mRNA_L-elsbetiae_contig9191.18210.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9191.18210.1
Unique NamemRNA_L-elsbetiae_contig9191.18210.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A6H5KZP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP2_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 9.940e-102
Identity = 189/386 (48.96%), Postives = 214/386 (55.44%), Query Frame = 1
Query:   94 VVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGL-FADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQARPLLLKLEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVAITIDHTWGDCTLCTDGSFPRFHFFSDASLRRVLLQCGHRFHAKCLAGWEKGSMIVCPNCREES 1248
            + VKTL+GK + L + +  TI D+K+ +QD+EGI PD+QRL+FAG QLEDG T S Y IQ  STLHLVLRLRG          G  F DVSDSSGLTE AFSDHAP WR+A PGLCLEGRCTN  C AHG+MVILNH  RDFDL+ PGRD K+ CP C   VVPSTC FT CTWRY+GRKAGET+VL G WKEAG D YHRF   G GEVEWDRLLIQARPLL KLE++                                                                                            VA  IDHTWG C      S     F + ++    +L CGHRFH +CL GWE+GSMIVCP CREES
Sbjct:  272 IFVKTLTGKTVKLVVGSYNTIADIKQMMQDMEGIPPDQQRLIFAGVQLEDGLTISFYNIQGNSTLHLVLRLRGGGFAAPPIAVGAKFVDVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNSDCDAHGRMVILNHGLRDFDLIRPGRDPKR-CPMCNFEVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAG-DSYHRFD--GRGEVEWDRLLIQARPLL-KLEQRVPSAPPADERVERPNTTAISATST--------------------------------------------------------------------VADVIDHTWGRCXXXXXXSA----FGATSASDETVLDCGHRFHTRCLTGWEQGSMIVCPICREES 580          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: D7G3U0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U0_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 3.670e-61
Identity = 126/285 (44.21%), Postives = 142/285 (49.82%), Query Frame = 1
Query:  406 PSWRIARPG----LCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQARPLLLKLEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVAITIDHTWGDCTLCTDGSFPRFHFFSDASLRRVLLQCGHRFHAKCLAGWEKGSMIVCPNCREES 1248
            PS    RPG    LCLEGRCTN  C AHG+MVILNH FRDFDL+ PGRD K+ CP C + VVPSTC FT CTWRY+GRKAGET+VL G WKEAG D YHRF+EGGE  V+WDRLLIQ RPLL KLE++                                                                                            VA+ IDHTW  CT     S     F +  +    +L CGHRFH +CLAGWE+GSMIVCP CREES
Sbjct:    7 PSRTTPRPGGLPRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKR-CPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAG-DSYHRFEEGGE--VQWDRLLIQVRPLL-KLEQRVPSAPPADERMERPNTTANTATST--------------------------------------------------------------------VAVVIDHTWSRCTXXXXXSA----FGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREES 214          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A225VQY5_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQY5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 7.850e-53
