mRNA_L-elsbetiae_contig918.18203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig918.18203.1
Unique NamemRNA_L-elsbetiae_contig918.18203.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig918.18203.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.230e-29
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    7 RRFTEVDVTGGEFPQGATMFEAVQLLMWKHAGET-GGEVPITSRGDPWKHRSMPVPREQWGKAITLEFSPRSSSS 228
            RR+TEVD T GE P GATMFEAVQ+LM KHA ET GGEVPITS GD + HRSMP+PREQWGKAITLEFSPRS SS
Sbjct: 1184 RRYTEVDFTNGELPSGATMFEAVQMLMLKHARETAGGEVPITSSGDRFPHRSMPMPREQWGKAITLEFSPRSCSS 1258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig918.18203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE5.230e-2980.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig918contigL-elsbetiae_contig918:4711..8127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size353
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig918.18203.1prot_L-elsbetiae_contig918.18203.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig918 4800..6622 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.610137-UTR-L-elsbetiae_contig918:4710..47991622816991.610137-UTR-L-elsbetiae_contig918:4710..4799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 4711..4799 -
1691683966.5083516-UTR-L-elsbetiae_contig918:4710..47991691683966.5083516-UTR-L-elsbetiae_contig918:4710..4799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 4711..4799 -
1622816991.6509118-UTR-L-elsbetiae_contig918:6622..66301622816991.6509118-UTR-L-elsbetiae_contig918:6622..6630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 6623..6630 -
1691683966.538855-UTR-L-elsbetiae_contig918:6622..66301691683966.538855-UTR-L-elsbetiae_contig918:6622..6630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 6623..6630 -
1622816991.6643522-UTR-L-elsbetiae_contig918:8075..81271622816991.6643522-UTR-L-elsbetiae_contig918:8075..8127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 8076..8127 -
1691683966.5494862-UTR-L-elsbetiae_contig918:8075..81271691683966.5494862-UTR-L-elsbetiae_contig918:8075..8127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig918 8076..8127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.6210775-CDS-L-elsbetiae_contig918:4799..49261622816991.6210775-CDS-L-elsbetiae_contig918:4799..4926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 4800..4926 -
1691683966.5184374-CDS-L-elsbetiae_contig918:4799..49261691683966.5184374-CDS-L-elsbetiae_contig918:4799..4926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 4800..4926 -
1622816991.6352293-CDS-L-elsbetiae_contig918:6545..66221622816991.6352293-CDS-L-elsbetiae_contig918:6545..6622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 6546..6622 -
