mRNA_L-elsbetiae_contig9176.18197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9176.18197.1
Unique NamemRNA_L-elsbetiae_contig9176.18197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.230e-56
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 2
Query:    2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            QF+S+ENIAHN+KVLEYCRTSLCAVGG+VSGILGLTGLVGLFSYL+LY+VVSLSLV KMGT DVSLYT GKGKLAMFAF GVGNYALTYILFWTLAYTLVYI
Sbjct:   25 QFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYI 126          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.230e-24
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 2
Query:    5 FFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGK--GKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            F + +N+ HN K++  CRTSLCAV G+ +GILG TG +GL  YL+ Y  VSL+L+AKMG  D S YT  K    +A F  EG+   ++T+ILFWTLAY LVY+
Sbjct:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMG-FDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYV 119          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A1V9Z814_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z814_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.090e-17
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 2
Query:    2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            +FFS EN+A N  V+E+  T++  V G ++G++GLTG+ G    +VLY++ S +L+AKMG +DV+ Y      +A F F G+G + +++ILFWTLAY LV+I
Sbjct:    9 EFFSMENMAKNEGVVEFTHTAMSVVSGSLAGVMGLTGVQGFVCMVVLYLLTSGALLAKMG-LDVAPYF--NMNVASFLFHGIGGHLVSFILFWTLAYGLVHI 107          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6G0WPJ7_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPJ7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-15
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    2 QFFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            +FFS ENI  N  V+E+ +T++C V G ++G++GLT   G    +VLY+V S +L+AKM   DV  Y     K   F F G+G + +++ILFWTL Y +V+I
Sbjct:   12 EFFSVENIQKNESVVEFTQTAMCVVTGSMAGVVGLTAFQGFVFMVVLYLVTSTALLAKM-RFDVETYF--NMKWYSFLFYGIGGHFVSFILFWTLGYGMVHI 110          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA)

HSP 1 Score: 68.9 bits (167), Expect = 8.190e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:    8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            +S EN+  N +++ Y RT L  VGGV++G+LGLTG+ G   Y ++ ++ S+ + AK    DV  Y     ++    F+G+G   L++ILFWT AY +V+I
Sbjct:   32 YSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAK-AKFDVHSYFDSWNRIL---FDGIGQGLLSFILFWTFAYDIVHI 127          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.010e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            FS EN+ +N KV  Y RT L  +GGVV+GILGLTGL G   Y ++  V SL ++ K    D+  Y     ++ +   +G+    ++++LFWT AY +V+I
Sbjct:   26 FSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITK-AKFDIHEYFDSWNRVIL---DGITGGLMSFVLFWTFAYDIVHI 121          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: UPI00125E678C (ER membrane protein complex subunit 6 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E678C)

HSP 1 Score: 67.4 bits (163), Expect = 2.710e-12
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            FS EN+ +N KV+ Y RT +  +GGV++GILGLTGL+G   Y ++  + S  L+AK     V  Y     ++ +  F G     L+++LFWTLAY +V+I
Sbjct:   24 FSAENMQNNMKVIYYSRTFMSIIGGVIAGILGLTGLMGFIFYFLIMGITSAGLIAK-AKFSVFSYFDNWNRIILDGFLGG---LLSFVLFWTLAYDIVHI 119          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-11
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    8 FSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            F  EN+ +N KV+ Y RT +  +GGVV+GILGLTGL+G   Y ++  + S+ L AK G   +  Y     K+ +  F G     ++++LFWT AY +V+I
Sbjct:   24 FHAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAG-FSIHSYFDSWNKILLDGFFGG---LMSFVLFWTFAYDIVHI 119          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A0D6R5G7_ARACU (ER membrane protein complex subunit 6 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R5G7_ARACU)

