mRNA_L-elsbetiae_contig922.18240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig922.18240.1
Unique NamemRNA_L-elsbetiae_contig922.18240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig922.18240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig922contigL-elsbetiae_contig922:14885..17473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size713
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig922.18240.1prot_L-elsbetiae_contig922.18240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig922 14885..17473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.8839636-CDS-L-elsbetiae_contig922:14884..151961622816994.8839636-CDS-L-elsbetiae_contig922:14884..15196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 14885..15196 -
1691683968.9777324-CDS-L-elsbetiae_contig922:14884..151961691683968.9777324-CDS-L-elsbetiae_contig922:14884..15196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 14885..15196 -
1622816994.894977-CDS-L-elsbetiae_contig922:15486..155281622816994.894977-CDS-L-elsbetiae_contig922:15486..15528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15487..15528 -
1691683968.9875617-CDS-L-elsbetiae_contig922:15486..155281691683968.9875617-CDS-L-elsbetiae_contig922:15486..15528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15487..15528 -
1622816994.9053607-CDS-L-elsbetiae_contig922:15689..157831622816994.9053607-CDS-L-elsbetiae_contig922:15689..15783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15690..15783 -
1691683969.0000556-CDS-L-elsbetiae_contig922:15689..157831691683969.0000556-CDS-L-elsbetiae_contig922:15689..15783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15690..15783 -
1622816994.9157305-CDS-L-elsbetiae_contig922:16272..164541622816994.9157305-CDS-L-elsbetiae_contig922:16272..16454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 16273..16454 -
1691683969.0114937-CDS-L-elsbetiae_contig922:16272..164541691683969.0114937-CDS-L-elsbetiae_contig922:16272..16454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 16273..16454 -
1622816994.9319975-CDS-L-elsbetiae_contig922:17392..174731622816994.9319975-CDS-L-elsbetiae_contig922:17392..17473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 17393..17473 -
1691683969.0196874-CDS-L-elsbetiae_contig922:17392..174731691683969.0196874-CDS-L-elsbetiae_contig922:17392..17473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 17393..17473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig922.18240.1

>prot_L-elsbetiae_contig922.18240.1 ID=prot_L-elsbetiae_contig922.18240.1|Name=mRNA_L-elsbetiae_contig922.18240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
