mRNA_L-elsbetiae_contig9023.18046.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9023.18046.1
Unique NamemRNA_L-elsbetiae_contig9023.18046.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9023.18046.1 vs. uniprot
Match: A0A6H5KEE9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEE9_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 2.200e-151
Identity = 238/331 (71.90%), Postives = 261/331 (78.85%), Query Frame = 1 
Query:    1 ASQSIHDGVTRLTLVYKANPSEAASKSMSKEMGGFCQQMVASLTLLSSVGASRAMVSYFSVGVRAVLHSVKDLIEALLDPSRQARLNGLTGMVWQSCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEFAEXXXXXXXXXXXXXXXXXXTTDLDEQFAAKVTVGGKESGEDKGKG-YDDLDFDDMDEDYSTAELQCVQASIDILRVFRRCLKVANESFNTLDSARSKGAEDEAAAEAVGEGWLKRKLEWAISVQAHLQDANEYAGEVGVLLYPPLDGGELLGRANDLERSMISFCDVFYACDEGGDGGGESPLQKAVEEKLGALRAAVEAL 990
            ASQSIHDGVTRL LVYKANPSE AS+SMS+EMGGFCQQMVASLTLLSSVGAS++MV+YFS GVRAVLHSVKDLI ALLDPSR ARLNGLTG VWQ+CKELQQAPKTNKLACRRQMMQWSVAVKDTIDEF E                     LDEQFAAKVTVGG   GE   +G +DD DFD MDE+Y  AEL CV+AS+D+LRVFRRCLK AN+S N+LDS   +  E  A A   GEGWL+ KLEWA SVQ HL DANE AGEVGVLLYPPLDGGELLGRANDLE+S+ +F +VF A  EG +   ESPL+KAV EKLG LRAA+E L
Sbjct:   55 ASQSIHDGVTRLNLVYKANPSEVASESMSREMGGFCQQMVASLTLLSSVGASKSMVTYFSAGVRAVLHSVKDLIGALLDPSRHARLNGLTGTVWQTCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEFVEAAKTAAMANAGKSESAGDKGGLDEQFAAKVTVGGAGEGEVGAEGTFDDFDFDGMDENYGAAELSCVEASVDVLRVFRRCLKAANDSLNSLDSPEPQ-EESGATAGPAGEGWLQGKLEWAKSVQTHLDDANECAGEVGVLLYPPLDGGELLGRANDLEKSLAAFFEVFSAGGEGTNSEMESPLRKAVVEKLGVLRAALEKL 384
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BLAST of mRNA_L-elsbetiae_contig9023.18046.1 vs. uniprot
Match: A0A836CN71_9STRA (Grap2 and cyclin-D-interacting-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN71_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.060e-25
Identity = 96/335 (28.66%), Postives = 149/335 (44.48%), Query Frame = 1 
Query:    1 ASQSIHDGVTRLTLVYKANPSEAASKSMSKEMGGFCQQMVASLT--LLSSVGASRAMVSYFSVGVRAVLHSVKDLIEALL-DPSRQARLNGLTGMVWQSCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEF-----AEXXXXXXXXXXXXXXXXXXTTDLDEQFAAKVTVGGKESGEDKGKGYDDL----DFDDMDED-YSTAELQCVQASIDILRVFRRCLKVANESFNTLDSARSKGAEDEAAAEAVGEGWLKRKLEWAISVQAHLQDANEYAGEVGVLLYPPLDGGELLGRANDLERSMISFCDVFYACDEGGDGGGESPLQKAVEEKLGA 966
            A+ SI    TR TL++K  P    +  M  EMG     + +SL   L    G S ++       VRAV  ++ +L++++   PS +   N LTG +W++CK + + P TNKLA R Q+M  S+++KDTIDEF     A                   + D       K     ++   D    +DDL    D +  DED  S AE +   A +++LR  R C+K AN++                 A A G G  +  + WA  +   +Q   E  G+VG+ LYPP++G  ++  A+     + +  D   A  E  D      L+  + E+L A
Sbjct:   60 AANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDS---FDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAM----------------AAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQER-DAAAVEHLRGVLTERLDA 374
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9023.18046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEE9_9PHAE2.200e-15171.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CN71_9STRA1.060e-2528.66Grap2 and cyclin-D-interacting-domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9023contigL-elsbetiae_contig9023:5456..7393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog4792.ETI33886
KEGG koko:K21626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Grap2 and cyclin-D-interacting
EggNOG OGs2ATRM@1,2RZSJ@2759,3QB09@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Ec32 ortholog descriptionCyclin-D1-binding protein 1
Ec32 orthologEc-17_001720.1
Exons4
Model size993
Cds size993
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9023.18046.1prot_L-elsbetiae_contig9023.18046.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9023 5456..7393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.1813405-CDS-L-elsbetiae_contig9023:5455..60971622816978.1813405-CDS-L-elsbetiae_contig9023:5455..6097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 5456..6097 -
