAGGTG TCGACGAGGTTGCCGCGGCTACAGGCCTTGCTCGCTCTCACTCTCTCGCC CATGTTGTAGTGTACTGCCCATCGTCGGCGTGGAACCGTCGCCGGCAAGC AGGCGTTTGTTGCCCTGGCCAATCACGAGACCGCGTACCGATTTTCAAGG CTCGATTACTCCTCAACGAACAGGGCGTCAACACCAAACGGCACGTGTTT TGTCGAAACTTTTGAAAGAACACGATTCAGCCGCAATTTTAGCCATCCTG GTGATCCCCAGACCAAGGGAGAAAAAATGGATCTAAAAAACAAACATGAC GGTAGCCTAACTTTACGCCATTTATAGACCGGTTTTTATTGGAGCACAAA GTCGCCATGAAAGCTAAAGATTCTGAACTTTCCTCTCCAACTTTGTGATG TAGGCTCTTCATGGGAGCATAAAGTTGCGGAACATTCACTCTGGTGATAA AAAAGTCGCTCGATCGCGAGTAGATAAAAAATTTGCAAATGTTTGACGAG CAAAATTTGGCGAAGAAACGTTGAGCGGTGGGACTTCAGCCAATCCACGT CAAGCACCTACTCCTCCCACACAAACTAACCCTCTCCCGCCACGCGCACG CATGCGATGGATGCACGCACCAGATGAACGGCCGAGTCAGACTGCTTGAA GGAACAAGCCGAGATTGCCTGCGATGGCCGCAGCTATGTAGAGTACACGT GTATTGAATCCGCGTCAACACTTTTCGTCGAACGAAAGCACGATTGAGGT CTTCCTAGTTTCGATTGAAATGCATGATACTGAGTTCGATGCCCCCAGCT CAATTCCCATGCTTTTGTGGGAAAATTTGGCCGTATCTGGCAGGTTTCGC GTTGTGTATGAAAAGGTGTGCTTGCTACTTACTCACTCAATAAGAAAACA GGAATCACGCCTCCGCATTCCAACAGTCCTGTGAACAAATTGTTGATCGC CCATAAAGAGCGTGCGAACAATTTTCTCTGACAAAAGCTCCCGACACACA AAGGTGGGAAAAAAATTGAACTTTGTTGGCAACTTTGTGCTCCCATAAAA ACCGGCCTTAGGAGCCACACGCAATAAACCAAAATGGAAGACAGGGAAAA AAAGGGAAGAAAAAAAACTAATTTCTACAAAAAAAACGATTTCTCGACAA CTAGAGTTTGTCTACTATAATAGCAGGTATTGCTGAGAGGATCTATTTGC TATGCCCTGTTGATAAACCGTTTGGTTAGTCATCGCGCAGTAAACAAAAC CGCTTTGCCCAGGTTCGAGTTTTGGACGATAGGTACATACTTTTCTATTG TAAATAGCGAGAACAAAACTTTTTTCTCGCAAAAACACAACACACCCGAT TATCGAACTCAGGGATCGAATGCCGCAGCGTTTTTTGAGTTCGGCTGTTT AGTTGTTGCACACAAAGCAAAACGAATCATATCTGCATATTGTTCTCAGA TGGAAAGTTAAGGCAGAAAAACTCTCCATCACGAGCTGCGCCTTGAGACA ATTAAGGCGTGTGCCGATGCTTTTCAGATTTCGGAATAACAAGCACCACT ACTGTGAGGACAAAAGTATACCTGGGTGCTGGGATTTGCTTTAGACAAAC TGCTGTTGCACGGACCATACACACTTACATACATCGATCAGTGTATTTAT AAGATGTTCTCTCAGCCGACTACGTGGTTCGCTTTTTACCTCATGGCTGA GTGGTCGAATCCCTTGACTATATGGCGTCGTCGGCAGGACACCAACCTGC GCGTGAAATCACAATGGATTGCCCGGGCCATGAGGTAAAAAGTGAACCAA GTATATACTCGGCTGAGAGTACTTGGTTAATCCCTTGACACCAGGAAATA AAAAGATGAAACCGAAACCTCCCCGTCATCAGAGACCGCGCTCTACATGA GTATTCATTTCGAGCGATATTCCATGCAGTGAGTGTGATCTCCCCCTTTG CCCTGACGGACTTTAAATTGTCATACGTGTATGTATGTACGTTTGACAAT CGGCTGTTCCTCGGGCCATCCGCCGCCGCTCGCCCACCCGGCGCCGGGCG CGTTCGAACTATTTATCGGCCGGTTTTACATTTTCGGCCAGGTTAACGGG TGTCGGCAGCGCTTCCTGACCAAGTTCCTGCAGGTGCGGCTGGTGGAGGT CAAGAAGAACGTGGAAGGACGGCTGGATAAAATCGACAGAGAAGTGATCG AGATCGAGGCAAGTCCACAACGGGATTATTTCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig93:880..11614+

