mRNA_L-elsbetiae_contig9154.18181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9154.18181.1
Unique NamemRNA_L-elsbetiae_contig9154.18181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9154.18181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9154contigL-elsbetiae_contig9154:5806..6214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size392
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9154.18181.1prot_L-elsbetiae_contig9154.18181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9154 5889..6214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816989.6333323-UTR-L-elsbetiae_contig9154:5805..58881622816989.6333323-UTR-L-elsbetiae_contig9154:5805..5888Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9154 5806..5888 -
1691683965.1072693-UTR-L-elsbetiae_contig9154:5805..58881691683965.1072693-UTR-L-elsbetiae_contig9154:5805..5888Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9154 5806..5888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816989.6438966-CDS-L-elsbetiae_contig9154:5888..59451622816989.6438966-CDS-L-elsbetiae_contig9154:5888..5945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 5889..5945 -
1691683965.1200671-CDS-L-elsbetiae_contig9154:5888..59451691683965.1200671-CDS-L-elsbetiae_contig9154:5888..5945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 5889..5945 -
1622816989.6540554-CDS-L-elsbetiae_contig9154:5962..62141622816989.6540554-CDS-L-elsbetiae_contig9154:5962..6214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 5963..6214 -
1691683965.1331606-CDS-L-elsbetiae_contig9154:5962..62141691683965.1331606-CDS-L-elsbetiae_contig9154:5962..6214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 5963..6214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9154.18181.1

>prot_L-elsbetiae_contig9154.18181.1 ID=prot_L-elsbetiae_contig9154.18181.1|Name=mRNA_L-elsbetiae_contig9154.18181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MWRCWFRGGAQKTHNATTGRGARIKRRRRRRRRRRSFVHEILHASTSIAI
AGGHGGLFGWGCLSSCRVCFIFVASGCVARRLAKSGGGRAEGSSTQQYMM
EC*
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mRNA from alignment at L-elsbetiae_contig9154:5806..6214-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9154.18181.1 ID=mRNA_L-elsbetiae_contig9154.18181.1|Name=mRNA_L-elsbetiae_contig9154.18181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=409bp|location=Sequence derived from alignment at L-elsbetiae_contig9154:5806..6214- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCGATGCTGGTTCCGGGGGGGAGCCCAGAAGACGCATAACGCGAC
TACGGGGCGGGGGGCAAGGATAAAGAGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGAGTTTTGTACATGAGATATTGCACGCGTCTACAAGTATTGCCATT
GCGGGCGGGCATGGAGGATTGTTCGGTTGGGGATGTCTCTCGTCATGTCG
TGTCTGTTTTATTTTCGTTGCGTCAGGGTGTGTTGCGAGGAGGCTGGCAA
AAGTCGCGGGGGGGAAAAGTCGGGGGGGGGGCGCGCGGAGGGGAGCAGTA
CACAGCAGTATATGATGGAGTGCTAAAAAAAAAAAAAAAAACGCGCCGTA
GTACTACTGTCGTACCCTTCTCTTTGGTTTGGTGGCTTGCGTAGTGAGAA
AATTGCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9154:5806..6214-

>mRNA_L-elsbetiae_contig9154.18181.1 ID=mRNA_L-elsbetiae_contig9154.18181.1|Name=mRNA_L-elsbetiae_contig9154.18181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9154:5806..6214- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCGATGCTGGTTCCGGGGGGGAGCCCAGAAGACGCATAACGCGAC
TACGGGGCGGGGGGCAAGGATAAAGAGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGAGTTTTGTACATGAGATATTGCACGCGTCTACAAGTATTGCCATT
GCGGGCGGGCATGGAGGATTGTTCGGTTGGGGATGTCTCTCGTCATGTCG
TGTCTGTTTTATTTTCGTTGCGTCAGGGTGTGTTGCGAGGAGGCTGGCAA
AAATGTGGCGATGCTGGTTCCGGGGGGGAGCCCAGAAGACGCATAACGCG
ACTACGGGGCGGGGGGCAAGGATAAAGAGGAGGAGGAGGAGGAGGAGGAG
GCGGAGGAGTTTTGTACATGAGATATTGCACGCGTCTACAAGTATTGCCA
TTGCGGGCGGGCATGGAGGATTGTTCGGTTGGGGATGTCTCTCGTCATGT
CGTGTCTGTTTTATTTTCGTTGCGTCAGGGTGTGTTGCGAGGAGGCTGGC
AAAATCGGGGGGGGGGCGCGCGGAGGGGAGCAGTACACAGCAGTATATGA
TGGAGTGCTAATCGGGGGGGGGGCGCGCGGAGGGGAGCAGTACACAGCAG
TATATGATGGAGTGCTAA
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