mRNA_L-elsbetiae_contig9163.18188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9163.18188.1
Unique NamemRNA_L-elsbetiae_contig9163.18188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.030e-49
Identity = 129/165 (78.18%), Postives = 142/165 (86.06%), Query Frame = 1 
Query:   22 APGSNANASVPRGKRGKLKKMKKKYAEQDEHDRRLAMEALGKAPSHPEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNLKKSEAELTATLASLDPAVRERLSALVKPDDLDPFEVRALGQFNTADALDILDRFAEADLRKVRNRSGFLAGIMRKHGSAST 516
            AP    +A+VPRGKR KLK+MKKKYAEQD+ DR+LAMEALGK P      XXXXXXXXXXX     XXXXXXXXXXXXXXSKNL+K+EAEL AT+A+LD  VR RLS LVKPD+LDPFEVRALG+F+TADALDILDRFAEADLR+VRNRSGFLAGIMRKHGSAST
Sbjct:  907 APKKRMSANVPRGKRSKLKRMKKKYAEQDDDDRKLAMEALGKGPXXXXXXXXXXXXXXXXXRPGDRXXXXXXXXXXXXXXSKNLRKTEAELAATVAALDADVRGRLSELVKPDELDPFEVRALGKFDTADALDILDRFAEADLRRVRNRSGFLAGIMRKHGSAST 1071
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.320e-11
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:  346 LVKPDDLDPFEVRALGQFNTADALDILDRFAEADLRKVRNRSGFLAGIMRKHGS 507
            L+K  +LD FE+RAL +F   DAL IL+RFAEADLRKV N+SGFLAGIMRK+GS
Sbjct: 1109 LLKATELDAFELRALSRFEPDDALRILERFAEADLRKVGNKSGFLAGIMRKYGS 1162
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.460e-10
Identity = 54/164 (32.93%), Postives = 78/164 (47.56%), Query Frame = 1 
Query:   22 APGSNANASVPRGKRGKLKKMKKKYAEQDEHDRRLAMEALGKAPSHPEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNLKKSEAELTATLASLDPAVRERLSALV-----KPDDLDPFEVRALGQFNTADALDILDRFAEADLRKVRNRSGFLAGIMRK 498
            AP      ++PRGKRGKL+K+K++YA+QDE D  L   A+G      E                                ++ L+  + +    L+ + P VRE L ALV     K ++LD FE+ AL        L ++  F E+DLRK  N+SG LAGI+R+
Sbjct:  881 APSETGAGTLPRGKRGKLRKVKRRYADQDEEDLALHRLAVGHDKLVDE------ESGSGAGENTLDDAQGAARTVASQDIARYLRGDKGD---ALSGMLPQVREALEALVRQRLVKLEELDTFELTALAALELEQGLQVVAAFGESDLRKAGNKSGMLAGILRR 1035
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A7S1ITM1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ITM1_9EUGL)

HSP 1 Score: 56.6 bits (135), Expect = 9.280e-6
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  313 LDPAVRERLS-----ALVKPDDLDPFEVRALGQFNTADALDILDRFAEADLRKVRNRSGFLAGIMRK 498
            L P V+ERL+      L+ P DLDP  + ++ QF     L IL++ + ADL  +RN++GFLAGIM++
Sbjct:  248 LPPVVQERLNLFYSMGLMNPSDLDPAILESMAQFPAETGLAILEKLSTADLANIRNKNGFLAGIMKR 314
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A2R5G0G8_9STRA (Nuclear export mediator factor Nemf n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0G8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.670e-5
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   25 PGSNANASVPRGKRGKLKKMKKKYAEQDEHDRRLAMEALG 144
            P  NAN  +PR KRGKLKKMKKKY +Q E DRRLAM ALG
Sbjct:  925 PAKNANTELPRRKRGKLKKMKKKYGDQTEEDRRLAMIALG 964
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A7S0LZI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZI5_9CRYP)

HSP 1 Score: 55.5 bits (132), Expect = 2.170e-5
