mRNA_L-elsbetiae_contig9179.18201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9179.18201.1
Unique NamemRNA_L-elsbetiae_contig9179.18201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9179.18201.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 6.390e-68
Identity = 161/275 (58.55%), Postives = 190/275 (69.09%), Query Frame = 1 
Query:  331 EDPTATAYLRAFQAAVASHVRAMCEIPDPRELQEEDTIYEELLQSGVEAQAALARLAATRARIACLSVDTCRDALRVSEAADDRACSVLEARTKHARREKEIGGPLPL----------ISAANGDSGAGXXXXXXDGIGDAVAFSGIDPSDLEPRVTRLIAEMSELPGPLKTWLQELPEHTAALAASVQNAELVMEKRDSRTEALLGKAPPTPLPSKKSRAAGAXXXXXXXGAAGEAGDEQRPEDVRSAAREARVEQARKEWEAGGVGMAASVFN 1125
            +D   TAYLRAFQAAVA  VR +CE+ D RE +EED +  E+ Q   + +AA +RL ATRAR+A LS DTCRDALRVSEAADDRAC+VLEA T HARRE E GGPLPL                     XXXXXX GI     F G++   +EP+V+ LI +M+ELPGPLK+ LQE+PE TA+LA SVQ AE  ++   SRTEALLGKAPPTPL SKK +  GAXXXXXXX A     +   PED R+AAREARV+QARKEWEA GVG+   +FN
Sbjct:   35 QDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGI-----FQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGK--GAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9179.18201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI6.390e-6858.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9179contigL-elsbetiae_contig9179:1978..4641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Exons1
Model size2664
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9179.18201.1prot_L-elsbetiae_contig9179.18201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9179 2014..3105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.5054412-UTR-L-elsbetiae_contig9179:1977..20131622816991.5054412-UTR-L-elsbetiae_contig9179:1977..2013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9179 1978..2013 +
1691683966.453063-UTR-L-elsbetiae_contig9179:1977..20131691683966.453063-UTR-L-elsbetiae_contig9179:1977..2013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9179 1978..2013 +
1622816991.5288618-UTR-L-elsbetiae_contig9179:3105..46411622816991.5288618-UTR-L-elsbetiae_contig9179:3105..4641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9179 3106..4641 +