Identity = 102/221 (46.15%), Postives = 139/221 (62.90%), Query Frame = 1
Query:   94 VVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFK-EGGEGEVEWDRLLIQARP 753
            + +KTL+GK + +  +++++I +VK++IQD +G  PD+QRL+FAGK LEDGRT  DY I  GS++  VLRLRG         +  FADVSD+S L E  FS +AP WR    GL +EGRC N  C A GKM+I  + F  F+LM   R ++ HCP C   V P TCGF  C W++ G ++ +   +S  WK+A G+ YHRF  +   G VEWD LLI  +P
Sbjct:   75 IYIKTLTGKTLKIHCTSTDSIDNVKQKIQDQDGTPPDQQRLIFAGKHLEDGRTLGDYGIFHGSSVCQVLRLRGGGGPL---TSMYFADVSDNSILREHTFSTNAPQWRSCGKGLNIEGRCENRGCPAFGKMIIYPNRFNPFNLM---RGDRAHCPMCGDDVKPLTCGFYDCVWKFDGIRSSDGFSISSPWKDASGEKYHRFDADEKHGSVEWDSLLIMVKP 289          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.120e-51
Identity = 106/229 (46.29%), Postives = 133/229 (58.08%), Query Frame = 1
Query:   73 LGRKQLKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFK-EGGEGEVEWDRLLIQARPL 756
            +G     + +KTL+GK   +   A+ TI ++K  IQ+ EGI PD+QR++FAGKQLEDGR  SDY IQ GSTLHLVLRLRG            FADVSD S   E  FS  AP WRI R GL +EGRC N  C+A+ ++VI    F  F+L    +D    CPKC   V P TCGF  C W++ G KA      S  W+   G+ Y RF  +   G +EW+ LLI  +PL
Sbjct:   97 VGSSSAMIYIKTLTGKTTHVNCHAANTIEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGSTLHLVLRLRGGYVEPRC-----FADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLR---KDGDVTCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLILVKPL 317          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A815UV84_9BILA (Hypothetical protein n=6 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A815UV84_9BILA)

HSP 1 Score: 189 bits (480), Expect = 1.250e-51
Identity = 99/224 (44.20%), Postives = 135/224 (60.27%), Query Frame = 1
Query:   88 LKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETS----VLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQA 747
            ++V +KT + K + +    S+TI ++K +IQ  EGI PD+QR++F GKQLEDGRT +DY IQ+  TLH+V+RLRG            F D+S+ SGL    +S  AP WR A PGLCLEG+CTN  C A+ + VI+N  F+ FD++L        CP C++ V P+TCGF  C W ++G K G         SG W EA  + YH F E   G V W +L+I+A
Sbjct:    1 MQVFIKTHTCKTLTIECECSDTIENLKYKIQGKEGIPPDQQRIIFGGKQLEDGRTLADYNIQKEFTLHMVIRLRGGDMGVD------FVDLSNGSGLKRLNWSTSAPKWRKAGPGLCLEGQCTNRNCKAYSQAVIMNIRFKKFDMLLDVNQTTCQCPICKEYVKPNTCGFNRCWWCWKGIKEGGAGEPPKACSGNWTEAD-NAYHYFDEKISGSVTWRQLIIEA 217          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: S4W648_9VIRU (Ubiquitin n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4W648_9VIRU)

