mRNA_L-elsbetiae_contig9174.18195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9174.18195.1
Unique NamemRNA_L-elsbetiae_contig9174.18195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9174.18195.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.450e-19
Identity = 84/183 (45.90%), Postives = 91/183 (49.73%), Query Frame = 3 
Query:    3 DFSPPKTFGPRGGMPPRAAAPHVVTGRRVIRRVSSSPR----ATAPRPRVSTSPRDIVAPSGIGAAHQTSVSV-TSPLDVERVAAPAAAPWRVSNASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQKRRLEQSEGSCFVPCARRRSS-EGRTGRSV-------EVGGEGHAQQARFRG 512
            DFSP  TF P G +  +A A H+V GRRV+RRVSSSPR    A A  P VSTSP DI AP  +G A      V TSPLDVERVA P  AP     A                                 GQKRRL QS GSCFVPCARRR S EG+  R V        VGGE   + A  RG
Sbjct:  390 DFSPLTTFSPHGAVKTKAVASHMVAGRRVVRRVSSSPRCGGAAVARPPLVSTSPWDIAAPPPLGRAGPEPRRVYTSPLDVERVA-PRRAPIVAVQACPDLPDALRRQSVGVGGGG--------------GQKRRLHQSSGSCFVPCARRRRSVEGKDVRRVGVADAGGHVGGERVEEDAAGRG 557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9174.18195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9F0_9PHAE4.450e-1945.90Cyclin N-terminal domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9174contigL-elsbetiae_contig9174:4145..5097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue9.4e-09
Seed eggNOG ortholog2880.D8LFC1
KEGG koko:K06627
KEGG Pathwayko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.cell division
EggNOG OGsCOG5024@1,KOG0654@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons1
Model size953
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9174.18195.1prot_L-elsbetiae_contig9174.18195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9174 4186..4836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.9290175-UTR-L-elsbetiae_contig9174:4144..41851622816990.9290175-UTR-L-elsbetiae_contig9174:4144..4185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9174 4145..4185 +
1691683966.0350769-UTR-L-elsbetiae_contig9174:4144..41851691683966.0350769-UTR-L-elsbetiae_contig9174:4144..4185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9174 4145..4185 +
1622816990.9497743-UTR-L-elsbetiae_contig9174:4836..50971622816990.9497743-UTR-L-elsbetiae_contig9174:4836..5097Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9174 4837..5097 +
1691683966.0697424-UTR-L-elsbetiae_contig9174:4836..50971691683966.0697424-UTR-L-elsbetiae_contig9174:4836..5097Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9174 4837..5097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.9398952-CDS-L-elsbetiae_contig9174:4185..48361622816990.9398952-CDS-L-elsbetiae_contig9174:4185..4836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9174 4186..4836 +
1691683966.056291-CDS-L-elsbetiae_contig9174:4185..48361691683966.056291-CDS-L-elsbetiae_contig9174:4185..4836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9174 4186..4836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9174.18195.1

>prot_L-elsbetiae_contig9174.18195.1 ID=prot_L-elsbetiae_contig9174.18195.1|Name=mRNA_L-elsbetiae_contig9174.18195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MPPRAAAPHVVTGRRVIRRVSSSPRATAPRPRVSTSPRDIVAPSGIGAAH
QTSVSVTSPLDVERVAAPAAAPWRVSNASSSSSSSSQQYFELAEASRRQS
GGGGGGGGGGRGQKRRLEQSEGSCFVPCARRRSSEGRTGRSVEVGGEGHA