>mRNA_L-elsbetiae_contig93.18296.1 ID=mRNA_L-elsbetiae_contig93.18296.1|Name=mRNA_L-elsbetiae_contig93.18296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig93:880..11614+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCTGCACTGGCCGTGCTTAAGGCGAGGAGGGACCAGAAGATTCTCGA
GTGGGAGATGGCGCTCAGGGTCCAAGCCGCCTGGCGCGGCCGCGCCGCCA
AGATGGTGGTCTTGGCGATGCGCATCTTGCTGAGGGCTGCACTGGCCGTG
CTTAAGGCGAGGAGGGACCAGAAGATTCTCGAGTGGGAGATGGCGCTCAG
GGTCCAAGCCGCCTGGCGCGGCCGCGCCGCCAAGATGGTGGTCTTGGCGA
TGCGCATCTTGCTGGAGCAAGCCCGGCAGAAAGCCGCAGCGACCACGATC
CAGTCCTTCTGGCGGGCGGTGCGGGCGAGGCACCTGACCACCATCCAGAG
GGCCATGTTCAAGATCAGGCAGATACAGGGCGGGGCTTCGAAAGGAGCAA
GCCCGGCAGAAAGCCGCAGCGACCACGATCCAGTCCTTCTGGCGGGCGGT
GCGGGCGAGGCACCTGACCACCATCCAGAGGGCCATGTTCAAGATCAGGC
AGATACAGGGCGGGGCTTCGAAAGAAATTCAACGAGTGTACCGCGGGTTC
AAGGGGAGGCTGCGCGCCAAGGCCCGCAGGAGGGTCTTTGAGTCGGACCT
CGGGAGAAACGCGGCGGCCATGGTCATCGAGAGGGTCTTTCGCGGACACA
AGAAATTCAACGAGTGTACCGCGGGTTCAAGGGGAGGCTGCGCGCCAAGG
CCCGCAGGAGGGTCTTTGAGTCGGACCTCGGGAGAAACGCGGCGGCCATG
GTCATCGAGAGGGTCTTTCGCGGACACAAGGGCCGGGAGAGGTTCGAGTG
CAAGAGGCACTTGCGGTCACTGGAGCACAAAGCACGCCCTCTTCTGGGCC
GGGAGAGGTTCGAGTGCAAGAGGCACTTGCGGTCACTGGAGCACAAAGCA
CGCCCTCTTCTGCTGAAGCTCGACGAGGTGACCGAAAACGCAGCGAGACT
GTCCGAGCGCGCGGGCCTCCTGGCGAGAACCGCGGAGCCCCTGCGGGCGG
AGCACATCACCATCCGGGAGGAGCTGTACCACATCCGCCACACCACGGAC
AAGTACACGGACAGCGACAAGGCAAGCCTGAAGCTCGACGAGGTGACCGA
AAACGCAGCGAGACTGTCCGAGCGCGCGGGCCTCCTGGCGAGAACCGCGG
AGCCCCTGCGGGCGGAGCACATCACCATCCGGGAGGAGCTGTACCACATC
CGCCACACCACGGACAAGTACACGGACAGCGACAAGGCAAGCGTTAACGG
GTGTCGGCAGCGCTTCCTGACCAAGTTCCTGCAGGTGCGGCTGGTGGAGG
TCAAGAAGAACGTGGAAGGACGGCTGGATAAAATCGACAGAGAAGTGATC
GAGATCGAGGCAAGTCCACAACGGGATTATTTCTGAGTTAACGGGTGTCG
GCAGCGCTTCCTGACCAAGTTCCTGCAGGTGCGGCTGGTGGAGGTCAAGA
AGAACGTGGAAGGACGGCTGGATAAAATCGACAGAGAAGTGATCGAGATC
GAGGCAAGTCCACAACGGGATTATTTCTGA
back to top