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  313 LDPAVRERLSALV-----KPDDLDPFEVRALGQFNTADALDILDRFAEADLRKVRNRSGFLAGIMRK 498
            + P+VRERL AL      + D++D   +++L +F+ A AL IL  F EAD+  +RN+S FLAG+M++
Sbjct:   93 MKPSVRERLEALFASGKCRRDEIDFKIMQSLSEFSEASALQILINFGEADMSSIRNKSAFLAGVMKR 159
[Close]
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Match: A0A1Y5I896_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I896_OSTTA)

HSP 1 Score: 53.9 bits (128), Expect = 9.230e-5
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   16 DLAPGSNANASVPRGKRGKLKKMKKKYAEQDEHDRRLAMEALG 144
            D A GS+AN   PRGK  KLKK+K KYA+QDE DR LAM+ LG
Sbjct:  551 DRADGSSANKPAPRGKAAKLKKIKAKYADQDEEDRELAMKLLG 593
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9163.18188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.030e-4978.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA1.320e-1170.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1AHC6_9STRA1.460e-1032.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1ITM1_9EUGL9.280e-643.28Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2R5G0G8_9STRA1.670e-572.50Nuclear export mediator factor Nemf n=1 Tax=Hondae... [more]
A0A7S0LZI5_9CRYP2.170e-543.28Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A1Y5I896_OSTTA9.230e-565.12Uncharacterized protein n=1 Tax=Ostreococcus tauri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9163contigL-elsbetiae_contig9163:1009..3653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue8.8e-45
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons5
Model size709
Cds size705
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9163.18188.1prot_L-elsbetiae_contig9163.18188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9163 1011..3653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.5718212-CDS-L-elsbetiae_contig9163:1010..12841622816990.5718212-CDS-L-elsbetiae_contig9163:1010..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 1011..1284 -
1691683965.7919393-CDS-L-elsbetiae_contig9163:1010..12841691683965.7919393-CDS-L-elsbetiae_contig9163:1010..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 1011..1284 -
1622816990.5832741-CDS-L-elsbetiae_contig9163:1845..20081622816990.5832741-CDS-L-elsbetiae_contig9163:1845..2008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 1846..2008 -
1691683965.8043437-CDS-L-elsbetiae_contig9163:1845..20081691683965.8043437-CDS-L-elsbetiae_contig9163:1845..2008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 1846..2008 -
1622816990.5941088-CDS-L-elsbetiae_contig9163:2402..25651622816990.5941088-CDS-L-elsbetiae_contig9163:2402..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 2403..2565 -
1691683965.817497-CDS-L-elsbetiae_contig9163:2402..25651691683965.817497-CDS-L-elsbetiae_contig9163:2402..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 2403..2565 -
1622816990.603746-CDS-L-elsbetiae_contig9163:3267..33251622816990.603746-CDS-L-elsbetiae_contig9163:3267..3325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 3268..3325 -