HSP 1 Score: 65.9 bits (159), Expect = 1.110e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 2
Query:   11 STENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            S EN+ +N +V+ Y RT L  +GGVV+GILGLTG  G   Y V+  + SL ++AK    D+  Y     ++ +   +G+    ++++LFWT AY +V+I
Sbjct:   26 SPENLQNNMRVIYYSRTFLSIIGGVVAGILGLTGWKGFIFYFVMMALTSLGVIAK-AKFDIHEYFDSWNRVIL---DGISGGLMSFVLFWTFAYDIVHI 120          
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Match: A0A0K9RLR8_SPIOL (ER membrane protein complex subunit 6 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RLR8_SPIOL)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:    5 FFSTENIAHNRKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLVLYVVVSLSLVAKMGTMDVSLYTPGKGKLAMFAFEGVGNYALTYILFWTLAYTLVYI 307
            F + EN+ +N KV+ Y RT +  VGG+++GILG TGL G   Y V+  V S+ L AK     +  Y  G  ++ +   +G     ++++LFWT AY +V+I
Sbjct:   19 FINAENMQNNMKVINYSRTLMSIVGGIIAGILGFTGLTGFIFYFVVMAVTSVGLAAK-AKFSIHSYFEGWNRVLL---DGFLAGLMSFVLFWTFAYDIVHI 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9176.18197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZV5_9PHAE4.230e-5690.20ER membrane protein complex subunit 6 n=2 Tax=Ecto... [more]
A0A835YLI1_9STRA6.230e-2452.43ER membrane protein complex subunit 6 n=1 Tax=Trib... [more]
A0A1V9Z814_9STRA2.090e-1745.10ER membrane protein complex subunit 6 n=1 Tax=Achl... [more]
A0A6G0WPJ7_9STRA2.960e-1543.14ER membrane protein complex subunit 6 n=1 Tax=Apha... [more]
A0A2K1IUJ4_PHYPA8.190e-1339.00ER membrane protein complex subunit 6 n=1 Tax=Phys... [more]
A9P1K8_PICSI2.010e-1240.00ER membrane protein complex subunit 6 n=1 Tax=Pice... [more]
UPI00125E678C2.710e-1241.00ER membrane protein complex subunit 6 n=2 Tax=Ipom... [more]
A0A6P6SSX2_COFAR1.080e-1140.00ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A0A0D6R5G7_ARACU1.110e-1138.38ER membrane protein complex subunit 6 n=2 Tax=Arau... [more]
A0A0K9RLR8_SPIOL1.390e-1137.62ER membrane protein complex subunit 6 n=1 Tax=Spin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9176contigL-elsbetiae_contig9176:3143..5591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9176.18197.1prot_L-elsbetiae_contig9176.18197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9176 3143..5590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816991.166754-CDS-L-elsbetiae_contig9176:3142..32341622816991.166754-CDS-L-elsbetiae_contig9176:3142..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 3143..3234 +
1691683966.244242-CDS-L-elsbetiae_contig9176:3142..32341691683966.244242-CDS-L-elsbetiae_contig9176:3142..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 3143..3234 +
1622816991.1794028-CDS-L-elsbetiae_contig9176:4427..44871622816991.1794028-CDS-L-elsbetiae_contig9176:4427..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 4428..4487 +
1691683966.2565506-CDS-L-elsbetiae_contig9176:4427..44871691683966.2565506-CDS-L-elsbetiae_contig9176:4427..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 4428..4487 +
1622816991.1906023-CDS-L-elsbetiae_contig9176:5433..55901622816991.1906023-CDS-L-elsbetiae_contig9176:5433..5590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 5434..5590 +
1691683966.27257-CDS-L-elsbetiae_contig9176:5433..55901691683966.27257-CDS-L-elsbetiae_contig9176:5433..5590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9176 5434..5590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9176.18197.1