HSP 1 Score: 196 bits (499), Expect = 4.140e-50
Identity = 97/225 (43.11%), Postives = 142/225 (63.11%), Query Frame = 1
Query:   82 KQLKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQARPL 756
            +  ++ V+TL+GK I +  + + +I ++K  I D EG+ PD+QRL++AG+Q+EDGR  +DY I+  +++HLVLRLRG         +  F D+ ++  +  R +S  AP WRI +PGLC+EGRC N  C A+G+MVI+N  F  FDL+L    +   CP+C+K V P TC F  C W++ G K G++   +G+W  A  D YH F E   G VEW RLLI+AR +
Sbjct:  340 RSFQLFVQTLTGKVITIEAAPANSIEEIKCIIHDKEGLPPDQQRLLYAGQQMEDGRRLADYAIRAEASMHLVLRLRGGGGGPP--ASATFVDMENTGAMQCRQWSKSAPDWRIVKPGLCIEGRCKNVGCAAYGRMVIVNKGFDTFDLLLDA--DTCACPECDKHVKPKTCAFNNCWWKWNGIKEGDSRKYAGKWTLAD-DNYHCFAEDEAGSVEWTRLLIRARSI 559          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A6A3GVD8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GVD8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.960e-47
Identity = 97/222 (43.69%), Postives = 131/222 (59.01%), Query Frame = 1
Query:   88 LKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRF-KEGGEGEVEWDRLLIQAR 750
            L + +K+L+GK        S++I +VK +IQD  GI PD+QRL+ AG QL+DGR  SDYKI+ GS L + LRLRG           +F DVSD+S LTE++ S+ AP WR+   GL +EG C N  C A G+MVI  + F  F+LM    D    CPKC +   P TCGF  C W++ G ++ +   +S  W+ AG   YHRF  +   G VEW+ LLI  +
Sbjct:  118 LVLTIKSLTGKIAIFCAMPSDSIDNVKLRIQDKWGIPPDQQRLICAGVQLQDGRALSDYKIKTGSELLVFLRLRGGGGPRPPRK--VFVDVSDNSNLTEQSLSNEAPDWRVCDEGLNIEGECENRECEAFGQMVIYQYGFDSFNLM---GDRDVECPKCYETFTPITCGFYKCVWKFEGVRSSDGYFISSPWQNAGESKYHRFDSDENSGSVEWNSLLIVVK 334          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A816Y3J2_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816Y3J2_9BILA)

HSP 1 Score: 187 bits (474), Expect = 2.410e-46
Identity = 103/230 (44.78%), Postives = 138/230 (60.00%), Query Frame = 1
Query:   70 RLGRKQLKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETS----VLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQA 747
            RL R  + + V   + K  P A++A+ TI ++K +IQD EGI PD+QR++F GKQLEDGRT +DY IQ+ STLH+V+RLRG            F D+S+ SGL    +S  AP W  A PGLCLEG+CTN  C A+ + VI+N  F+ FD++L        CP C++ V P+TCGF  C W ++G K G         SG W EA  + YH F E   G V W +L+I+A
Sbjct:  471 RLFRDSVILYVPLDNSKLYPTALNAN-TIENLKYKIQDKEGIPPDQQRIIFGGKQLEDGRTLADYNIQKESTLHMVIRLRGGDMGVD------FVDLSNGSGLKRLNWSTSAPKWCKAGPGLCLEGQCTNRNCKAYSQAVIMNIRFKKFDMLLDVNQTTCQCPICKEYVKPNTCGFNRCWWCWKGIKEGGAGEPPKACSGNWTEAD-NAYHYFDEKISGSVTWRQLIIEA 692          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: A0A3M6V6M3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M3_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.080e-45
Identity = 99/223 (44.39%), Postives = 129/223 (57.85%), Query Frame = 1
