mRNA_L-elsbetiae_contig9176.18197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE) HSP 1 Score: 178 bits (452), Expect = 4.230e-56 Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 2 Query: 2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 QF+S+ENIAHN+KVLEYCRTSLCAVGG+VSGILGLTGLVGLFSYL+LY+VVSLSLV KMGT DVSLYT GKGKLAMFAF GVGNYALTYILFWTLAYTLVYI Sbjct: 25 QFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYI 126
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 6.230e-24 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 2 Query: 5 FFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGK--GKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 F + +N+ HN K++ CRTSLCAV G+ +GILG TG +GL YL+ Y VSL+L+AKMG D S YT K +A F EG+ ++T+ILFWTLAY LVY+ Sbjct: 18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMG-FDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYV 119
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A1V9Z814_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z814_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.090e-17 Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 2 Query: 2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 +FFS EN+A N V+E+ T++ V G ++G++GLTG+ G +VLY++ S +L+AKMG +DV+ Y +A F F G+G + +++ILFWTLAY LV+I Sbjct: 9 EFFSMENMAKNEGVVEFTHTAMSVVSGSLAGVMGLTGVQGFVCMVVLYLLTSGALLAKMG-LDVAPYF--NMNVASFLFHGIGGHLVSFILFWTLAYGLVHI 107
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6G0WPJ7_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPJ7_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.960e-15 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 +FFS ENI N V+E+ +T++C V G ++G++GLT G +VLY+V S +L+AKM DV Y K F F G+G + +++ILFWTL Y +V+I Sbjct: 12 EFFSVENIQKNESVVEFTQTAMCVVTGSMAGVVGLTAFQGFVFMVVLYLVTSTALLAKM-RFDVETYF--NMKWYSFLFYGIGGHFVSFILFWTLGYGMVHI 110
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA) HSP 1 Score: 68.9 bits (167), Expect = 8.190e-13 Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 2 Query: 8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 +S EN+ N +++ Y RT L VGGV++G+LGLTG+ G Y ++ ++ S+ + AK DV Y ++ F+G+G L++ILFWT AY +V+I Sbjct: 32 YSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAK-AKFDVHSYFDSWNRIL---FDGIGQGLLSFILFWTFAYDIVHI 127
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI) HSP 1 Score: 67.8 bits (164), Expect = 2.010e-12 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 2 Query: 8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 FS EN+ +N KV Y RT L +GGVV+GILGLTGL G Y ++ V SL ++ K D+ Y ++ + +G+ ++++LFWT AY +V+I Sbjct: 26 FSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITK-AKFDIHEYFDSWNRVIL---DGITGGLMSFVLFWTFAYDIVHI 121
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: UPI00125E678C (ER membrane protein complex subunit 6 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E678C) HSP 1 Score: 67.4 bits (163), Expect = 2.710e-12 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 2 Query: 8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 FS EN+ +N KV+ Y RT + +GGV++GILGLTGL+G Y ++ + S L+AK V Y ++ + F G L+++LFWTLAY +V+I Sbjct: 24 FSAENMQNNMKVIYYSRTFMSIIGGVIAGILGLTGLMGFIFYFLIMGITSAGLIAK-AKFSVFSYFDNWNRIILDGFLGG---LLSFVLFWTLAYDIVHI 119
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR) HSP 1 Score: 65.9 bits (159), Expect = 1.080e-11 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 2 Query: 8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 F EN+ +N KV+ Y RT + +GGVV+GILGLTGL+G Y ++ + S+ L AK G + Y K+ + F G ++++LFWT AY +V+I Sbjct: 24 FHAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAG-FSIHSYFDSWNKILLDGFFGG---LMSFVLFWTFAYDIVHI 119
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A0D6R5G7_ARACU (ER membrane protein complex subunit 6 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R5G7_ARACU) HSP 1 Score: 65.9 bits (159), Expect = 1.110e-11 Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 11 STENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 S EN+ +N +V+ Y RT L +GGVV+GILGLTG G Y V+ + SL ++AK D+ Y ++ + +G+ ++++LFWT AY +V+I Sbjct: 26 SPENLQNNMRVIYYSRTFLSIIGGVVAGILGLTGWKGFIFYFVMMALTSLGVIAK-AKFDIHEYFDSWNRVIL---DGISGGLMSFVLFWTFAYDIVHI 120
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A0K9RLR8_SPIOL (ER membrane protein complex subunit 6 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RLR8_SPIOL) HSP 1 Score: 65.5 bits (158), Expect = 1.390e-11 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 5 FFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307 F + EN+ +N KV+ Y RT + VGG+++GILG TGL G Y V+ V S+ L AK + Y G ++ + +G ++++LFWT AY +V+I Sbjct: 19 FINAENMQNNMKVINYSRTLMSIVGGIIAGILGFTGLTGFIFYFVVMAVTSVGLAAK-AKFSIHSYFEGWNRVLL---DGFLAGLMSFVLFWTFAYDIVHI 115 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9176.18197.1 >prot_L-elsbetiae_contig9176.18197.1 ID=prot_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp TVLLDREHRPQQKGAGVLPNITVRRRGGSIRNPGADWSGRAVLVPRPLRCback to top mRNA from alignment at L-elsbetiae_contig9176:3143..5591+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9176.18197.1 ID=mRNA_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2449bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:3143..5591+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9176:3143..5591+ >mRNA_L-elsbetiae_contig9176.18197.1 ID=mRNA_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:3143..5591+ (Laminarionema elsbetiae ELsaHSoW15)back to top |