mRNA_L-elsbetiae_contig918.18202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig918.18202.1
Unique NamemRNA_L-elsbetiae_contig918.18202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig918.18202.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.580e-27
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    4 DRKGKGEKEPPVEVLDLPAVLSPGATPLDARLAVVHALMSASEGGQGGGIGGGFRFWEHLCLLSALQAVCEEWTGLKK 237
            DRKG  +K   +EVL+LP VL+PGATPLDARLAVVH LM   E G GGGIG GFRF EHLCLLSALQAVCEEW GL++
Sbjct: 1358 DRKGMDKKGKALEVLELPGVLAPGATPLDARLAVVHGLM---EKGGGGGIGAGFRFGEHLCLLSALQAVCEEWLGLRR 1432
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig918.18202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE8.580e-2773.08HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig918contigL-elsbetiae_contig918:3821..4562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.5639389-CDS-L-elsbetiae_contig918:3820..39711622816991.5639389-CDS-L-elsbetiae_contig918:3820..3971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 3821..3971 -
1691683966.484038-CDS-L-elsbetiae_contig918:3820..39711691683966.484038-CDS-L-elsbetiae_contig918:3820..3971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 3821..3971 -
1622816991.574847-CDS-L-elsbetiae_contig918:4467..45621622816991.574847-CDS-L-elsbetiae_contig918:4467..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 4468..4562 -
1691683966.4989736-CDS-L-elsbetiae_contig918:4467..45621691683966.4989736-CDS-L-elsbetiae_contig918:4467..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig918 4468..4562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig918.18202.1prot_L-elsbetiae_contig918.18202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig918 3821..4562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig918.18202.1

>prot_L-elsbetiae_contig918.18202.1 ID=prot_L-elsbetiae_contig918.18202.1|Name=mRNA_L-elsbetiae_contig918.18202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
LDRKGKGEKEPPVEVLDLPAVLSPGATPLDARLAVVHALMSASEGGQGGG
IGGGFRFWEHLCLLSALQAVCEEWTGLKKKR*
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mRNA from alignment at L-elsbetiae_contig918:3821..4562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig918.18202.1 ID=mRNA_L-elsbetiae_contig918.18202.1|Name=mRNA_L-elsbetiae_contig918.18202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=742bp|location=Sequence derived from alignment at L-elsbetiae_contig918:3821..4562- (Laminarionema elsbetiae ELsaHSoW15)
CTGGACAGGAAGGGCAAGGGCGAGAAGGAGCCGCCGGTGGAGGTGTTGGA
CCTGCCGGCCGTGCTCAGCCCTGGGGCCACACCGCTTGATGCCAGGTGCG
CGGGGGGGGGGGGGTACTGGTTGTAGTGATGGGGGCACCACATGTAGTGA
AAGCACACATACGAGGTGTTCATGAAGTGTATTAACGTGGTACCACCCTG
GTTCAGGTATATTTTTCTATTTTGACCTGTTTCTTTCTTGTCTTCATCTG
CCGTTCCCCACGAACAACAGATGGCGTTGTTGCTGTGCCCCCGAACGCCT
TTTTTTTTTTTTTTTCTCATCACATTAATTTCCAGTGCTCGATGGGCTCC
CTGTCACGAGGAGGTCTTGCCTGAGTACTGAACCGTGGTCACACAGAAGG
GTTCCTTTCCCCAAGGCCGGCCCTCACTCCCCCCGTCTGCGGTGCTCGCC
TGAGATTTTTGTCGCGAGAAGGGTCCAGCCGTGTCCCTTTCCCTCGTCGA
CGGTGAGGTCGAAAATATGAAAATACCAAATATATACCGTATGTACTGCC
TGTCACCCACCGCGTGGCCCAAAATCGCTGAACGAACGCAGGCTCGCCGT
GGTGCACGCGCTCATGTCGGCGTCGGAGGGGGGGCAAGGCGGAGGGATCG
GCGGCGGGTTCCGGTTCTGGGAGCACTTGTGCCTCTTGAGCGCCCTCCAG
GCCGTTTGCGAGGAGTGGACCGGTCTCAAAAAGAAGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig918:3821..4562-

>mRNA_L-elsbetiae_contig918.18202.1 ID=mRNA_L-elsbetiae_contig918.18202.1|Name=mRNA_L-elsbetiae_contig918.18202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig918:3821..4562- (Laminarionema elsbetiae ELsaHSoW15)
CTGGACAGGAAGGGCAAGGGCGAGAAGGAGCCGCCGGTGGAGGTGTTGGA
CCTGCCGGCCGTGCTCAGCCCTGGGGCCACACCGCTTGATGCCAGCTGGA
CAGGAAGGGCAAGGGCGAGAAGGAGCCGCCGGTGGAGGTGTTGGACCTGC
CGGCCGTGCTCAGCCCTGGGGCCACACCGCTTGATGCCAGGCTCGCCGTG
GTGCACGCGCTCATGTCGGCGTCGGAGGGGGGGCAAGGCGGAGGGATCGG
CGGCGGGTTCCGGTTCTGGGAGCACTTGTGCCTCTTGAGCGCCCTCCAGG
CCGTTTGCGAGGAGTGGACCGGTCTCAAAAAGAAGAGGTGAGCTCGCCGT
GGTGCACGCGCTCATGTCGGCGTCGGAGGGGGGGCAAGGCGGAGGGATCG
GCGGCGGGTTCCGGTTCTGGGAGCACTTGTGCCTCTTGAGCGCCCTCCAG
GCCGTTTGCGAGGAGTGGACCGGTCTCAAAAAGAAGAGGTGA
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