mRNA_L-elsbetiae_contig9176.18198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9176.18198.1
Unique NamemRNA_L-elsbetiae_contig9176.18198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9176.18198.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 9.350e-29
Identity = 103/187 (55.08%), Postives = 116/187 (62.03%), Query Frame = 3 
Query:   30 TSRSQLRQQSGVTPLSSSERP-RETKKGINSTKIAPAPASYRSGDKTTAARIAMNAIQAGNKTSARSAGTAASLSSSRDAQGLHGGSDSGRGPLSARTTSRSHASSA-VSPTDYSTDTPRGTARTTTTMAMSTARAEATLAILEAERAQLERRLKKVEDELRQEETLAMTEHRKRGAGGGVPRREVR 584
            +SR +  QQ   TP  S ER  R  K+G        APAS+RSG           A       SARSAGTAAS SSS+  +GL   +  G G  S RTTSRS  SSA +S TDY+TDTPR T RTTTTMAMSTARAEATLA+LEAERAQLE RLKKVEDELRQE  L+   ++KRG     P R  R
Sbjct:   17 SSRCRHHQQCKGTPRRSLERSNRRPKEGEEIPATIAAPASHRSGGGGDGTN--RTARHEEPTASARSAGTAASFSSSKGGRGLPS-AYCGSGVPSGRTTSRSLTSSAAISLTDYATDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9176.18198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMP4_ECTSI9.350e-2955.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9176contigL-elsbetiae_contig9176:6129..7574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size782
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9176.18198.1prot_L-elsbetiae_contig9176.18198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9176 6324..7389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.2207248-UTR-L-elsbetiae_contig9176:6128..63231622816991.2207248-UTR-L-elsbetiae_contig9176:6128..6323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9176 6129..6323 -
1691683966.283221-UTR-L-elsbetiae_contig9176:6128..63231691683966.283221-UTR-L-elsbetiae_contig9176:6128..6323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9176 6129..6323 -
1622816991.308179-UTR-L-elsbetiae_contig9176:7389..75741622816991.308179-UTR-L-elsbetiae_contig9176:7389..7574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9176 7390..7574 -
1691683966.3268213-UTR-L-elsbetiae_contig9176:7389..75741691683966.3268213-UTR-L-elsbetiae_contig9176:7389..7574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9176 7390..7574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.231955-CDS-L-elsbetiae_contig9176:6323..64191622816991.231955-CDS-L-elsbetiae_contig9176:6323..6419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 6324..6419 -
1691683966.294102-CDS-L-elsbetiae_contig9176:6323..64191691683966.294102-CDS-L-elsbetiae_contig9176:6323..6419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 6324..6419 -
1622816991.2838476-CDS-L-elsbetiae_contig9176:6766..68751622816991.2838476-CDS-L-elsbetiae_contig9176:6766..6875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 6767..6875 -
1691683966.3044145-CDS-L-elsbetiae_contig9176:6766..68751691683966.3044145-CDS-L-elsbetiae_contig9176:6766..6875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 6767..6875 -
1622816991.2963338-CDS-L-elsbetiae_contig9176:7192..73891622816991.2963338-CDS-L-elsbetiae_contig9176:7192..7389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 7193..7389 -
1691683966.314801-CDS-L-elsbetiae_contig9176:7192..73891691683966.314801-CDS-L-elsbetiae_contig9176:7192..7389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 7193..7389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9176.18198.1