1691683966.473686-UTR-L-elsbetiae_contig9179:3105..46411691683966.473686-UTR-L-elsbetiae_contig9179:3105..4641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9179 3106..4641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.5189106-CDS-L-elsbetiae_contig9179:2013..31051622816991.5189106-CDS-L-elsbetiae_contig9179:2013..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9179 2014..3105 +
1691683966.4636338-CDS-L-elsbetiae_contig9179:2013..31051691683966.4636338-CDS-L-elsbetiae_contig9179:2013..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9179 2014..3105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9179.18201.1

>prot_L-elsbetiae_contig9179.18201.1 ID=prot_L-elsbetiae_contig9179.18201.1|Name=mRNA_L-elsbetiae_contig9179.18201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=364bp
MSSSRKRKAPDAAPATAQASTNSSAAAGPRKEQPLVRATPDLLKEMRRRV
RTVVDETTAKKLAEKASSTVPGAAESRSKSSSGGGGAAAAAVVPPAADED
PTATAYLRAFQAAVASHVRAMCEIPDPRELQEEDTIYEELLQSGVEAQAA
LARLAATRARIACLSVDTCRDALRVSEAADDRACSVLEARTKHARREKEI
GGPLPLISAANGDSGAGGGDGDDDGIGDAVAFSGIDPSDLEPRVTRLIAE
MSELPGPLKTWLQELPEHTAALAASVQNAELVMEKRDSRTEALLGKAPPT
PLPSKKSRAAGAGAGAGAGGAAGEAGDEQRPEDVRSAAREARVEQARKEW
EAGGVGMAASVFN*
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mRNA from alignment at L-elsbetiae_contig9179:1978..4641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9179.18201.1 ID=mRNA_L-elsbetiae_contig9179.18201.1|Name=mRNA_L-elsbetiae_contig9179.18201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2664bp|location=Sequence derived from alignment at L-elsbetiae_contig9179:1978..4641+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGACGGCATCGAGGCCGCGCACACACGACTGGCTATGTCGTCCTCGAG
GAAAAGGAAAGCTCCCGACGCTGCTCCTGCTACGGCGCAAGCCTCGACCA
ACAGCAGCGCGGCTGCTGGTCCCCGGAAGGAGCAGCCGTTGGTCCGAGCT
ACCCCCGATCTTCTGAAGGAGATGCGGCGCCGGGTCAGGACGGTTGTCGA
CGAGACGACGGCGAAGAAGCTAGCAGAGAAGGCCAGTTCTACCGTACCGG
GAGCGGCAGAGAGCAGGAGTAAAAGCAGCAGCGGCGGCGGAGGTGCAGCA
GCCGCGGCAGTAGTGCCCCCAGCAGCAGACGAAGACCCGACGGCAACGGC
GTACCTTCGAGCGTTCCAAGCCGCGGTTGCCAGCCACGTGCGGGCCATGT
GCGAGATTCCGGACCCGCGCGAGCTGCAGGAGGAGGATACTATTTACGAA
GAGTTACTCCAGTCTGGCGTCGAGGCTCAGGCCGCGTTGGCCAGGCTGGC
GGCCACCCGCGCGCGCATCGCCTGCCTCTCGGTCGACACATGCAGAGACG
CCCTCCGGGTGTCGGAGGCCGCCGACGACCGCGCCTGCTCCGTCCTAGAG
GCCAGAACAAAGCACGCGCGGAGGGAGAAGGAGATCGGGGGTCCCCTACC
GCTGATTTCGGCGGCGAACGGTGACAGCGGCGCCGGCGGCGGCGACGGCG
ACGACGACGGCATCGGTGACGCGGTGGCTTTCTCGGGCATCGACCCCAGC
GATCTGGAGCCCAGGGTGACCAGGCTGATCGCGGAGATGTCGGAGCTCCC