CGVADCGKAAVGGSDLCTGHGGGKRCQFPDCPKSAQSKTNFCVRHGGGRK
CSMAGCLKVARGRTEHCAAHGGGVRCCVDSCNKAAVGRERMCRSHQRKSK
NAAAAGGGGALSATPASMPRLPSLANRSACSPLAPRSRSASPAAGSLSVL
SAAAATRSVNDFLEPGMDGGSGDGGGGGGGRRGDRVATPAMMHHSLSAPS
SLSSSSGTAAAAAIAATTAAAAAAAATTGRSAAYGSA
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mRNA from alignment at L-elsbetiae_contig922:14885..17473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig922.18240.1 ID=mRNA_L-elsbetiae_contig922.18240.1|Name=mRNA_L-elsbetiae_contig922.18240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2589bp|location=Sequence derived from alignment at L-elsbetiae_contig922:14885..17473- (Laminarionema elsbetiae ELsaHSoW15)
TGCGGGGTGGCGGACTGTGGCAAGGCGGCGGTCGGCGGGTCGGACCTGTG
CACGGGGCACGGGGGAGGCAAGCGTTGCCAGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG
TGTGTGCGTGCGTGCGTGCGTGCGTGCCTTTGGAAGAGGAGAGGTTATTT
GTTGGTAGTATTGCGGTTTGTTGGTGTTGTGGCTGTTGTTGTTGGTCTCT
GCAGCAGGCCATTCCAAACAAAATACAGGGTGTTTCACCATGGCGGGGTG
CGCCACAAGGGAAAGCACAAAAAATCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCACCCACACACCACCCGCCCCCCCCCCCCCCCCGCCGACACCCAC
CCAACACCCCCTCATAGCTCGCCGAGTCGCCGCGGGAGCACCCGACAAAA
AAAAAAAGGGGGGGTCCCACATGGGGGGGGGCCCCCCAAGGAAAAAAAAA
AAAAACCCCCCCCCCCCCCCCCCCCCGCTGCATAAGGTTTTGATGGGAGA
AACCACCCCCAAACAGAACAATCGATGTCTGTCTATTTTGGCTGCCCGCC
TGCCTGTTTTTAAAAATAAACAATGAATCAAAGATGGAACCTACCCCCAC
ACCAGAGCAAGGACTCGATATGGGGCTCAAACGGTATTCCATACAGAGAC
GTGATATTTGGCGAAGCGAGCAGAAAAACAACCTAACATATTTTGGCCAT
TCTTCGTCGCATTCTACGCTTTTGTGTCTTGTGTACATGTGTGTCTGCGT
TCCCGCCGACGCCTGCCCCTCTACTCAAACTTACCCGGGGGCCCTGGTCC
ACCACTCTCGTGTTGTCACGCCTGGAGCCTGGATCGGATGAATCACCCCA
CCATTCAATTCCTCGACGGACCCAAACAATTCAACTCACCCGAGGCCCTT
TTCTACCACGCTCGTGTGTCGCTGCTCCTGAATTGAACCGGATAACCCCC
CCCCCGCGTCTCGAACCAGTTCCCCGACTGCCCAAAGAGCGCGCAGTCGA
AGACCAACTTCTGCGTGAGGCACGGCGGGGGCCGGAAGTGCTCCATGGCC
GGCTGCCTCAAGGTGGCCAGGGGAAGAACCGAGCACTGCGCCGCTCACGG
GGGGGGGGTGCGGTGCTGCGTGGATTCGTGCAACAAGGCCGCCGTCGGAA
GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTTTCTG
TGTTTCTGTGTTTTGTGTCGGGACTGCGTGCCGACTTTGTCGAGCTCTCT
CTCTTTGTCGGGTGCTTGATGGTTTAGGAGTTGTCGGGCCGTGCATATCG
AAGGGGCGAAGAGTTGTGTCTATGTCTACTACTACTTGTAGCGTAAGTAT
GCGGCGCGTTTTTTTTTGTTGCCTCGACCTCACGAGCCTCCCCCGCATGT
TGTTGTGTCGCATGCAGCTGTGAGCAGTTGAAAGCATACCGGGAGAGCTC
ACTCCTTCTACACTGAACGGCTACAACGATATACCCGTACGTCTACAGAG
TTTTCTCGGTAGACCACGCTGGTGTGAGCGCACGAGTTAGTTAGTTCTGA
CTGCATTCCATCCCCACCATCACCGCTGCTGCTGCTGCTGCTGCTGCTGC
TGTGTTGTTGCGCGTTATTTACTTGTTGTCTGTTTGGCAGGGAGCGAATG
TGCCGCAGTCACCAGAGAAAGTCCAAGAACGCAGCTGCCGCGGGGGGAGG
AGGCGCCCTCTCCGCAACGCCCGCTTCGATGCCGGTGAGTCAACGGCCCA
