mRNA_L-elsbetiae_contig9159.18184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9159.18184.1
Unique NamemRNA_L-elsbetiae_contig9159.18184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: D7FJ05_ECTSI (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ05_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 4.450e-73
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 1
Query:    1 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHDDKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQL+SFLEDQDVTL+SLGEHDDKRNKSWAPVGEE VLAALERIVDS HYPVLITCNTGKHRTG
Sbjct:    1 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTG 110          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A835YIK6_9STRA (Protein-tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 9.320e-46
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHDDK-----RNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            MFFPPV+F  VEEGLYRS LP EINYPFLERL LKTIIYL+PD+DIDAQL SFLEDQ+V L+ LGE D+      ++++   + EETV+ AL  +VD+ HYP+L+ C TGKHRTG
Sbjct:    1 MFFPPVNFAPVEEGLYRSGLPTEINYPFLERLKLKTIIYLFPDEDIDAQLESFLEDQEVKLVCLGEQDESAQLANKSRNNHMIAEETVIEALSYLVDTTHYPLLVMCGTGKHRTG 115          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A485KRG3_9STRA (Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KRG3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.570e-37
Identity = 60/111 (54.05%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHD--DKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PPV++G++EE LYRS +PNE+N+PFLERL L+ I+YL P++  +AQLLSF+E+Q++ LI LG +   + R K+W P+ EETVLAAL+ I+D  +YP+ +TC+ G+ RTG
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAPEEP-NAQLLSFVEEQEIELIVLGGNTKLENRRKAWEPMSEETVLAALDIILDRGNYPLFLTCHLGRDRTG 113          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A1V9YB19_9STRA (Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YB19_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.040e-35
Identity = 58/111 (52.25%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHD--DKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PPV++G++EE LYRS +PNE+N+PFLERL L+ I+YL P++  + QLLSF+E+Q++ L+ LG +   + R K+W P+ EETVLAAL+ I+D ++YP+ +TC+ G+ RTG
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAPEEP-NPQLLSFVEEQEIELVVLGCNTKLESRRKAWEPMSEETVLAALDIILDRSNYPLFLTCHLGRDRTG 113          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A024GQF6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQF6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.420e-34
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLG--EHDDKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PPV++G++EE LYRS  PNE+N+PFLERL L+ IIYL  ++  + Q  SF+E+Q++ LI LG   H + R K+W P+ EETVLAAL+ I+D ++YP+ ITC+ G+ RTG
Sbjct:    4 FIPPVNYGMIEEDLYRSGQPNELNFPFLERLNLRKIIYLAAEEP-NIQFQSFVEEQEIDLICLGGNAHMENRRKAWEPLSEETVLAALQIILDRSNYPLYITCHLGRDRTG 113          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: M4C493_HYAAE (Tyrosine-protein phosphatase domain-containing protein n=18 Tax=Oomycota TaxID=4762 RepID=M4C493_HYAAE)

HSP 1 Score: 124 bits (312), Expect = 6.460e-34
Identity = 59/111 (53.15%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHD--DKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PPV++G+VEE LYRS  PNE+N+PFLERL L+TIIYL  ++  + Q  SF+E+Q++ L+ LG +   + R KSW P+ EETVLAAL+ I+D ++YP+ +TC+ G+ RTG
Sbjct:    4 FIPPVNYGMVEEDLYRSGQPNELNFPFLERLNLRTIIYLALEEP-NPQFQSFVEEQEIQLVFLGGNTRMESRRKSWEPLSEETVLAALDIILDRSNYPLYLTCHLGRDRTG 113          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A507DVU8_9FUNG (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DVU8_9FUNG)

HSP 1 Score: 124 bits (311), Expect = 8.400e-34
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHDDKRN--KSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            + PP++FG+VEE LYRS  PN++N+PFLE+LGLKT++YL P++    + L+F+EDQ+ TL  +G      +   +W PV EE VLAAL  I++ A YP++I CN G+HRTG
Sbjct:    7 YIPPLNFGMVEENLYRSGQPNDLNFPFLEKLGLKTVVYLAPEEP-SQRFLNFIEDQEATLHHIGHPSSSTHLPSTWDPVSEEVVLAALAHILNPASYPLIIMCNLGRHRTG 116          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: M1VJ97_CYAM1 (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1VJ97_CYAM1)