CGGCCCGCTCAAGACCTGGCTGCAGGAGCTGCCCGAGCATACGGCCGCGC
TCGCGGCCTCGGTGCAGAACGCGGAGTTAGTCATGGAGAAAAGGGACAGC
CGGACGGAAGCCCTCTTGGGCAAGGCGCCGCCGACGCCGCTGCCCAGTAA
GAAGAGCAGAGCGGCGGGGGCGGGGGCCGGGGCGGGGGCTGGCGGAGCGG
CGGGTGAGGCGGGTGACGAGCAGCGACCCGAGGACGTGCGGTCGGCAGCG
AGGGAGGCAAGGGTGGAGCAGGCGAGGAAGGAGTGGGAGGCGGGGGGAGT
TGGCATGGCCGCTAGCGTCTTCAACTGACATTCAACTGATTGAAGAGTGT
TGGCTTTTGCCTCATCTGGGGAAGGTCTGGATTTGCTGAGTATTTATCGG
TGGGTCGGGCGTGTACGCCCTCGCGCAGAAACCGGCGAAATCTTTGTATT
ATCTATTAACTCGCTGGGATTATTTAGCCTTATCCTTGTGCCGTATTTGC
TTGACGTTTTGTTTTTTTAGTTGCTTGAAATGCAGTTGGCCTGCCCGCCC
AAGGTGATGTTGGTTGATATGTAGGGTGTGGTACTCGTTTCGTGTAGGGG
ACGGGAAGCATGTCCCGTTTCATGCCCTTTCAAGCCGTCGCGGGAAGGGA
AGTTGTTAGTATGAGCGTTGGAAGGCCTCATGAGTCAGGCCCCGTCGTCC
TCCAACCTCCAAGCGCTCAGCCAACCCCCTAGTGCATTGGCCGCTGTACC
TGGTGTACCTGGTGCCGTTATAATACCTTTGAAAGCCGCCACGTGCTGCG
TGTTGCGCAGATACAGTAGGGTCAGTCTCGGCCGCCTTGCCGTGCGTCTG
TTTTTGTGCTATGTGCCGGCGCAAATTGGGGGTTTGACATACAGCAGTAC
GAGAAGGAGAGTTCCAACACCACCGTGCAGCTGCGGTGGCGGTCGAATTG
CTCCTTGCGGGTGTTTAGGGTACACACAATGGCAGCTGTGCGGGCGCGGG
TGTTTTCCTCTTCATCTGCTCATTTTTTTTGTTCCGAGAATGCTGCCATA
GCATAGGCCATCCAGCAGGAGCCACACGGGAAGCAGTCATGATGAACATG
GCCAGGTGTAGATGGTCGAGCTCTGCCGGCTGGCCGGTTTGGGTAAGAGC
TATGTATGCTGGCACCAATTTGTCACCACCCGTCCATAAAAAGGGTACCG
ACCGTAGTGCGGAGCCATCATGGTTCTTGGGTATGTGCGTCGGCGTGTCT
CGAAGCGTTGGCTGTACGCGTTTGTTGCCACCCTCTGCTACTGCTTTTCT
GCCACACCTTCCTTCCCTTGGTTGCGGCGGCTGGTACCGCTGGAAGCCGT
TTACAATCGACCTGTAACCCTGAATCAGTTCGTTATATTGGTTCTGCACG
GGATCAAGTTTTTATGTAGTCCCAGCTGGTGCAATCAAAAGAAGGCGTGG
TGGGCATTTAGTTTTGGACCTTAAAAGGTTAAGTTGTGGGGGGCACCGAA
GGGTTCGGGCCGTCGTGTAGCTGTTGTGCCGGTGTAGGGTAGAATATTGT
TCAGGTATGTAGGATGCATATAGCACGTTTTTTATTTTTATTCGAAGGGT
GACTGCTAAGTTGGGAGTGTTGTAAATGAAATGAGGGTCCATTTGTGCTG
TGTACTGCCGTACAATGTCGATTGGTTTAGAGAGGGAGGACGGTGCTGCT
ACTACTAACTGAGCTGTAAAATATGTTTTGTCCGTCGCAGCAATATTTAT
TGTAGAGGGTCTACACATCCAGTTCATGAGGTTTTCGTCTCGCCGGGGTT
GCCGTATTTTGTTCTCCACTTTGGGCCCGGAGCGGCGTGCTCATTGTGTT
TGGTCACAGGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9179:1978..4641+

>mRNA_L-elsbetiae_contig9179.18201.1 ID=mRNA_L-elsbetiae_contig9179.18201.1|Name=mRNA_L-elsbetiae_contig9179.18201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2184bp|location=Sequence derived from alignment at L-elsbetiae_contig9179:1978..4641+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCCTCGAGGAAAAGGAAAGCTCCCGACGCTGCTCCTGCTACGGC
