mRNA_L-elsbetiae_contig9115.18146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9115.18146.1
Unique NamemRNA_L-elsbetiae_contig9115.18146.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A7S2W3U1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3U1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.960e-23
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H  H+V L+R  L  A L P  VD+ICYT+GPGMGGPL+SCA+CARTL+QLW   +V VNHCVG
Sbjct:  120 RETQKHHQAHIVGLIRTALEQAGLEPSQVDLICYTKGPGMGGPLQSCAICARTLSQLWSVPLVGVNHCVG 189
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A6S7ZQS1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZQS1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.920e-23
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H  HVV +VR  L +A++ PE VD IC+T+GPGMGGPL SCA+CARTL+QLWG  ++ VNHCVG
Sbjct:   62 RETAWHHQNHVVQIVRTALNEANITPEQVDCICFTKGPGMGGPLTSCAICARTLSQLWGKPLIGVNHCVG 131
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: UPI0007121025 (glycoprotein endopeptidase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007121025)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-22
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H QHV++LVR  L  A + P+D+D+IC+T+GPGMGGPL SCAV ARTL+ LW   +VAVNHCVG
Sbjct:   53 RETAWHHQQHVISLVRHALTTAKMEPKDIDIICFTKGPGMGGPLTSCAVAARTLSLLWHKPLVAVNHCVG 122
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: M4C1E6_HYAAE (N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1E6_HYAAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.380e-22
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H  HVVA+VR  LV+A++ P+++D ICYT+GPGMGGPLRS AVCAR L+ LW   +V VNHCVG
Sbjct:   44 RETAWHHQNHVVAIVRAALVEANVSPDELDCICYTKGPGMGGPLRSAAVCARMLSLLWKKPLVGVNHCVG 113
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A1Y1Y194_9FUNG (tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y194_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 1.740e-22
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            RD    H +HV+ L+++ L +A L P+D+DVICYT+GPGMGGPL S A+ ARTL+QLWG  +V VNHC+G
Sbjct:   49 RDTAAHHREHVLPLIKRSLEEAKLTPKDIDVICYTKGPGMGGPLVSVAIVARTLSQLWGKPIVGVNHCIG 118
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A7S2WC24_9STRA (N(6)-L-threonylcarbamoyladenine synthase (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC24_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.780e-22
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H  HVV +VR+ L +A+++PE++D IC+T+GPGMG PL SCA+CARTL+ LWG  +V VNHCVG
Sbjct:   56 RETAWHHQAHVVGIVREALNEANIKPEEIDCICFTQGPGMGAPLNSCAMCARTLSVLWGKPLVGVNHCVG 125
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A2D4BH80_PYTIN (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH80_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 5.280e-22
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R+    H  H V +VR  LV+A++ P+D+DVICYT+GPGMGGPLRS AVCAR L+ LW   +V VNHCVG
Sbjct:   61 RETAWHHQNHAVGIVRAALVEANISPKDIDVICYTKGPGMGGPLRSAAVCARMLSLLWKKPLVGVNHCVG 130
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A0D2WMC0_CAPO3 (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMC0_CAPO3)

HSP 1 Score: 94.7 bits (234), Expect = 1.150e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            RD    H Q+V++L++Q L  ASL+P D+DVICYT+GPG+G PL S AV ART+AQLW   +VAVNHC+G
Sbjct:   44 RDTAKHHQQYVLSLLQQALTSASLKPADIDVICYTKGPGLGAPLVSAAVVARTVAQLWDKPMVAVNHCIG 113
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BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A836CHZ2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.160e-21
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCVG 210
            R     H QH+ ALVR  L  A +   DV VIC+T+GPGMGGPL +CAVCARTL+QLWG  ++AVNHCVG
Sbjct:   69 RQTAQHHQQHITALVRLALKQAGVGAADVSVICFTKGPGMGGPLCACAVCARTLSQLWGKPLMAVNHCVG 138
[Close]
BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Match: A0A7S0ENS7_9CRYP (N(6)-L-threonylcarbamoyladenine synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ENS7_9CRYP)