>prot_L-elsbetiae_contig9176.18197.1 ID=prot_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
TVLLDREHRPQQKGAGVLPNITVRRRGGSIRNPGADWSGRAVLVPRPLRC
RVFELGGENGHHGCVPVHARKGKAGDVRLRRGGKLRVDVHPILDTGLHIS
LHL
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mRNA from alignment at L-elsbetiae_contig9176:3143..5591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9176.18197.1 ID=mRNA_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2449bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:3143..5591+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGTTCTTCTCGACAGAGAACATCGCCCACAACAGAAAGGTGCTGGAGT ACTGCCGAACATCACTGTGCGCCGTCGGGGGGGTAGTATCCGGTAAGTTT TTGTTTGTTTGTGTTTGTTTTCTTCACAATTTATTTCCAGTGCTCAGTGG GCTCCTTGCCACGAGGGCATCTTGCCAGAGTACTGAACCGCGGTCACACA TAAGGGTTATTTTCCCCTCGAGGCCCCCACTCCCCCCTTCTGCGGTGCTT GCCTGAGTTTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTCCCTCGTCG ACGGTAAGTGCAATGCATTGTGTTTGTCATCTAAATTGAAGTAAAATAAT ATCGGTCCGCGGCAAACGCCGAAGGGGGGGGGGGGGGGTGCCGCGGATGA GACCGGGTGGACTGAGAGAGAGGTTTGGGAGGCTGCCATTACTGCTACTG TATCTAGATCAGCCACGCACGGGCCGTTATGCGTGCGTGTGACCAGCCCA CAACCTTTTATGTACGTGTTCCCTTTCCGTGAGAGGGGTGCCTGCTGCAT ATAAGAGCAAACACTGCTGCTGTTGAGGGGCCCGGTCTCTCGACCTCATT TTTTTGCACGGGTACCCTCTTGGAGCAACAGCAAGTAGTGGATGTTTGGC AGCTTTAGCTTTTACAGGCGCTACAAAAGACAGGCAGGGTTCTCTCGCGA CGCCGTCGCCTGCGGGGGGTTGCGTTCTGCCGTGGCTGTGCATATCACGT GGTGACGAAACTTGTGCGGGCGCGGCCGGAATCATCCCGGCGAGAACAAT TACGAAGAGCAAGCGTGACGCGAGCACTATTATTGTGTCATCCTCTTCCA GACGAAAGACAAGAAACGGCCCGACGCATGGGATTGAGAGGGAATCAAGG ATTCAAGTAGCAATCCGCGTTTTGTGAGAGCGGGAGAATAGCCCCAGCCA ATCAGGCTGCAGCTTGTCGAAGGGAGACGGCGTAAGTGTTGAGGTCACTC GTCGGTGAGCGAAACGAGCACGGGCTCGAGACGCTGGTGTTATCGCGCTG CAGCCTGTGGTGTGTCCTGTGGGTTTCTGCTCTCCCACCCACCCAACCAC CTATTATTATTGTGCCCATCCTTCATCCTTCCAGACGAAAGACAAGAAAC CGCCTGATTCTATTTTCTTGCGCTCCTCGCGGCGGAATTTTTGGCACGTA GGGGGATCGCTTATTTTCAACTTTGAATCCTGCCCACCCACCCACCCAAC CCCTTTTCTTTGTGTGTGTCAACAATTTGTTTCAGGAATCCTGGGGCTGA CTGGTCTGGTCGGGCTGTTCTCGTACCTCGTCCTTTACGTTGTCGGTAAG CGCAACAACCGAAATCTCAAAAATGAGTCTTCCTTCCTAGATACTACTGT ACACGGAAGTACACATATTGTAGCATTCAAGCGGTCTGTTTATTGGGTCC CATCTGATGCAGTGTGCCAGCTACATACATACGTGCATACCAATGCCGAC ACGTTTGTGTGTATGTTTTTTTTGTGCCGGGGGTGTTTTATGTATGGTCA CTACCGCTAAGCAGGCCGGGGGGGCTTAGTTGGGTTTTGCGTTCGACACG CTGGGTGAACGAATGTATTTTCCACGCGACAAAGTGCGTTTAGGCGCGAG AGCGGAGATTGTTTTATGATTTGATGAGAACGAGAGCGAACTTAGTTTGT ACAAGAGTCATACATACATACTTCGCAGTACATACAACTGCATACGACAC AAGATAACACACACCCTGGACCGACTTTTCAAATCTCGGTTACCCCGCAA CGAATGGTTTCTAGTACAAACGGCACGTTTTTGGACAGCTCTTGATGAGA TATTTCCAACGCCGCCCTTTCCGGGACTGGCACTCTTCTCGCTGTGGAGT ACTTGGGCTTTGAAAACCGGTCCAGGGGTGTGTTATCTTGTGTCGTATAC GGCTACGTACTCTGAACAATGCTGTGGTTTGCGTCGCAAAGAGGTGTCTC ATGTTCTTCCGTTTCCTTCGATGTGTGTTGTTTCGTGCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGGCCCCCC CCGCTGTTCGGCGTGCGGGGGGGGGGGGGGGGGCGGGGTGGATGGGTCTC NNNNNNNNNNAACAATGCTGTGGTTTGCGTCGCAAAGAGGTGTCTCATTT TCTTCCGTTTCCTTCGATGTGTGTTGTTTCGTGCCCCCCCCCCCCCCCGC CGCCGCCACGCGTGTCGACCCCGGGTGTGTGTTCCATAAAGTGTCTTTGA GCTTGGTGGCGAAAATGGGCACCATGGATGTGTCCCTGTACACGCCAGGA AAGGGAAAGCTGGCGATGTTCGCCTTCGAAGGGGTGGGAAACTACGCGTT GACGTACATCCTATTCTGGACACTGGCTTACACATTAGTCTACATCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9176:3143..5591+

>mRNA_L-elsbetiae_contig9176.18197.1 ID=mRNA_L-elsbetiae_contig9176.18197.1|Name=mRNA_L-elsbetiae_contig9176.18197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9176:3143..5591+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGTTCTTCTCGACAGAGAACATCGCCCACAACAGAAAGGTGCTGGAGT
ACTGCCGAACATCACTGTGCGCCGTCGGGGGGGTAGTATCCGACAGTTCT
TCTCGACAGAGAACATCGCCCACAACAGAAAGGTGCTGGAGTACTGCCGA
ACATCACTGTGCGCCGTCGGGGGGGTAGTATCCGGAATCCTGGGGCTGAC
TGGTCTGGTCGGGCTGTTCTCGTACCTCGTCCTTTACGTTGTCGGAATCC
TGGGGCTGACTGGTCTGGTCGGGCTGTTCTCGTACCTCGTCCTTTACGTT
GTCGTGTCTTTGAGCTTGGTGGCGAAAATGGGCACCATGGATGTGTCCCT
GTACACGCCAGGAAAGGGAAAGCTGGCGATGTTCGCCTTCGAAGGGGTGG
GAAACTACGCGTTGACGTACATCCTATTCTGGACACTGGCTTACACATTA
GTCTACATCTATGTCTTTGAGCTTGGTGGCGAAAATGGGCACCATGGATG
TGTCCCTGTACACGCCAGGAAAGGGAAAGCTGGCGATGTTCGCCTTCGAA
GGGGTGGGAAACTACGCGTTGACGTACATCCTATTCTGGACACTGGCTTA
CACATTAGTCTACATCTA
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