>prot_L-elsbetiae_contig9176.18198.1 ID=prot_L-elsbetiae_contig9176.18198.1|Name=mRNA_L-elsbetiae_contig9176.18198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MNAIQAGNKTSARSAGTAASLSSSRDAQGLHGGSDSGRGPLSARTTSRSH
ASSAVSPTDYSTDTPRGTARTTTTMAMSTARAEATLAILEAERAQLERRL
KKVEDELRQEETLAMTEHRKRGAGGGVPRREVR*
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mRNA from alignment at L-elsbetiae_contig9176:6129..7574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9176.18198.1 ID=mRNA_L-elsbetiae_contig9176.18198.1|Name=mRNA_L-elsbetiae_contig9176.18198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:6129..7574- (Laminarionema elsbetiae ELsaHSoW15)
CCAGGGTAAATAAGAAGCGGAATCCTTCCACATCGCGGTCTCAGCTTCGG
CAGCAATCTGGCGTGACCCCACTCTCGTCTTCAGAACGACCACGCGAAAC
AAAAAAGGGAATCAACTCGACAAAAATTGCTCCTGCTCCGGCGTCGTATA
GAAGCGGCGATAAAACAACTGCCGCTAGGATCGCCATGAATGCCATCCAG
GCCGGGAATAAGACGAGCGCAAGATCTGCCGGGACTGCGGCTTCTTTATC
TTCTTCCAGAGATGCGCAAGGGCTACATGGCGGGTCGGACTCTGGAAGAG
GTCCACTTTCGGCTAGAACGACGTCGCGATCGCATGCAAGTAGCGCGGTT
AGCCCCACGGACTACTCTACGGACACCCCGAGGTGATGGGTTGACGGGGT
CGTGCCACACTTGAATTAACTGCAGACCACATGGATATCATATCGCAAGT
CAGTGGGTCTATTCCGTAGATACAAAGGCCCTGGTATAGATACGGAGTGT
TGCTTTCTGCAGAAGGTCGACAGCACTGTAGGCGCTCGCGGGCGGCATTG
CGGTGCAGCTCCATCGAACTCGGAAGCAAAAAAGGTACTATTTCTTACTT
TCGGTCAGCTCAGTATCATCTATGCTACAACGGCCTGAAGATTTGTGCTG
CCAAGCTTTCACTAAGCCATGATATTTCGTGCTTGTTTTTTTTTTTAAGG
GGGACCGCCCGTACGACCACGACAATGGCAATGAGCACGGCGCGGGCAGA
GGCCACCTTAGCGATTTTGGAGGCGGAAAGGGCTCAATTAGAACGCCGTC
TAAAGAAGGTGGGATGTCCCATTGAAGAGACGTTGTCGTTGTTCTTGTAC
TTCTTCGTCCCCTTTTCAGGTGGAAAACTGCCTTCCTCTCTGACTATATC
TATGCAGAGAGAGGTGGACACCTAGATCTACTATCTATCTATATGTCAGC
AGGGCGTTGAACTATCAATTTATGGTTTCTCACGGCTCGGCTCCTGCCAT
TCACTCTCTCTCTCTCTCTCTCTTGATTGATTGCCCCTGTCTGGACGCTT
CAGAAATGTGGATTTCGCATACATGTATGTACGACGGTTTACATAGTTCT
GCATGCTTCTTACGGTAGCCCTTGCCGCCCTGCCCCTTCGTGTGCACATG
TCAAGGTGGAAGACGAACTGAGACAAGAGGAAACCTTGGCGATGACCGAA
CACCGAAAGCGTGGCGCGGGCGGTGGCGTGCCCCGACGAGAGGTCCGATG
AACAAAAACTCATGTAAAAACGTAAAAGCGGCATTATCTACACAACCTTT
TCCTAGCGTATGTGTAAAGCCAAACAACGGCTGGCTTCAGCCTGAGCGGG
GCGGGGGCCTCTGCGCGAATGGTCCTGTTTGCGGACGTTGCTCTTTGGTG
GACAAACTGAAGGCTTCTCGAACGTTGGATGCGTTCAGCCGCTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9176:6129..7574-

>mRNA_L-elsbetiae_contig9176.18198.1 ID=mRNA_L-elsbetiae_contig9176.18198.1|Name=mRNA_L-elsbetiae_contig9176.18198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:6129..7574- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGCCATCCAGGCCGGGAATAAGACGAGCGCAAGATCTGCCGGGAC
TGCGGCTTCTTTATCTTCTTCCAGAGATGCGCAAGGGCTACATGGCGGGT
CGGACTCTGGAAGAGGTCCACTTTCGGCTAGAACGACGTCGCGATCGCAT
GCAAGTAGCGCGGTTAGCCCCACGGACTACTCTACGGACACCCCGAGATG
AATGCCATCCAGGCCGGGAATAAGACGAGCGCAAGATCTGCCGGGACTGC
GGCTTCTTTATCTTCTTCCAGAGATGCGCAAGGGCTACATGGCGGGTCGG
ACTCTGGAAGAGGTCCACTTTCGGCTAGAACGACGTCGCGATCGCATGCA
AGTAGCGCGGTTAGCCCCACGGACTACTCTACGGACACCCCGAGGGGGAC
CGCCCGTACGACCACGACAATGGCAATGAGCACGGCGCGGGCAGAGGCCA
CCTTAGCGATTTTGGAGGCGGAAAGGGCTCAATTAGAACGCCGTCTAAAG
AAGGGGGACCGCCCGTACGACCACGACAATGGCAATGAGCACGGCGCGGG
CAGAGGCCACCTTAGCGATTTTGGAGGCGGAAAGGGCTCAATTAGAACGC
CGTCTAAAGAAGGTGGAAGACGAACTGAGACAAGAGGAAACCTTGGCGAT
GACCGAACACCGAAAGCGTGGCGCGGGCGGTGGCGTGCCCCGACGAGAGG
TCCGATGAGTGGAAGACGAACTGAGACAAGAGGAAACCTTGGCGATGACC
GAACACCGAAAGCGTGGCGCGGGCGGTGGCGTGCCCCGACGAGAGGTCCG
ATGA
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