HSP 1 Score: 90.1 bits (222), Expect = 4.090e-21
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   19 HTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVCARTLAQLWGCDVVAVNHCV 207
            H ++VV LV+Q + +A+++PED+D ICYT+GPGMGGPLR CAV AR LAQ+W   ++ VNHCV
Sbjct:   28 HRKYVVQLVQQAIREAAIKPEDLDCICYTKGPGMGGPLRVCAVVARMLAQMWKKPLIGVNHCV 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9115.18146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W3U1_9STRA1.960e-2360.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A6S7ZQS1_9STRA3.920e-2360.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
UPI00071210251.260e-2260.00glycoprotein endopeptidase n=1 Tax=Blastocystis sp... [more]
M4C1E6_HYAAE1.380e-2260.00N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=H... [more]
A0A1Y1Y194_9FUNG1.740e-2258.57tRNA N6-adenosine threonylcarbamoyltransferase n=1... [more]
A0A7S2WC24_9STRA3.780e-2257.14N(6)-L-threonylcarbamoyladenine synthase (Fragment... [more]
A0A2D4BH80_PYTIN5.280e-2260.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A0D2WMC0_CAPO31.150e-2160.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A836CHZ2_9STRA1.160e-2161.43Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S0ENS7_9CRYP4.090e-2160.32N(6)-L-threonylcarbamoyladenine synthase (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9115contigL-elsbetiae_contig9115:7097..7882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score95.5
Seed ortholog evalue1e-17
Seed eggNOG ortholog192875.XP_004349183.1
Preferred nameKAE1
KEGG rclassRC00070,RC00416
KEGG koko:K01409
KEGG ReactionR10648
Hectar predicted targeting categoryother localisation
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. The EKC KEOPS complex also promotes both telomere uncapping and telomere elongation. The complex is required for efficient recruitment of transcriptional coactivators
EggNOG OGs38BGR@33154,COG0533@1,KOG2708@2759
EC2.3.1.234
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816986.785816-CDS-L-elsbetiae_contig9115:7096..72641622816986.785816-CDS-L-elsbetiae_contig9115:7096..7264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9115 7097..7264 +
1691683962.9483504-CDS-L-elsbetiae_contig9115:7096..72641691683962.9483504-CDS-L-elsbetiae_contig9115:7096..7264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9115 7097..7264 +
1622816986.8006058-CDS-L-elsbetiae_contig9115:7840..78821622816986.8006058-CDS-L-elsbetiae_contig9115:7840..7882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9115 7841..7882 +
1691683962.959911-CDS-L-elsbetiae_contig9115:7840..78821691683962.959911-CDS-L-elsbetiae_contig9115:7840..7882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9115 7841..7882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9115.18146.1prot_L-elsbetiae_contig9115.18146.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9115 7097..7882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9115.18146.1

>prot_L-elsbetiae_contig9115.18146.1 ID=prot_L-elsbetiae_contig9115.18146.1|Name=mRNA_L-elsbetiae_contig9115.18146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
RDCHTRHTQHVVALVRQVLVDASLRPEDVDVICYTRGPGMGGPLRSCAVC
ARTLAQLWGCDVVAVNHCVG
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mRNA from alignment at L-elsbetiae_contig9115:7097..7882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9115.18146.1 ID=mRNA_L-elsbetiae_contig9115.18146.1|Name=mRNA_L-elsbetiae_contig9115.18146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig9115:7097..7882+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGACTGCCACACACGACACACGCAGCACGTGGTAGCGCTGGTTCGGCA
GGTGCTCGTGGACGCCTCGCTGCGGCCGGAGGACGTGGACGTGATCTGCT
ACACCAGGGGGCCCGGGATGGGCGGGCCGCTGCGGTCGTGCGCCGTGTGT
GCCAGGACTCTGGCCCAGGTACGTGGCACTGAATGACACGCAGATAGAGA
GAGAGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAATGACAGAGAGAAAGACAGAGAGACAGAGAGGCAGGG
ATAGAGACAATGATAGACAGAGAGAGAGAAAGAAGATGTGTATATAGATA
TAGAGACAGGTCAGTGTTCTTCCAACAGCGTGCTTCGACCCGTCCAACTC
GCCTCCTATGTACTTCGAAGTATATCTCTACAAGCATACTCCACATTTGC
CTGTCTCCCGCCGCTCTCTTGCACGATCTGACGAGACACGCTTCTGCTGC
ATGGCATGCCTGCTTCGGCCCCCAGACGGCTCTTTTTTTTTTACTTCGTG
GCCTTGACTGACTGATGATCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCCCCACCGCCCGCAACGCCCGCAACGCC
CGCAACGCCCGCAACGCCCGCAACGTTTTTTGAACCCTCTTCAGCTTTGG
GGCTGTGACGTGGTAGCGGTGAACCACTGCGTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9115:7097..7882+

>mRNA_L-elsbetiae_contig9115.18146.1 ID=mRNA_L-elsbetiae_contig9115.18146.1|Name=mRNA_L-elsbetiae_contig9115.18146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig9115:7097..7882+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGACTGCCACACACGACACACGCAGCACGTGGTAGCGCTGGTTCGGCA
GGTGCTCGTGGACGCCTCGCTGCGGCCGGAGGACGTGGACGTGATCTGCT
ACACCAGGGGGCCCGGGATGGGCGGGCCGCTGCGGTCGTGCGCCGTGTGT
GCCAGGACTCTGGCCCAGCGTGACTGCCACACACGACACACGCAGCACGT
GGTAGCGCTGGTTCGGCAGGTGCTCGTGGACGCCTCGCTGCGGCCGGAGG
ACGTGGACGTGATCTGCTACACCAGGGGGCCCGGGATGGGCGGGCCGCTG
CGGTCGTGCGCCGTGTGTGCCAGGACTCTGGCCCAGCTTTGGGGCTGTGA
CGTGGTAGCGGTGAACCACTGCGTCGGGCTTTGGGGCTGTGACGTGGTAG
CGGTGAACCACTGCGTCGGG
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