Query:   88 LKVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKAGETSVLSGRWKEAGGDGYHRFK-EGGEGEVEWDRLLIQARP 753
            + V V TLSGK I +   +++T+  VK +I+D E I+P+ QRLV+AGK L D    S Y I+ G+TLHL LR+RG        V   F DVS++S +T R FS  AP WR+   GL +EGRC N  C A+  M+I   +F  F+LM   RD+   CP C   V P TCGF GC WR+ G    E   +  +W +A GD YHRF  +   G VEW  LLI  +P
Sbjct:   76 MTVFVITLSGKTITINCLSTDTVNYVKMKIEDKESIAPEVQRLVYAGKLLNDQVMLSSYNIKGGNTLHLSLRIRGGSIGHSP-VFRTFVDVSNNSLITARKFSPDAPEWRLVSKGLNIEGRCRNRECRAYRSMIIDRKEFVPFNLM---RDDDIECPICHCEVRPITCGFYGCAWRFEGVTGSENLSICSQWNDASGDMYHRFDPDEVNGSVEWASLLILTKP 294          
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Match: L8HGQ1_ACACA (Ubiquitin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGQ1_ACACA)

HSP 1 Score: 176 bits (445), Expect = 5.940e-43
Identity = 99/230 (43.04%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   91 KVVVKTLSGKEIPLAISASETITDVKRQIQDLEGISPDEQRLVFAGKQLEDGRTPSDYKIQEGSTLHLVLRLRGXXXXXXXXVAGLFADVSDSSGLTERAFSDHAPSWRIARPGLCLEGRCTNELCVAHGKMVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRY----RGRKAGETSV------LSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQAR 750
            ++  KTL+GK I L    +  IT+VK  ++  EGI  D+QRL+FAGKQLEDG    DY I   STL LVLRLRG           LF D+S+++ L  R +S  AP WR+A PGL +EG CTN  C A  + VI+N     FDL+L       HCP C   V P+TC F  C W++    +G +AG+  +      LS   +E   + YHRF E   G VEW RLLI  +
Sbjct:  331 QIFCKTLTGKTITLEAGPAHPITEVKVLVEAKEGIPADQQRLLFAGKQLEDGTCLGDYAIDRESTLQLVLRLRGGGLT----AGSLFVDMSNTNALERRQWSSKAPQWRVAMPGLSVEGVCTNRECEAFDRSVIINKHHGTFDLLLDAHT--CHCPSCGSYVEPATCAFNNCWWKWSGIKKGARAGQPPLHMVWLHLSTNNREQADNAYHRFSEDKAGTVEWLRLLIHTK 554          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9191.18210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZP2_9PHAE9.940e-10248.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U0_ECTSI3.670e-6144.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A225VQY5_9STRA7.850e-5346.15Ubiquitin family protein n=1 Tax=Phytophthora mega... [more]
A0A6A3IE52_9STRA1.120e-5146.29Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A815UV84_9BILA1.250e-5144.20Hypothetical protein n=6 Tax=Rotaria magnacalcarat... [more]
S4W648_9VIRU4.140e-5043.11Ubiquitin n=1 Tax=Pandoravirus salinus TaxID=13494... [more]
A0A6A3GVD8_9STRA6.960e-4743.69Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A816Y3J2_9BILA2.410e-4644.78Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]
A0A3M6V6M3_9STRA1.080e-4544.39Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