HSP 1 Score: 123 bits (309), Expect = 1.380e-33
Identity = 55/109 (50.46%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHDDKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PP++F  VEE LYRS +PNE+NYPFLE+L L+ ++YL PD+ +  Q L+FL+D D+ L+ +G   D+    W P+ EE VLAAL+ I+D+ +YP+ + CN G+HRTG
Sbjct:    4 FIPPINFSWVEEDLYRSGVPNELNYPFLEKLNLRKVLYLSPDE-LPPQFLNFLDDHDIELVPVGWDSDQT--PWMPISEEVVLAALDVILDTENYPLHVMCNLGRHRTG 109          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A3R7JKP5_9STRA (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Oomycota TaxID=4762 RepID=A0A3R7JKP5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.640e-33
Identity = 59/111 (53.15%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    4 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHD--DKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PPV++G++EE LYRS  PNE+N+PFLERL L+TIIYL  ++  + Q  SF+E+Q++ LI LG +   + R K+W P+ EETVLAAL+ I+D ++YP+ ITC+ G+ RTG
Sbjct:   27 FIPPVNYGMIEEDLYRSGQPNELNFPFLERLNLRTIIYLALEEP-NPQFQSFVEEQEIQLIFLGGNTRMESRRKAWEPLSEETVLAALDIILDRSNYPLYITCHLGRDRTG 136          
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Match: A0A139ANM7_GONPJ (Protein-tyrosine phosphatase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANM7_GONPJ)

HSP 1 Score: 121 bits (304), Expect = 1.240e-32
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    4 FFPPV--SFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLLSFLEDQDVTLISLGEHDDKRNKSWAPVGEETVLAALERIVDSAHYPVLITCNTGKHRTG 330
            F PP+  +FG+VEE LYRS  PNE+N+PFLERLGLKTIIYL P+D  +   L+F++DQD+ +  LG        +W P+ EE VL AL+ I+D  +YPV++ CN G+HRTG
Sbjct:    5 FIPPLVRNFGMVEEDLYRSGQPNELNFPFLERLGLKTIIYLAPEDP-NQTFLNFVDDQDIQMHHLGTTTS--TNAWDPISEEVVLEALDIILDPKNYPVMVMCNLGRHRTG 112          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9159.18184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ05_ECTSI4.450e-7396.36Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835YIK6_9STRA9.320e-4664.35Protein-tyrosine phosphatase n=1 Tax=Tribonema min... [more]
A0A485KRG3_9STRA8.570e-3754.05Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1V9YB19_9STRA1.040e-3552.25Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID... [more]
A0A024GQF6_9STRA2.420e-3453.15Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
M4C493_HYAAE6.460e-3453.15Tyrosine-protein phosphatase domain-containing pro... [more]
A0A507DVU8_9FUNG8.400e-3450.45Tyrosine-protein phosphatase domain-containing pro... [more]
M1VJ97_CYAM11.380e-3350.46Tyrosine-protein phosphatase domain-containing pro... [more]
A0A3R7JKP5_9STRA1.640e-3353.15Tyrosine-protein phosphatase domain-containing pro... [more]
A0A139ANM7_GONPJ1.240e-3253.15Protein-tyrosine phosphatase n=1 Tax=Gonapodya pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9159contigL-elsbetiae_contig9159:3934..5168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue1.9e-56
Seed eggNOG ortholog2880.D7FJ05
Preferred nameOCA1
KEGG koko:K18043
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase, SIW14-like
Ec32 orthologEc-07_004920.1
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons2
Model size354
Cds size354
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816989.9042869-CDS-L-elsbetiae_contig9159:3933..40821622816989.9042869-CDS-L-elsbetiae_contig9159:3933..4082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9159 3934..4082 +
1691683965.2754765-CDS-L-elsbetiae_contig9159:3933..40821691683965.2754765-CDS-L-elsbetiae_contig9159:3933..4082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9159 3934..4082 +
1622816989.9141316-CDS-L-elsbetiae_contig9159:4963..51681622816989.9141316-CDS-L-elsbetiae_contig9159:4963..5168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9159 4964..5168 +
1691683965.287197-CDS-L-elsbetiae_contig9159:4963..51681691683965.287197-CDS-L-elsbetiae_contig9159:4963..5168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9159 4964..5168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9159.18184.1prot_L-elsbetiae_contig9159.18184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9159 3934..5168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9159.18184.1