1691683966.5276017-CDS-L-elsbetiae_contig918:6545..66221691683966.5276017-CDS-L-elsbetiae_contig918:6545..6622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 6546..6622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig918.18203.1

>prot_L-elsbetiae_contig918.18203.1 ID=prot_L-elsbetiae_contig918.18203.1|Name=mRNA_L-elsbetiae_contig918.18203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MFEAVQLLMWKHAGETGGEVPITSRGDPWKHRSMPVPREQWGKAITLEFS
PRSSSSTPTSNQSRNPR*
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mRNA from alignment at L-elsbetiae_contig918:4711..8127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig918.18203.1 ID=mRNA_L-elsbetiae_contig918.18203.1|Name=mRNA_L-elsbetiae_contig918.18203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3417bp|location=Sequence derived from alignment at L-elsbetiae_contig918:4711..8127- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGCAGGAGGTTCACGGAGGTGGACGTCACCGGCGGAGAGTTTCCCCA
GGGTGCGTGCGTAGACTACGCGGCTTGGTGTGTTTGCTGCTTTTTCTTTC
TTTTTTTTCCTTAAACGGATACTTCGTATATCTTTATGGGAGGCGGTCGT
ATTTGTTTTTCTTCGAAAAATATCACAATATCGATATACAAAAACATCGT
CCCGTAAATATCGTCCCATAAATATCGTCCCCTATATATCTTTGTGGGAG
GCGGTCGTATTTTTTTCTTTGGAAAATATCAAAATATCGATATATAAAAA
TATCGTGCCATAAATATCGTCCCATATATATATCTTTGTGGGAGGCGGTC
GTATTTTTTCTTTGAAAAATATCCAAATATCGATATATAAAAATATCGTC
CCATAAATATCGTCCCATACAGTTGCGGCCCGCACTTAAGAACCTCTTAT
TTTGCCCGAGGCTCGGTTCTTATTTTCCCGTGAGGCAGCCAATTTATCTT
TATATAGGTTTTAGAGTGCGGGTTGAGAGCGAGCACGTGTTCTTATGGCC
ATGTTCTTATATATTTATTTTTTTGAGCCTGAAGTTCTTGACGGTCAAGT
TCTTAAGTGCGGGCCGCAACTGTTTACGAGTAGATCTTTGTGGGAGGCGA
TCGTATTTTTTTTGTATTTGTAAAGTATCAAAATATCAAATGCCCAGGAT
AGAAACAAACCACCCGATTACAACGCCACTACTGACTGTGTGTACCCTCA
CAAAAGGTATGTATACGGCTGGAGTTAAAAGAGACAAAAATAAAAAAAAA
TGTCAATATATATTAAAAAAAATATCGTCCCATAAATATCGTCCCCGGAG
AGGGGTTCTCTCCATAGGTTAAGGTTTTCGTTTTTTTTTTCTGACGGATA
CCCACATGTTGACCAGCGCTCGTACAAGGAGGGGCCCCGAGCAAATTTTT
GAAACAGTGACGCACCATTTTGGTCTCGCTGCGTTATGTATGCAGTAACC
GCAGTGGTGTGGGGGGGGCTGTGGTGCCTGCTCTGCAATCCGGGCGGCCC
CTTGCCGCATTAGAGACGGGGTCCCGTGGAAGTCAACCGGTTTTCGGACC
TTTTTTTTATGTGAAGACAACACACACAACTCACAACAGCACACCCCTGC
CCGCCCTCCTTACACTACCAGGAGCCCGATGTTAGACACATTTTGTTTTT
CTTCTAATTTTTTATTCCGCCCATCATTGGCATGTTTTTCATCTGCCCCA
CTGGCCCCCTTCCTCGCCACTACGACTAGCTAGACGACCAACCAGGGTCA
CACAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTGCCTGCCTCAGATGTT
TTTATCGCGAGCAGGCAGGGTTCAGCACTCCCCACTCCCCACCCCCGCCA
ACAATGAAAGTCGAAGTAATATTTACGAACGTGAACACCTCTGTTGACTT
CAAATTTTAGAAACGCCCCTCCCTGCCCGCCCTCCTTACACCACCAGGAG
CCACGATGTTCGAGGCCGTGCAGCTGCTGATGTGGAAGCACGCTGGCGAG
ACCGGGGGTGAGGTTCCCATAACTAGTCGCGGGTAAGTTGAATCAATTTA