L8HGQ1_ACACA5.940e-4343.04Ubiquitin domain containing protein n=1 Tax=Acanth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9191contigL-elsbetiae_contig9191:769..3784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D7FKZ7
KEGG koko:K02983
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-00_007020.1
Exons2
Model size2385
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9191.18210.1prot_L-elsbetiae_contig9191.18210.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9191 1883..2671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.3410788-UTR-L-elsbetiae_contig9191:768..8521622816992.3410788-UTR-L-elsbetiae_contig9191:768..852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 769..852 +
1691683967.068969-UTR-L-elsbetiae_contig9191:768..8521691683967.068969-UTR-L-elsbetiae_contig9191:768..852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 769..852 +
1622816992.3523884-UTR-L-elsbetiae_contig9191:1483..18821622816992.3523884-UTR-L-elsbetiae_contig9191:1483..1882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 1484..1882 +
1691683967.091697-UTR-L-elsbetiae_contig9191:1483..18821691683967.091697-UTR-L-elsbetiae_contig9191:1483..1882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 1484..1882 +
1622816992.3730721-UTR-L-elsbetiae_contig9191:2671..37841622816992.3730721-UTR-L-elsbetiae_contig9191:2671..3784Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 2672..3784 +
1691683967.1139176-UTR-L-elsbetiae_contig9191:2671..37841691683967.1139176-UTR-L-elsbetiae_contig9191:2671..3784Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9191 2672..3784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.362795-CDS-L-elsbetiae_contig9191:1882..26711622816992.362795-CDS-L-elsbetiae_contig9191:1882..2671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9191 1883..2671 +
1691683967.1048388-CDS-L-elsbetiae_contig9191:1882..26711691683967.1048388-CDS-L-elsbetiae_contig9191:1882..2671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9191 1883..2671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9191.18210.1

>prot_L-elsbetiae_contig9191.18210.1 ID=prot_L-elsbetiae_contig9191.18210.1|Name=mRNA_L-elsbetiae_contig9191.18210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
MVILNHDFRDFDLMLPGRDEKKHCPKCEKVVVPSTCGFTGCTWRYRGRKA
GETSVLSGRWKEAGGDGYHRFKEGGEGEVEWDRLLIQARPLLLKLEEKEK
EEDEEDEEAEEEKEDEEDDEDEEDDEEDEEEDEEEDEEDEEDEEDEEEDE
EEDEENEEAEEEPASDQPAAKRAKPSDTTTAATATTATVPVAITIDHTWG
DCTLCTDGSFPRFHFFSDASLRRVLLQCGHRFHAKCLAGWEKGSMIVCPN
CREESPPPPPPQ*