>prot_L-elsbetiae_contig9159.18184.1 ID=prot_L-elsbetiae_contig9159.18184.1|Name=mRNA_L-elsbetiae_contig9159.18184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQL
LSFLEDQDVTLISLGEHDDKRNKSWAPVGEETVLAALERIVDSAHYPVLI
TCNTGKHRTGELKMLPS*
back to top

mRNA from alignment at L-elsbetiae_contig9159:3934..5168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9159.18184.1 ID=mRNA_L-elsbetiae_contig9159.18184.1|Name=mRNA_L-elsbetiae_contig9159.18184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1235bp|location=Sequence derived from alignment at L-elsbetiae_contig9159:3934..5168+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTCCCTCCTGTGAGCTTTGGTCTTGTCGAAGAGGGGCTCTACAG ATCTGCACTACCCAACGAGATCAATTATCCGTTTCTTGAGCGCCTTGGGC TCAAGACCATCATCTACCTCTACCCGGACGACGACATTGACGCACAGCTG TGAGTGTTCCAAGAGGGGCGAGGGGTTGGTTGGTCCCTGACGAGCGCCTT AACACGGCGGTATTATTATTTGACTACCATCTTCATTGTATTTATGCTCA TACATACGCTACTAACCCTAACCCTAACCCTACTACACTACAATCTGTAC ATGTACACTACCACTAATAGCTACTTCTACAAGCCGGTCGCCCCGGTGGT CTATCTAGTGGTTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCA ATCCCAAGTAGAAGCATTTATTTTGCGACTTTGCAGGTGAAAGCGATAAA AGCTGAAAAGCTCGTGAGTACCAAACTTCGATGTAATCACGTTGACGAGG GAAAGGGCCAGCTGAACCCTTCTCGCGATAAAACCCAAGGCAAGAACCGC AGGAGGAAGGTGGGGCAAAAAAAGAAAATAAAAAAGAAGAAAAAGCCCCA GTGTTCACCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACATACAA TGCACTGCAAAATGCAGTACCTCTAAGTACACCGCAAGGTGTAGTACATG TCTCCACTGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACAC ACACAATCTACAGAGTGTCTGTTGTATTTAGGCTGATACGTAGATAGACT CGCTGGTAGAGAAAATTTAGCTAAGCCATCTACAATAGATTCCTCTCTAA GATCATTTATCTAGTACTCTTGGAAGATATTATCTAGACTAGTCTAGCAA GGAACGCTGCCTTGTAGGTAAAGATGTATCTTAGTGTAGATACTCCCCCG CGTGCGCTCAATCCGTCGAATTCGCTGTGCGCACAATACCAATCGGCCGA ACCTAATCTACCGCCTGCCAACTGATCCAGGTTAAGTTTTTTGGAAGATC AAGACGTGACCCTAATATCGCTAGGAGAACACGACGACAAGCGCAACAAG AGTTGGGCACCTGTGGGGGAGGAGACCGTCCTGGCGGCCCTCGAACGCAT CGTTGACTCCGCTCATTATCCAGTCCTTATTACGTGCAACACGGGCAAGC ATAGAACAGGTGAGTTAAAGATGCTTCCGTCGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9159:3934..5168+

>mRNA_L-elsbetiae_contig9159.18184.1 ID=mRNA_L-elsbetiae_contig9159.18184.1|Name=mRNA_L-elsbetiae_contig9159.18184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig9159:3934..5168+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTCCCTCCTGTGAGCTTTGGTCTTGTCGAAGAGGGGCTCTACAG
ATCTGCACTACCCAACGAGATCAATTATCCGTTTCTTGAGCGCCTTGGGC
TCAAGACCATCATCTACCTCTACCCGGACGACGACATTGACGCACAGCTA
TGTTTTTCCCTCCTGTGAGCTTTGGTCTTGTCGAAGAGGGGCTCTACAGA
TCTGCACTACCCAACGAGATCAATTATCCGTTTCTTGAGCGCCTTGGGCT
CAAGACCATCATCTACCTCTACCCGGACGACGACATTGACGCACAGCTGT
TAAGTTTTTTGGAAGATCAAGACGTGACCCTAATATCGCTAGGAGAACAC
GACGACAAGCGCAACAAGAGTTGGGCACCTGTGGGGGAGGAGACCGTCCT
GGCGGCCCTCGAACGCATCGTTGACTCCGCTCATTATCCAGTCCTTATTA
CGTGCAACACGGGCAAGCATAGAACAGGTGAGTTAAAGATGCTTCCGTCG
TGAGTTAAGTTTTTTGGAAGATCAAGACGTGACCCTAATATCGCTAGGAG
AACACGACGACAAGCGCAACAAGAGTTGGGCACCTGTGGGGGAGGAGACC
GTCCTGGCGGCCCTCGAACGCATCGTTGACTCCGCTCATTATCCAGTCCT
TATTACGTGCAACACGGGCAAGCATAGAACAGGTGAGTTAAAGATGCTTC
CGTCGTGA
back to top