GCCGAACGAACTACCCGAATACTCCATGCCAGGTTTTGTTTCGTGAACGC
CAAGGAATTACCTTTCTTCGCGCCGTTCGCTTAACCCGCTGGCACCACCG
TGCGCTCCATGGTAGTGGAATGGATGGGTGTTGCGGTCCTCCCAGCGCCT
TCCTTCCCTAGCCAATCGGAGCGCATGCTCGCCCTTGGTCCTACTGTTGC
ACGGTGCTGCAAGTGCCGTTGACGGCCTTCTTTCATTACCAACGACCACC
CTCCCCGTTCTGAATCCTCGGCAACCGCCCCTTGGCGTTTTTGGTACTCG
GGCCACCACCACTATTTCGTACGCAAAATAAATAGCCGCCAACCGCACAC
GCCCCCCCCTCCTCCCAGTTGTGTCTGTTTTCCTCTCGCCCAACAACTCT
TTACCCTCAAAACCCTCCTCGTCCTCTCTGGCCGGCAAATGGCTTGCCCC
CCCCCCCCGCGTCACCCTTCTATGTAGGCCCCTCGCTCGCGCTCCGCGTC
TCCCGCGGCCGGCTCTCTCTCGGTGCTGTCGGCCGCCGCGGCCACCCGCA
GCGTGAACGACTTCCTGGAGCCGGGGATGGATGGTGGTAGTGGTGACGGC
GGCGGCGGCGGCGGCGGCCGCCGCGGCGATAGGGTTGCAACACCCGCGAT
GATGCATCACTCTCTCTCGGCGCCTTCGTCGCTCTCTTCCTCGTCGGGGA
CGGCCGCAGCGGCGGCGATTGCGGCCACGACGGCGGCGGCGGCGGCGGCG
GCGGCGACGACCGGCCGTTCCGCCGCTTACGGCAGTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig922:14885..17473-

>mRNA_L-elsbetiae_contig922.18240.1 ID=mRNA_L-elsbetiae_contig922.18240.1|Name=mRNA_L-elsbetiae_contig922.18240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig922:14885..17473- (Laminarionema elsbetiae ELsaHSoW15)
TGCGGGGTGGCGGACTGTGGCAAGGCGGCGGTCGGCGGGTCGGACCTGTG
CACGGGGCACGGGGGAGGCAAGCGTTGCCAGTGCGGGGTGGCGGACTGTG
GCAAGGCGGCGGTCGGCGGGTCGGACCTGTGCACGGGGCACGGGGGAGGC
AAGCGTTGCCAGTTCCCCGACTGCCCAAAGAGCGCGCAGTCGAAGACCAA
CTTCTGCGTGAGGCACGGCGGGGGCCGGAAGTGCTCCATGGCCGGCTGCC
TCAAGGTGGCCAGGGGAAGAACCGAGCACTGCGCCGCTCACGGGGGGGGG
GTGCGGTGCTGCGTGGATTCGTGCAACAAGGCCGCCGTCGGAAGTTCCCC
GACTGCCCAAAGAGCGCGCAGTCGAAGACCAACTTCTGCGTGAGGCACGG
CGGGGGCCGGAAGTGCTCCATGGCCGGCTGCCTCAAGGTGGCCAGGGGAA
GAACCGAGCACTGCGCCGCTCACGGGGGGGGGGTGCGGTGCTGCGTGGAT
TCGTGCAACAAGGCCGCCGTCGGAAGGGAGCGAATGTGCCGCAGTCACCA
GAGAAAGTCCAAGAACGCAGCTGCCGCGGGGGGAGGAGGCGCCCTCTCCG
CAACGCCCGCTTCGATGCCGGGAGCGAATGTGCCGCAGTCACCAGAGAAA
GTCCAAGAACGCAGCTGCCGCGGGGGGAGGAGGCGCCCTCTCCGCAACGC
CCGCTTCGATGCCGCGCCTTCCTTCCCTAGCCAATCGGAGCGCATGCTCG
CCCTTGCGCCTTCCTTCCCTAGCCAATCGGAGCGCATGCTCGCCCTTGGC
CCCTCGCTCGCGCTCCGCGTCTCCCGCGGCCGGCTCTCTCTCGGTGCTGT
CGGCCGCCGCGGCCACCCGCAGCGTGAACGACTTCCTGGAGCCGGGGATG
GATGGTGGTAGTGGTGACGGCGGCGGCGGCGGCGGCGGCCGCCGCGGCGA
TAGGGTTGCAACACCCGCGATGATGCATCACTCTCTCTCGGCGCCTTCGT
CGCTCTCTTCCTCGTCGGGGACGGCCGCAGCGGCGGCGATTGCGGCCACG
ACGGCGGCGGCGGCGGCGGCGGCGGCGACGACCGGCCGTTCCGCCGCTTA
CGGCAGTGCGGCCCCTCGCTCGCGCTCCGCGTCTCCCGCGGCCGGCTCTC
TCTCGGTGCTGTCGGCCGCCGCGGCCACCCGCAGCGTGAACGACTTCCTG
GAGCCGGGGATGGATGGTGGTAGTGGTGACGGCGGCGGCGGCGGCGGCGG
CCGCCGCGGCGATAGGGTTGCAACACCCGCGATGATGCATCACTCTCTCT
CGGCGCCTTCGTCGCTCTCTTCCTCGTCGGGGACGGCCGCAGCGGCGGCG
ATTGCGGCCACGACGGCGGCGGCGGCGGCGGCGGCGGCGACGACCGGCCG
TTCCGCCGCTTACGGCAGTGCG
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