mRNA_L-elsbetiae_contig9183.18204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9183.18204.1
Unique NamemRNA_L-elsbetiae_contig9183.18204.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9183.18204.1 vs. uniprot
Match: D7G6Y5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y5_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.570e-20
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    7 MQMVTS--PGVNTASVTSTAEGKMATSEATYTAALKKMEAECMADLEKAFDETAKKAKAESDKIWGDLEAEFAEDAE 231
            +QMVTS  P V      ST EGKM ++E TYTAALKKMEAE +A+LEKAF+ETAKKAKAESDKIWGDLEAEFA+D +
Sbjct:   38 IQMVTSATPAV------STGEGKMVSNEETYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVD 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9183.18204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y5_ECTSI3.570e-2071.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9183contigL-elsbetiae_contig9183:2487..3147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011760.1
Exons1
Model size661
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9183.18204.1prot_L-elsbetiae_contig9183.18204.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9183 2493..2723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.6954262-UTR-L-elsbetiae_contig9183:2486..24921622816991.6954262-UTR-L-elsbetiae_contig9183:2486..2492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9183 2487..2492 +
1691683966.5598574-UTR-L-elsbetiae_contig9183:2486..24921691683966.5598574-UTR-L-elsbetiae_contig9183:2486..2492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9183 2487..2492 +
1622816991.721559-UTR-L-elsbetiae_contig9183:2723..31471622816991.721559-UTR-L-elsbetiae_contig9183:2723..3147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9183 2724..3147 +
1691683966.5825455-UTR-L-elsbetiae_contig9183:2723..31471691683966.5825455-UTR-L-elsbetiae_contig9183:2723..3147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9183 2724..3147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.7081923-CDS-L-elsbetiae_contig9183:2492..27231622816991.7081923-CDS-L-elsbetiae_contig9183:2492..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9183 2493..2723 +
1691683966.573217-CDS-L-elsbetiae_contig9183:2492..27231691683966.573217-CDS-L-elsbetiae_contig9183:2492..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9183 2493..2723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9183.18204.1

>prot_L-elsbetiae_contig9183.18204.1 ID=prot_L-elsbetiae_contig9183.18204.1|Name=mRNA_L-elsbetiae_contig9183.18204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MQMVTSPGVNTASVTSTAEGKMATSEATYTAALKKMEAECMADLEKAFDE
TAKKAKAESDKIWGDLEAEFAEDAEA*
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mRNA from alignment at L-elsbetiae_contig9183:2487..3147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9183.18204.1 ID=mRNA_L-elsbetiae_contig9183.18204.1|Name=mRNA_L-elsbetiae_contig9183.18204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=661bp|location=Sequence derived from alignment at L-elsbetiae_contig9183:2487..3147+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGATGCAGATGGTGACATCGCCAGGCGTCAACACGGCGTCCGTAAC
CTCGACGGCAGAGGGGAAGATGGCCACGAGCGAAGCGACGTACACGGCGG
CCTTGAAGAAGATGGAAGCCGAGTGCATGGCGGACCTTGAGAAGGCGTTC
GACGAGACGGCCAAGAAGGCCAAGGCAGAGTCGGACAAGATCTGGGGGGA
CCTCGAGGCGGAGTTCGCTGAGGACGCAGAGGCGTGAGGCAGCAAGCGAG
CAGTGTCAACAACCCCGTCGAGTTTCTGCTTGCGTAACGATCGATGATCG
GTCGATCTATCGAAGCCAATCGAGGCAAAAGTCTTTTTGTCTTGCTCTTG
ATTTTCGCCCCCCTTTTTGCTTGGTTTGGAATGCACGTGTTTTTGTCTTT
TGGTCGCAAACGTTGAAACGGTAGAAACCGTAAATACCTTTCTGTAAGCT
GCGCCCCCCGAGCTCAGTGTCCCCTAACCAGTTAGATCCTGCGGCTTCTT
CGGTGGGCTCGCGCGCTCGTGGTGCTTGTTTATTTGTGCGGGTTTGCTTG
GGAAGCGTTGCTACGTCGTCTCGGGGGGAGGTCGTGGCAAGGGGAGCAGC
AGGAAGATAGGATCGCCTACGGCATGTAGCGAGGAGGGCGCGACGGAGCT
TTCCCTCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9183:2487..3147+

>mRNA_L-elsbetiae_contig9183.18204.1 ID=mRNA_L-elsbetiae_contig9183.18204.1|Name=mRNA_L-elsbetiae_contig9183.18204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig9183:2487..3147+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGATGGTGACATCGCCAGGCGTCAACACGGCGTCCGTAACCTCGAC
GGCAGAGGGGAAGATGGCCACGAGCGAAGCGACGTACACGGCGGCCTTGA
AGAAGATGGAAGCCGAGTGCATGGCGGACCTTGAGAAGGCGTTCGACGAG
ACGGCCAAGAAGGCCAAGGCAGAGTCGGACAAGATCTGGGGGGACCTCGA
GGCGGAGTTCGCTGAGGACGCAGAGGCGTGAATGCAGATGGTGACATCGC
CAGGCGTCAACACGGCGTCCGTAACCTCGACGGCAGAGGGGAAGATGGCC
ACGAGCGAAGCGACGTACACGGCGGCCTTGAAGAAGATGGAAGCCGAGTG
CATGGCGGACCTTGAGAAGGCGTTCGACGAGACGGCCAAGAAGGCCAAGG
CAGAGTCGGACAAGATCTGGGGGGACCTCGAGGCGGAGTTCGCTGAGGAC
GCAGAGGCGTGA
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