1691683965.8290746-CDS-L-elsbetiae_contig9163:3267..33251691683965.8290746-CDS-L-elsbetiae_contig9163:3267..3325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 3268..3325 -
1622816990.6187134-CDS-L-elsbetiae_contig9163:3606..36531622816990.6187134-CDS-L-elsbetiae_contig9163:3606..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 3607..3653 -
1691683965.8418834-CDS-L-elsbetiae_contig9163:3606..36531691683965.8418834-CDS-L-elsbetiae_contig9163:3606..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9163 3607..3653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9163.18188.1

>prot_L-elsbetiae_contig9163.18188.1 ID=prot_L-elsbetiae_contig9163.18188.1|Name=mRNA_L-elsbetiae_contig9163.18188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
KRGGLDLAPGSNANASVPRGKRGKLKKMKKKYAEQDEHDRRLAMEALGKA
PSHPEGGAAAAAGGRRRFREGDRKEAAAAEAAAAAAASKNLKKSEAELTA
TLASLDPAVRERLSALVKPDDLDPFEVRALGQFNTADALDILDRFAEADL
RKVRNRSGFLAGIMRKHGSASTTNSGGSTAAASTAAAAKLATGEGEDAST
ATGLSPVPPPPPPPPLPADAAEKEQEGVVGVGVGK
back to top

mRNA from alignment at L-elsbetiae_contig9163:1009..3653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9163.18188.1 ID=mRNA_L-elsbetiae_contig9163.18188.1|Name=mRNA_L-elsbetiae_contig9163.18188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2645bp|location=Sequence derived from alignment at L-elsbetiae_contig9163:1009..3653- (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGGGGGGTCTCGACCTTGCGCCCGGCTCCAATGCCAATGCTAGGTG
AATACCAAGCACGGGGTTCTCGTGCTACCCATGGTATACGTGTTGTTGCT
GTTGTTGCTGTTGTAGTGGTGGTCTTGTTGCTGTCAGTCGCATTTGTGGC
CCGTGATGCGGTGTAATTTGTTCCTTGCCACCCATCCCTACCACCGTTCG
TCTCTTATCTTTCTCTTTTCTTCCCTTTCCCTTTCTCATTCCCGGAACGG
AACGGAACTTAACGAAACGGAACTTGGCGGAACGGAACTTGACGGAACGG
AACTTAACGGACGGAACGGAACGAACAGTGTTCCGCGCGGGAAACGGGGC
AAGCTCAAGAAAATGAAGAAGAAATACGCTGAACAGGTGGGAGATGGGTT
ATCTCATGGTGGAAGATAGAGGCCAGGGGCAAACGCAACTCAAGTGTACT
TACTCCGTAGGATATTTTGGTTCTACTTGGACCCGTCTTTGGCTATTTTG
TCACCGTGTGACCGGAATGACTAGTGAAACAGATGCCTTCACCGTGGGAT
GTCAGTCGAACACGCGCGGCTCATGTACAGGGTGAAGGTGGAAGTGAAAG
TGCTGAGCAGAGGTCGGGACATTTTTTTTTTAATTTTTCAGGTATATTTA
CTTCGTATGCAGACAGCGACAAGAAACAAAGTCACCAAATATGTACAACA
GCCACCAAGGCAACAAGTACTTCCGTTTGGCGATTCGCCACGAAGCCCAC
TTCCTCAATCGAGTGCAATCGTACGCGACACTTAGACCGCTCCCGTCTGC
GCCTGTCCACTCTTGTCTACTCTCTTCGGCAAAAAAGGGTTAGAAAACAA
CACCCGCCGCGTGCGGTATTTCTCTGCCACCACAGCGACAACCACCATGT
TTCACAGCAGTGTTGAAACAAACAGACGACCCTCAACCACCCCGTCCCCT
CCTCCCGCCTCCAAATCGCTTCTTGGTTTTGTTGTTGAGAGAAAATTAAT
CTATTAAAACTCCTCATCAAAAATGGAACCTTCCGCGCACTGAGGACGGC
TTCTTGTTTTTTTTTATTTTTTTTTATTTTGTTTTTAGGACGAGCACGAC
CGTAGGCTGGCCATGGAAGCTCTCGGAAAAGCGCCGTCACATCCGGAGGG
TGGGGCGGCGGCGGCGGCGGGCGGTCGCCGCCGCTTCCGAGAGGGGGACC
GCAAAGAAGCGGCGGCGGCGGAAGCGGCGGCGGCAGCAGCGGCGTCCAAG
AGTGAGTGCTTCACCGCCGGCCAATGCCAATGGATAAGGACTGGCCAAAC
GGGGGGGTGTGTTGTAGGGTGCAGGCGGGTTGGTGGGAAGGTGGGTGGGC
TTAGAAAAGAACATCACACCCCCCTAGTTGGCGGTACATGTTGGGTGCAA
AAACGATGGGGAAGATGGGATCGCCAGCTACCACCACGCCCCCCTCCCCC
CTCCTGCAGCCCTGCGTCTCCTCACCCCCCCCTCTCTCCCCCTCCTGTCT