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mRNA from alignment at L-elsbetiae_contig9191:769..3784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9191.18210.1 ID=mRNA_L-elsbetiae_contig9191.18210.1|Name=mRNA_L-elsbetiae_contig9191.18210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3016bp|location=Sequence derived from alignment at L-elsbetiae_contig9191:769..3784+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACTTCCTCTCTCCTGGGCCGCCAGGTGGCCTCTCGTACGTGTTCTC CGGAGAGCCCGCGCTGTTTCGACTGGGCCGGAAAGTGAGAGGGGTGAACC GTACTTATTTTAGGAGGTCGCTCGCACATTTTCCCGACTGTATTTGTAGA AGTATGTACATTGCGACGTTCAGGGTTTCGAGGAGTTCCGCACTACAGCG CGTGTCACTCACCCCCGATGCGGTTGCTTCTAATGTTGCGCTCGACGAGA AAGATGCACGAGAGCATGATTTTAGCACACTTTTCTTTCCGGGGCTTAGA GCGTACGTTTTGCTGCTTTCTCCACCACCGCTGGAGATTTGCGGAGATCT ATGTAGTCTATGGCTCGATCGGCTGAATATATCAAGCGGTAGAGGAAACC ATGCGGGAGGTGGCGCCTAATATTGAGCTCGGTGATTTTATTGGACAGCG TGGAAGGTTTTTGACGCTGCTGGTGTTGTTGGTACGGACGGTTAATGGAC AGCGGAGGGGGGGCATGCGACTGGGAAGATGATGGCGGCGGCGCCTGGCC GATACCCTTTGTTCCCCGACCCGACATGGTGGTACATAGTACATACATGT ATATTTGCCGCCATTGGTTTCCGTTGTCTAACCTGGGGCCCACCCGATGT AATGCTGTTGTGGCACCCCCGCTGAGCTGCGCTTGCCGTCCTTCTTTCTC CCGCCGTAGGAGCAGCAGCTGAAGGTTGTCGTCAAGACTCTGTCGGGAAA AGAGATCCCGCTGGCCATCAGCGCCAGCGAGACGATCACCGACGTAAAGC GCCAGATCCAGGACCTCGAGGGAATTTCGCCGGACGAGCAGCGGCTGGTC TTCGCCGGCAAGCAGCTGGAGGACGGCCGCACACCTTCGGACTACAAAAT CCAGGAAGGATCTACGCTCCACCTGGTGCTGCGCTTGAGGGGAGGAGGAG GAGGAGGTCCTCCGCCCGTCGCCGGGCTGTTCGCGGACGTTTCCGACTCG TCCGGGCTGACGGAGCGCGCGTTTTCGGACCACGCCCCGTCCTGGAGGAT CGCCCGCCCCGGGCTGTGCCTGGAGGGGAGGTGCACCAACGAGCTCTGCG TGGCCCACGGCAAGATGGTCATCCTCAACCACGACTTCCGTGACTTCGAC CTAATGCTGCCCGGCCGTGACGAGAAGAAGCACTGCCCGAAGTGCGAGAA GGTGGTGGTGCCGAGCACGTGCGGCTTCACGGGTTGCACGTGGAGGTACA GGGGGAGGAAGGCCGGGGAGACCAGCGTCTTGAGCGGCCGGTGGAAGGAG GCCGGCGGCGACGGCTACCACCGCTTCAAGGAAGGGGGGGAGGGGGAGGT CGAGTGGGACAGGCTGCTCATCCAGGCCAGACCCCTCCTGCTAAAACTCG AGGAAAAGGAGAAAGAGGAGGACGAGGAGGACGAGGAGGCCGAGGAGGAA AAGGAGGACGAGGAGGACGACGAGGACGAGGAGGACGACGAGGAAGACGA GGAGGAGGACGAGGAAGAAGACGAGGAGGACGAGGAGGACGAGGAGGACG AGGAGGAAGACGAGGAGGAAGACGAGGAGAACGAGGAGGCCGAGGAGGAG CCGGCCTCCGACCAGCCGGCCGCCAAGCGGGCGAAACCTTCCGACACGAC GACCGCCGCGACGGCGACGACGGCCACCGTTCCGGTGGCGATCACGATCG ACCACACGTGGGGAGACTGCACGCTGTGCACGGATGGGTCTTTCCCCCGC TTCCACTTCTTCTCCGATGCGTCATTGAGGAGGGTCCTGCTACAGTGCGG GCACCGGTTCCACGCCAAGTGCCTTGCTGGCTGGGAGAAGGGGTCCATGA TCGTCTGCCCCAACTGCCGGGAAGAGTCGCCGCCGCCGCCGCCGCCGCAG TAGGGTGTGTGGCTGGCTACATGTATGTTTTGGGTGCGTCATAGTAGTCT GACACGTCGCGTGCGTCAGGTCGTTTGGATGAATGAAACGAGATCAGCGC CGAAAGATAGGAAGCGTTTATATGCACGCACCCCGTTTCGGCCCACTCCA CGGCTGGACGGGCCGTTGGATGATGAAATCGTAACCAAATTGGATCCAGC GGCAGTGTGTTTCACTTCATGATCTCTTGTATGCCAACGAGAAATTATTG CTGTCGAGCTTCACACACACTGGCTCCACCGCTATCCTGTCGCCGAGTTG ATGACATGGTCTACAGACTTCGAATTACTCCCTCTCTTGTACCAGAAGTA AAGCCCGCTGCGGGGGGCAGATCAAACCACCCCCAATGGACATGCTCAGT GTCGAACAGCATGGTTATACCACCGGACTACCAGTCAGCGCTGACTGGTA