QQARFRGMGAAVREQGVGFAHHQAPATNAQQWDGRGPGRTSASRQQLLPS
LTGYSAGRTVNRSASR*
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mRNA from alignment at L-elsbetiae_contig9174:4145..5097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9174.18195.1 ID=mRNA_L-elsbetiae_contig9174.18195.1|Name=mRNA_L-elsbetiae_contig9174.18195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=953bp|location=Sequence derived from alignment at L-elsbetiae_contig9174:4145..5097+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACTTTTCTCCGCCGAAGACATTCGGCCCGCGCGGCGGCATGCCGCCC
AGGGCCGCTGCCCCGCACGTCGTGACCGGAAGGCGCGTCATTCGCCGGGT
GTCCTCCTCGCCGCGTGCCACGGCACCGAGACCTCGAGTTTCCACGTCGC
CGCGCGACATCGTGGCACCGTCGGGGATTGGGGCGGCGCACCAGACGTCT
GTGTCTGTCACCTCGCCTCTTGATGTGGAGCGGGTGGCAGCCCCTGCAGC
AGCGCCTTGGCGAGTGTCGAATGCCTCCTCCTCCTCCTCCTCCTCCTCCC
AGCAGTACTTCGAGCTGGCGGAAGCCTCGCGACGTCAGAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCAGGGGCCAGAAGAGGCGGCTCGAGCAATC
GGAAGGCAGCTGCTTCGTGCCCTGCGCTCGGCGGCGGTCGTCGGAGGGAA
GGACCGGCCGTTCAGTGGAGGTCGGCGGAGAGGGACACGCCCAGCAGGCG
CGGTTCCGAGGTATGGGTGCTGCCGTGCGAGAGCAAGGCGTCGGTTTTGC
CCATCACCAAGCACCGGCGACGAACGCGCAGCAGTGGGATGGACGAGGAC
CAGGCCGTACATCAGCTAGCCGCCAGCAGCTGTTGCCGAGCCTGACGGGC
TACTCAGCCGGCCGGACCGTCAACCGGTCAGCCAGCCGCTAGCCTTCGAC
GGGTGGGTCTCTACGCCCGGTGAAAAAAAACAGGCGCCGGTTTCTGGCCA
GGCTTGAGCTAGGCTGTGTTCGGGGATTGTTGGGCGGGGAGAGTATACTG
ACTACGTACGCTGCCGTTCCGTCCGTGCCTGTGTGGAGCGTCTGAACTCG
TGATGGTGCACTACTACTCCAGAGCTGTGCTGTGCGTGCGTGCGTGTGTG
TATTTGGAGTGAGCGATTAATTTTCCGCGTGTCTTTTTAAATAAATAAAA
AAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9174:4145..5097+

>mRNA_L-elsbetiae_contig9174.18195.1 ID=mRNA_L-elsbetiae_contig9174.18195.1|Name=mRNA_L-elsbetiae_contig9174.18195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig9174:4145..5097+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCCAGGGCCGCTGCCCCGCACGTCGTGACCGGAAGGCGCGTCAT
TCGCCGGGTGTCCTCCTCGCCGCGTGCCACGGCACCGAGACCTCGAGTTT
CCACGTCGCCGCGCGACATCGTGGCACCGTCGGGGATTGGGGCGGCGCAC
CAGACGTCTGTGTCTGTCACCTCGCCTCTTGATGTGGAGCGGGTGGCAGC
CCCTGCAGCAGCGCCTTGGCGAGTGTCGAATGCCTCCTCCTCCTCCTCCT
CCTCCTCCCAGCAGTACTTCGAGCTGGCGGAAGCCTCGCGACGTCAGAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCAGAAGAGGCGGCT
CGAGCAATCGGAAGGCAGCTGCTTCGTGCCCTGCGCTCGGCGGCGGTCGT
CGGAGGGAAGGACCGGCCGTTCAGTGGAGGTCGGCGGAGAGGGACACGCC
CAGCAGGCGCGGTTCCGAGGTATGGGTGCTGCCGTGCGAGAGCAAGGCGT
CGGTTTTGCCCATCACCAAGCACCGGCGACGAACGCGCAGCAGTGGGATG
GACGAGGACCAGGCCGTACATCAGCTAGCCGCCAGCAGCTGTTGCCGAGC
CTGACGGGCTACTCAGCCGGCCGGACCGTCAACCGGTCAGCCAGCCGCTA
GATGCCGCCCAGGGCCGCTGCCCCGCACGTCGTGACCGGAAGGCGCGTCA
TTCGCCGGGTGTCCTCCTCGCCGCGTGCCACGGCACCGAGACCTCGAGTT
TCCACGTCGCCGCGCGACATCGTGGCACCGTCGGGGATTGGGGCGGCGCA
CCAGACGTCTGTGTCTGTCACCTCGCCTCTTGATGTGGAGCGGGTGGCAG
CCCCTGCAGCAGCGCCTTGGCGAGTGTCGAATGCCTCCTCCTCCTCCTCC
TCCTCCTCCCAGCAGTACTTCGAGCTGGCGGAAGCCTCGCGACGTCAGAG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCAGAAGAGGCGGC
TCGAGCAATCGGAAGGCAGCTGCTTCGTGCCCTGCGCTCGGCGGCGGTCG
TCGGAGGGAAGGACCGGCCGTTCAGTGGAGGTCGGCGGAGAGGGACACGC
CCAGCAGGCGCGGTTCCGAGGTATGGGTGCTGCCGTGCGAGAGCAAGGCG
TCGGTTTTGCCCATCACCAAGCACCGGCGACGAACGCGCAGCAGTGGGAT
GGACGAGGACCAGGCCGTACATCAGCTAGCCGCCAGCAGCTGTTGCCGAG
CCTGACGGGCTACTCAGCCGGCCGGACCGTCAACCGGTCAGCCAGCCGCT
AG
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