GCGTCTTCTCTCTCGATCGATGTACTCCTGCTCCCCCTCTTCCCTCTTCC
CCACGCTTACCCTCCCGGCCGTACAACGGGTGTCGTTACCGATCTCCCCG
TCAACCAAATCAACCCATCTCGGCAACCAAATCGAACGAACGCAGACCTG
AAGAAGTCGGAGGCGGAGCTGACCGCGACTCTGGCCTCGCTCGACCCCGC
GGTCCGGGAGCGGCTCTCGGCGCTGGTGAAGCCCGACGACCTCGACCCGT
TCGAGGTCCGCGCCTTGGGACAGTTCAACACCGCCGACGCCCTCGATATC
CTCGATCGGTGAGCCAGCAAGAACAAACACAAGCACACACACATGTTGTT
GTTGTTGTTGTTGTTTTTTCTCACATTAGCTCTCTAGTGCAGAACATCCT
CGGGGGCCCCGTGGTTACATGCTCACCTACGTACACACATACACATACGT
ATACATATGTAGGCTGTTCGCCACCCTTTCCGGTTGGTATGTTGCGCTTC
GAGCGAGACAAATCGACGGCTCGATTCCCTTTTCTCTGCGATGCTGTCTT
GTTTAGCGATAAATGATGCCCCAACCACGACAACCATCCACCAATAATGT
TTCTTGCTCGGCCCTTTTGCATTGTAGAGGATAACTTGACTTTTGACTCG
ACTTTACTCAGCTGTGTGCGCCTGCACTGTATACCACGCATGCGTGTTGC
AGTGTTGAGATAGATACAAGCGTACACGCGGCGCCAACAGGAACAGTAAC
AGCAACAGCAACACGCTGGATAGCAGCGCCGGAATCAACAACACTGCAAG
CTCGAAAGCTCTCGCGCGCCCTGCCCTAAAGCCTGCTCGCCTCTTCCCCC
CGGCATTTTGTATTTTCAGGTTTGCCGAGGCGGATCTCCGCAAAGTGCGC
AATCGTAGCGGATTTTTGGCTGGCATCATGCGCAAGCACGGCTCTGCGTC
CACCACGAACAGCGGCGGCAGCACCGCTGCTGCTTCTACCGCGGCGGCGG
CGAAGCTGGCGACAGGAGAGGGTGAGGATGCCTCGACCGCGACGGGCCTT
TCACCGGTGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCGCCGATGCGGC
AGAGAAGGAGCAGGAAGGTGTTGTTGGTGTTGGTGTTGGTAAGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9163:1009..3653-

>mRNA_L-elsbetiae_contig9163.18188.1 ID=mRNA_L-elsbetiae_contig9163.18188.1|Name=mRNA_L-elsbetiae_contig9163.18188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig9163:1009..3653- (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGGGGGGTCTCGACCTTGCGCCCGGCTCCAATGCCAATGCTAGAAG
AGGGGGGGTCTCGACCTTGCGCCCGGCTCCAATGCCAATGCTAGTGTTCC
GCGCGGGAAACGGGGCAAGCTCAAGAAAATGAAGAAGAAATACGCTGAAC
AGTGTTCCGCGCGGGAAACGGGGCAAGCTCAAGAAAATGAAGAAGAAATA
CGCTGAACAGGACGAGCACGACCGTAGGCTGGCCATGGAAGCTCTCGGAA
AAGCGCCGTCACATCCGGAGGGTGGGGCGGCGGCGGCGGCGGGCGGTCGC
CGCCGCTTCCGAGAGGGGGACCGCAAAGAAGCGGCGGCGGCGGAAGCGGC
GGCGGCAGCAGCGGCGTCCAAGAGACGAGCACGACCGTAGGCTGGCCATG
GAAGCTCTCGGAAAAGCGCCGTCACATCCGGAGGGTGGGGCGGCGGCGGC
GGCGGGCGGTCGCCGCCGCTTCCGAGAGGGGGACCGCAAAGAAGCGGCGG
CGGCGGAAGCGGCGGCGGCAGCAGCGGCGTCCAAGAACCTGAAGAAGTCG
GAGGCGGAGCTGACCGCGACTCTGGCCTCGCTCGACCCCGCGGTCCGGGA
GCGGCTCTCGGCGCTGGTGAAGCCCGACGACCTCGACCCGTTCGAGGTCC
GCGCCTTGGGACAGTTCAACACCGCCGACGCCCTCGATATCCTCGATCGA
CCTGAAGAAGTCGGAGGCGGAGCTGACCGCGACTCTGGCCTCGCTCGACC
CCGCGGTCCGGGAGCGGCTCTCGGCGCTGGTGAAGCCCGACGACCTCGAC
CCGTTCGAGGTCCGCGCCTTGGGACAGTTCAACACCGCCGACGCCCTCGA
TATCCTCGATCGGTTTGCCGAGGCGGATCTCCGCAAAGTGCGCAATCGTA
GCGGATTTTTGGCTGGCATCATGCGCAAGCACGGCTCTGCGTCCACCACG
AACAGCGGCGGCAGCACCGCTGCTGCTTCTACCGCGGCGGCGGCGAAGCT
GGCGACAGGAGAGGGTGAGGATGCCTCGACCGCGACGGGCCTTTCACCGG
TGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCGCCGATGCGGCAGAGAAG
GAGCAGGAAGGTGTTGTTGGTGTTGGTGTTGGTAAGGTTTGCCGAGGCGG
ATCTCCGCAAAGTGCGCAATCGTAGCGGATTTTTGGCTGGCATCATGCGC
AAGCACGGCTCTGCGTCCACCACGAACAGCGGCGGCAGCACCGCTGCTGC
TTCTACCGCGGCGGCGGCGAAGCTGGCGACAGGAGAGGGTGAGGATGCCT
CGACCGCGACGGGCCTTTCACCGGTGCCGCCGCCGCCGCCGCCGCCACCG
CTGCCCGCCGATGCGGCAGAGAAGGAGCAGGAAGGTGTTGTTGGTGTTGG
TGTTGGTAAG
back to top