GCAAGCCTCGACCAACAGCAGCGCGGCTGCTGGTCCCCGGAAGGAGCAGC
CGTTGGTCCGAGCTACCCCCGATCTTCTGAAGGAGATGCGGCGCCGGGTC
AGGACGGTTGTCGACGAGACGACGGCGAAGAAGCTAGCAGAGAAGGCCAG
TTCTACCGTACCGGGAGCGGCAGAGAGCAGGAGTAAAAGCAGCAGCGGCG
GCGGAGGTGCAGCAGCCGCGGCAGTAGTGCCCCCAGCAGCAGACGAAGAC
CCGACGGCAACGGCGTACCTTCGAGCGTTCCAAGCCGCGGTTGCCAGCCA
CGTGCGGGCCATGTGCGAGATTCCGGACCCGCGCGAGCTGCAGGAGGAGG
ATACTATTTACGAAGAGTTACTCCAGTCTGGCGTCGAGGCTCAGGCCGCG
TTGGCCAGGCTGGCGGCCACCCGCGCGCGCATCGCCTGCCTCTCGGTCGA
CACATGCAGAGACGCCCTCCGGGTGTCGGAGGCCGCCGACGACCGCGCCT
GCTCCGTCCTAGAGGCCAGAACAAAGCACGCGCGGAGGGAGAAGGAGATC
GGGGGTCCCCTACCGCTGATTTCGGCGGCGAACGGTGACAGCGGCGCCGG
CGGCGGCGACGGCGACGACGACGGCATCGGTGACGCGGTGGCTTTCTCGG
GCATCGACCCCAGCGATCTGGAGCCCAGGGTGACCAGGCTGATCGCGGAG
ATGTCGGAGCTCCCCGGCCCGCTCAAGACCTGGCTGCAGGAGCTGCCCGA
GCATACGGCCGCGCTCGCGGCCTCGGTGCAGAACGCGGAGTTAGTCATGG
AGAAAAGGGACAGCCGGACGGAAGCCCTCTTGGGCAAGGCGCCGCCGACG
CCGCTGCCCAGTAAGAAGAGCAGAGCGGCGGGGGCGGGGGCCGGGGCGGG
GGCTGGCGGAGCGGCGGGTGAGGCGGGTGACGAGCAGCGACCCGAGGACG
TGCGGTCGGCAGCGAGGGAGGCAAGGGTGGAGCAGGCGAGGAAGGAGTGG
GAGGCGGGGGGAGTTGGCATGGCCGCTAGCGTCTTCAACTGAATGTCGTC
CTCGAGGAAAAGGAAAGCTCCCGACGCTGCTCCTGCTACGGCGCAAGCCT
CGACCAACAGCAGCGCGGCTGCTGGTCCCCGGAAGGAGCAGCCGTTGGTC
CGAGCTACCCCCGATCTTCTGAAGGAGATGCGGCGCCGGGTCAGGACGGT
TGTCGACGAGACGACGGCGAAGAAGCTAGCAGAGAAGGCCAGTTCTACCG
TACCGGGAGCGGCAGAGAGCAGGAGTAAAAGCAGCAGCGGCGGCGGAGGT
GCAGCAGCCGCGGCAGTAGTGCCCCCAGCAGCAGACGAAGACCCGACGGC
AACGGCGTACCTTCGAGCGTTCCAAGCCGCGGTTGCCAGCCACGTGCGGG
CCATGTGCGAGATTCCGGACCCGCGCGAGCTGCAGGAGGAGGATACTATT
TACGAAGAGTTACTCCAGTCTGGCGTCGAGGCTCAGGCCGCGTTGGCCAG
GCTGGCGGCCACCCGCGCGCGCATCGCCTGCCTCTCGGTCGACACATGCA
GAGACGCCCTCCGGGTGTCGGAGGCCGCCGACGACCGCGCCTGCTCCGTC
CTAGAGGCCAGAACAAAGCACGCGCGGAGGGAGAAGGAGATCGGGGGTCC
CCTACCGCTGATTTCGGCGGCGAACGGTGACAGCGGCGCCGGCGGCGGCG
ACGGCGACGACGACGGCATCGGTGACGCGGTGGCTTTCTCGGGCATCGAC
CCCAGCGATCTGGAGCCCAGGGTGACCAGGCTGATCGCGGAGATGTCGGA
GCTCCCCGGCCCGCTCAAGACCTGGCTGCAGGAGCTGCCCGAGCATACGG
CCGCGCTCGCGGCCTCGGTGCAGAACGCGGAGTTAGTCATGGAGAAAAGG
GACAGCCGGACGGAAGCCCTCTTGGGCAAGGCGCCGCCGACGCCGCTGCC
CAGTAAGAAGAGCAGAGCGGCGGGGGCGGGGGCCGGGGCGGGGGCTGGCG
GAGCGGCGGGTGAGGCGGGTGACGAGCAGCGACCCGAGGACGTGCGGTCG
GCAGCGAGGGAGGCAAGGGTGGAGCAGGCGAGGAAGGAGTGGGAGGCGGG
GGGAGTTGGCATGGCCGCTAGCGTCTTCAACTGA
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