mRNA_L-elsbetiae_contig9141.18170.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9141.18170.1
Unique NamemRNA_L-elsbetiae_contig9141.18170.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9141.18170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9141contigL-elsbetiae_contig9141:4373..4994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9141.18170.1prot_L-elsbetiae_contig9141.18170.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9141 4534..4854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.8329847-UTR-L-elsbetiae_contig9141:4372..45331622816988.8329847-UTR-L-elsbetiae_contig9141:4372..4533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9141 4373..4533 +
1691683964.4838982-UTR-L-elsbetiae_contig9141:4372..45331691683964.4838982-UTR-L-elsbetiae_contig9141:4372..4533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9141 4373..4533 +
1622816988.8580103-UTR-L-elsbetiae_contig9141:4854..49941622816988.8580103-UTR-L-elsbetiae_contig9141:4854..4994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9141 4855..4994 +
1691683964.5084245-UTR-L-elsbetiae_contig9141:4854..49941691683964.5084245-UTR-L-elsbetiae_contig9141:4854..4994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9141 4855..4994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.8445365-CDS-L-elsbetiae_contig9141:4533..48541622816988.8445365-CDS-L-elsbetiae_contig9141:4533..4854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9141 4534..4854 +
1691683964.4948668-CDS-L-elsbetiae_contig9141:4533..48541691683964.4948668-CDS-L-elsbetiae_contig9141:4533..4854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9141 4534..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9141.18170.1

>prot_L-elsbetiae_contig9141.18170.1 ID=prot_L-elsbetiae_contig9141.18170.1|Name=mRNA_L-elsbetiae_contig9141.18170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MHQARNVSTNTQSYGAGYIMRRTRRCDNRSYLVRVPHPPRPGLVAAAQPQ
NSIHTHTSGNMQKTTKNNCTSRRPSCLLRSIPLKTRDLEVANAKLVGIYA
TPQQRE*
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mRNA from alignment at L-elsbetiae_contig9141:4373..4994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9141.18170.1 ID=mRNA_L-elsbetiae_contig9141.18170.1|Name=mRNA_L-elsbetiae_contig9141.18170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=622bp|location=Sequence derived from alignment at L-elsbetiae_contig9141:4373..4994+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTTCTGCTATCTTTCCGAAAAAGACCCGTTTTGAGGCATCAATGCCTT
CTTCATCATGGTGGGTGTGCTAGCAACCAAAAACTACAGTTTTTTTTACC
AATCAGCCCCCCTCTCCTCCCATCTGTCAAGGCGTGTGTGGTGGTGGGAA
AATGCAAACCTATGCACCAAGCAAGGAATGTTTCTACGAACACACAGAGC
TACGGAGCTGGCTACATTATGCGCCGCACACGGAGGTGTGACAACCGAAG
CTATTTGGTACGCGTGCCTCACCCACCGCGGCCCGGTTTAGTGGCGGCGG
CTCAACCTCAAAACAGCATACATACACACACATCGGGCAACATGCAAAAA
ACGACCAAAAACAACTGCACTTCGAGACGCCCCTCTTGCCTTCTGCGAAG
CATTCCTTTAAAAACAAGAGACCTCGAGGTCGCAAACGCCAAGCTCGTCG
GCATCTACGCAACACCACAGCAACGCGAGTAAACAATACGTCTAACAAAA
TACATGCCTTGGCGGCGGATGGCTAAAGCACCAAACCTCAGAAGCGGCAA
GGAAATGATGCGTGACATTTCTCCCGCCTCCTCAAGCGGAACGCGTTCAC
TCAACGGTGGGCTATAATTAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9141:4373..4994+

>mRNA_L-elsbetiae_contig9141.18170.1 ID=mRNA_L-elsbetiae_contig9141.18170.1|Name=mRNA_L-elsbetiae_contig9141.18170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig9141:4373..4994+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCAAGCAAGGAATGTTTCTACGAACACACAGAGCTACGGAGCTGG
CTACATTATGCGCCGCACACGGAGGTGTGACAACCGAAGCTATTTGGTAC
GCGTGCCTCACCCACCGCGGCCCGGTTTAGTGGCGGCGGCTCAACCTCAA
AACAGCATACATACACACACATCGGGCAACATGCAAAAAACGACCAAAAA
CAACTGCACTTCGAGACGCCCCTCTTGCCTTCTGCGAAGCATTCCTTTAA
AAACAAGAGACCTCGAGGTCGCAAACGCCAAGCTCGTCGGCATCTACGCA
ACACCACAGCAACGCGAGTAAATGCACCAAGCAAGGAATGTTTCTACGAA
CACACAGAGCTACGGAGCTGGCTACATTATGCGCCGCACACGGAGGTGTG
ACAACCGAAGCTATTTGGTACGCGTGCCTCACCCACCGCGGCCCGGTTTA
GTGGCGGCGGCTCAACCTCAAAACAGCATACATACACACACATCGGGCAA
CATGCAAAAAACGACCAAAAACAACTGCACTTCGAGACGCCCCTCTTGCC
TTCTGCGAAGCATTCCTTTAAAAACAAGAGACCTCGAGGTCGCAAACGCC
AAGCTCGTCGGCATCTACGCAACACCACAGCAACGCGAGTAA
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