GGTAGTCCAGTGTAGTCCAGTGGTCATCGTGCTTTTCAACACTCAGCACG CCTATAGTTGGATACATTTGGAAGGTGGTCTTGGAGATTTTCGTGAAAGA AGGAGAAATTATACAGCGGCTGAATGCTTGATGAGGATCGTTGTAAGGTA GTCCAGTTTGAGGTAATTTTTGGCCAATTTGGACCATTTTCGGTCGAACT TTGAGAGTTTGCCTCCTTCGCAGTACTGTAGGCAGATACGGTTTCGCGTC TTACATGATTTTTGGACAAGGCGGAGATACTATCTATTGTACAAGGAAGG AACGAAGTGAAAAAATGAGAGCAAAATTTGAGTGTTTTTCGCGCTTGACA ATGTCGTCTTGCCCGCCGGTTTCCAGTTTTTGTTTTTGTTTTTCCGTACA ACATAAGGGGGTCAAAATGCTTTTTTTTTAGTAGGCCGAAGAGGGCTTTT TTCTTCGCCCCATCGTTGACGCAGAGAGTAATGCCAAGGGTTTACAATGC CTAAGAAAACTTGTCTCAGGACGTTGGCCCCATATAACCGTTGGTGGTGT TGTTTGCGGAGGCCTGTGGCCAACATGTGCTTTTGAGGGAGCCCCGCAGA TATCGGTGGCGCGGGGTGGAGATATTCTGAATTAGTTTAGAGTGCACCAA AAGAAGAGGGTGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9191:769..3784+

>mRNA_L-elsbetiae_contig9191.18210.1 ID=mRNA_L-elsbetiae_contig9191.18210.1|Name=mRNA_L-elsbetiae_contig9191.18210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig9191:769..3784+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCATCCTCAACCACGACTTCCGTGACTTCGACCTAATGCTGCCCGG
CCGTGACGAGAAGAAGCACTGCCCGAAGTGCGAGAAGGTGGTGGTGCCGA
GCACGTGCGGCTTCACGGGTTGCACGTGGAGGTACAGGGGGAGGAAGGCC
GGGGAGACCAGCGTCTTGAGCGGCCGGTGGAAGGAGGCCGGCGGCGACGG
CTACCACCGCTTCAAGGAAGGGGGGGAGGGGGAGGTCGAGTGGGACAGGC
TGCTCATCCAGGCCAGACCCCTCCTGCTAAAACTCGAGGAAAAGGAGAAA
GAGGAGGACGAGGAGGACGAGGAGGCCGAGGAGGAAAAGGAGGACGAGGA
GGACGACGAGGACGAGGAGGACGACGAGGAAGACGAGGAGGAGGACGAGG
AAGAAGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGAAGACGAG
GAGGAAGACGAGGAGAACGAGGAGGCCGAGGAGGAGCCGGCCTCCGACCA
GCCGGCCGCCAAGCGGGCGAAACCTTCCGACACGACGACCGCCGCGACGG
CGACGACGGCCACCGTTCCGGTGGCGATCACGATCGACCACACGTGGGGA
GACTGCACGCTGTGCACGGATGGGTCTTTCCCCCGCTTCCACTTCTTCTC
CGATGCGTCATTGAGGAGGGTCCTGCTACAGTGCGGGCACCGGTTCCACG
CCAAGTGCCTTGCTGGCTGGGAGAAGGGGTCCATGATCGTCTGCCCCAAC
TGCCGGGAAGAGTCGCCGCCGCCGCCGCCGCCGCAGTAGATGGTCATCCT
CAACCACGACTTCCGTGACTTCGACCTAATGCTGCCCGGCCGTGACGAGA
AGAAGCACTGCCCGAAGTGCGAGAAGGTGGTGGTGCCGAGCACGTGCGGC
TTCACGGGTTGCACGTGGAGGTACAGGGGGAGGAAGGCCGGGGAGACCAG
CGTCTTGAGCGGCCGGTGGAAGGAGGCCGGCGGCGACGGCTACCACCGCT
TCAAGGAAGGGGGGGAGGGGGAGGTCGAGTGGGACAGGCTGCTCATCCAG
GCCAGACCCCTCCTGCTAAAACTCGAGGAAAAGGAGAAAGAGGAGGACGA
GGAGGACGAGGAGGCCGAGGAGGAAAAGGAGGACGAGGAGGACGACGAGG
ACGAGGAGGACGACGAGGAAGACGAGGAGGAGGACGAGGAAGAAGACGAG
GAGGACGAGGAGGACGAGGAGGACGAGGAGGAAGACGAGGAGGAAGACGA
GGAGAACGAGGAGGCCGAGGAGGAGCCGGCCTCCGACCAGCCGGCCGCCA
AGCGGGCGAAACCTTCCGACACGACGACCGCCGCGACGGCGACGACGGCC
ACCGTTCCGGTGGCGATCACGATCGACCACACGTGGGGAGACTGCACGCT
GTGCACGGATGGGTCTTTCCCCCGCTTCCACTTCTTCTCCGATGCGTCAT
TGAGGAGGGTCCTGCTACAGTGCGGGCACCGGTTCCACGCCAAGTGCCTT
GCTGGCTGGGAGAAGGGGTCCATGATCGTCTGCCCCAACTGCCGGGAAGA
GTCGCCGCCGCCGCCGCCGCCGCAGTAG
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