GGAAGGATGCCGTGGTACGGAACTATTTTCTGTTGACAAGGGTGGGAGGA
TACTGTATCAAACGGAACAATCCATTTTGGGAGGACGCCGGGATGCGGAA
CCTGTCCTTTGGTGGGCCGGAAAATGGAGGATACCGTAGTATCCGGAACC
GTCTGAGGATGGAACATACCGGCGATACGGAACCATTTTCTGGTCCTGTT
CGCCTCTTTTTTTTCTTTTTTTTTTTGGATAACTTCTTCAGTAAATCAAG
GAGCAGGGACTCCCCCCCCCATACACATATATTCAGGGGTGGGACCCCGT
GATGAACTAACAATTCAATTTACAGTAGTCAGTGAAGTACACAAACTTCG
ACCTCACCGTCGACGTGTAATAGGGACGGCTGAACCCTACTCGCGACAAA
AATCGTAGGCGAGTACCGCAGACGGGGGAAGTGGGGGCCTTGGGGGAAAG
GAACCCTTCTGTGTGACCACGGTTCAGTACTCCGGCAAGATGTCCTCGTG
ACAGGGAGCCCATCGAGCACTGGAAATAAACGTGAAGAAGAAACACACCT
TGAATGTGACAAGTTACAGGTATATGGCAGAGTTCGAAACCTATCGTGCG
TACCGCATACGACGCAAGATAACACACCCCCTGGGCCGATTTTCAAAGCT
CAAGTACACATGTACTATTCCACAGCGAGAAGCAGAGTGGCAGTCTCAAA
AAGGGCGGCGGCGTTGGAGAGATCCCGTCAAGAGCTACATAGCTGCCCGA
AAACATGCTGTTTGGTGTCAGAATCAACTCGTTGCGGAGTATTGCAGCCG
AGCTTTGAAAATCGGTCCAAGGGGGGTTGTTGTTGTTGTTGTTGTTGTTG
TTTTTCTCACATTAGCTCTCTGGTCTTAAACATTAAACACCCTTGGGGGC
CCGCCCGTGGTCACACGAAACAAGGCACACTCGACGCCGCGGAATAAGAA
AAAAATAAATAAAAGAGACAAAAATAAAAAATAAAAATAAAAATGGGTAC
ATGTCATCCTATGTATGTCGGATACATAAATACCATGGTACAGTATACCG
TAGGTGACACAAGATACCACACCCCCTGGACAGATTTCCAAAGCTCGATT
CCTCCCCCGCAAGAAGGGTACCAGTGCCAAAAAGGGTGGCGTTGGAAAGG
TCTAGTCGAGGGCTGTCCGAAAAGGTGTCGTTTGGTGCTGGCAACGTCTT
CGTTACGGAGTAGTGGAGCTCTAAAATTGGGTCCAGGGGGTGTGGTATCT
TGTGTCACCTACGGTATTTAGCTGCAATCCAATCCGTACCTGGCATCCAG
GTTTCGCGCCGCCAATGAAACACGCGTTGTTTGTTGGATAGGTAGTCCCA
CCTTGACAGCTGTGTCCGTATGGGAGTGTGTGCGTGCGTGCTTGACGTCC
TATTCTTTGCAGTGCTGACGCCGCACCGTATGCAAGCCTGAGTAGGTTCG
GTTCGGTACATAAATACTGGTACTGCTGTTGTGATGGGATGAGTCTTGGT
TTGACGCAGTGCCAACACCGAAGATCGAAAGGCGAAGGGCCTCTTACTAC
CATATTTAGGTGACACAAGATAACCCCCCCCCCCCTCCACACACACACCA
GGGACCCGTGGAAGCACCGCTCGATGCCGGTGCCGCGGGAGCAGTGGGGC
AAGGCTATCACGCTGGAGTTCTCGCCCCGCTCCTCGTCTTCCACCCCCAC
CTCAAATCAGTCACGGAACCCCCGATGAGGAAGGGCGGTCGCTGGAAAAA
ACGGGAGCGGCAGTGGTGACGCCGGCGCTTCGTCGGCCACCAACGGCGGC
GGCGGCGGCGGCGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig918:4711..8127-

>mRNA_L-elsbetiae_contig918.18203.1 ID=mRNA_L-elsbetiae_contig918.18203.1|Name=mRNA_L-elsbetiae_contig918.18203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig918:4711..8127- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGAGGCCGTGCAGCTGCTGATGTGGAAGCACGCTGGCGAGACCGG
GGGTGAGGTTCCCATAACTAGTCGCGGATGTTCGAGGCCGTGCAGCTGCT
GATGTGGAAGCACGCTGGCGAGACCGGGGGTGAGGTTCCCATAACTAGTC
GCGGGGACCCGTGGAAGCACCGCTCGATGCCGGTGCCGCGGGAGCAGTGG
GGCAAGGCTATCACGCTGGAGTTCTCGCCCCGCTCCTCGTCTTCCACCCC
CACCTCAAATCAGTCACGGAACCCCCGATGAGGACCCGTGGAAGCACCGC
TCGATGCCGGTGCCGCGGGAGCAGTGGGGCAAGGCTATCACGCTGGAGTT
CTCGCCCCGCTCCTCGTCTTCCACCCCCACCTCAAATCAGTCACGGAACC
CCCGATGA
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