1691683956.3189113-CDS-L-elsbetiae_contig9023:5455..60971691683956.3189113-CDS-L-elsbetiae_contig9023:5455..6097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 5456..6097 -
1622816978.192973-CDS-L-elsbetiae_contig9023:6327..64021622816978.192973-CDS-L-elsbetiae_contig9023:6327..6402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 6328..6402 -
1691683956.3324966-CDS-L-elsbetiae_contig9023:6327..64021691683956.3324966-CDS-L-elsbetiae_contig9023:6327..6402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 6328..6402 -
1622816978.2066426-CDS-L-elsbetiae_contig9023:6870..70151622816978.2066426-CDS-L-elsbetiae_contig9023:6870..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 6871..7015 -
1691683956.3510394-CDS-L-elsbetiae_contig9023:6870..70151691683956.3510394-CDS-L-elsbetiae_contig9023:6870..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 6871..7015 -
1622816978.218583-CDS-L-elsbetiae_contig9023:7262..73931622816978.218583-CDS-L-elsbetiae_contig9023:7262..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 7263..7393 -
1691683956.3627782-CDS-L-elsbetiae_contig9023:7262..73931691683956.3627782-CDS-L-elsbetiae_contig9023:7262..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 7263..7393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9023.18046.1

>prot_L-elsbetiae_contig9023.18046.1 ID=prot_L-elsbetiae_contig9023.18046.1|Name=mRNA_L-elsbetiae_contig9023.18046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp
ASQSIHDGVTRLTLVYKANPSEAASKSMSKEMGGFCQQMVASLTLLSSVG
ASRAMVSYFSVGVRAVLHSVKDLIEALLDPSRQARLNGLTGMVWQSCKEL
QQAPKTNKLACRRQMMQWSVAVKDTIDEFAEAAKAAALANAGNPGDPGDT
TDLDEQFAAKVTVGGKESGEDKGKGYDDLDFDDMDEDYSTAELQCVQASI
DILRVFRRCLKVANESFNTLDSARSKGAEDEAAAEAVGEGWLKRKLEWAI
SVQAHLQDANEYAGEVGVLLYPPLDGGELLGRANDLERSMISFCDVFYAC
DEGGDGGGESPLQKAVEEKLGALRAAVEAL*
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mRNA from alignment at L-elsbetiae_contig9023:5456..7393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9023.18046.1 ID=mRNA_L-elsbetiae_contig9023.18046.1|Name=mRNA_L-elsbetiae_contig9023.18046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig9023:5456..7393- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCCAATCAATCCACGACGGCGTGACCCGGTTGACCTTGGTATACAA
GGCCAACCCCTCGGAGGCAGCATCGAAGAGCATGTCGAAGGAGATGGGGG
GCTTTTGTCAGCAGATGGTGGCATCTCTAACGTGAGCCAGCTTTTGTAAC
TTCTGGCTGGTGACATATGAAGAAGATATCACACGAACACCGTCATATGC
ACATACTGCTGTCTGTAGAGAAGATTCCTACAGCAGTAGAAATACTTTAC
CAGGCCTGCCTGCTTGTGATGTCCTCCGTGCTTGCCTGTGATGCTGCTGA
ACCATGATATTTTACGGCCGGCCCCGCCCGTCTCTGACGTGCATTGTATT
GCATTGCATTACCCGCTCTCCCGTGCAGGTTGCTTTCATCTGTTGGAGCC
TCCAGAGCCATGGTGTCATATTTTTCTGTCGGGGTGAGAGCGGTACTGCA
CTCAGTGAAGGATCTGATCGAGGCACTTCTTGATCCATCTCGGCAAGCAC
GTCTCAATGGTCTCACAGGAATGGTGAGCGCTGAGAGCGGGATCCATGGC
TACCGAGATATTTTCCCCTTACATAGCCAATATCTGGCCTTGAGTGCATG
TACCAGAAGTGCAATTTGTTTTGACTCGGGATTCATCGTGATGCGCATCT
GAAATGCGCCATTAGCGGCTGCAAACCCGACCGAAACACGGGGCTTGCTG
GCCGTGTGTGCTGTGTGTGTCTGAGGCGGCAAAATGCGCTGGCTGTGCCA
TCTGCGGTACCAGAACAGCAGTTCCGAGCTTGTTTGCTTGCCTCTTATAC
CCAACAGAAAGAGCCGACACGTCGGACGTTGTTGGCATCGAGTATTTACA
GTGTTCGGCCACTTGATGAAAAAAAGCTCGAATGGTTTCAGCAGCAGTTG
CATGATGTGTTGCGCTTGACCGTTACAGCTCGTTTGCTTGCCATACTGCT
GCATTCACTATTTACCATATGTGTTTCCGGCCGGCCTTAAGGTGTGGCAA
TCATGCAAGGAGCTGCAACAGGCACCGAAGACCAACAAGCTCGCATGCCG
CCGTCAGATGATGCAGGTGAGTTTAGTGAAGGAATCTAATCCGGTCACTG
AACAACCAACATATATTTGACGTTTCAACCATATCGTGCCTGACTTCTCT
TGGCTGCCGTGGTTGTCAGCACAAGCTGTACCTGCCATTGCTCGTATCGC
ACGGCCATCAATGCCTTGCTGTCTGCTGTAGTCTGGCCATAACACCTTTA
AACACTCGCCCTCTGCTTCATACCCCTACGTGTACGTCTGGCGCAGTGGA
GTGTTGCCGTTAAGGACACGATCGACGAATTCGCCGAGGCAGCCAAGGCC
GCCGCTCTTGCCAACGCCGGCAACCCAGGTGATCCTGGGGATACAACAGA
CCTTGACGAACAATTTGCAGCCAAGGTTACCGTGGGTGGCAAAGAGAGCG
GGGAGGACAAAGGGAAAGGATACGACGACCTCGACTTTGACGATATGGAC
GAGGACTACAGCACGGCGGAGCTTCAGTGCGTGCAGGCGAGCATCGACAT
CCTGAGGGTGTTCCGGCGTTGCCTGAAGGTGGCGAACGAGTCTTTTAATA
CGCTGGACTCAGCCCGGTCCAAGGGCGCGGAAGACGAGGCCGCCGCTGAA
GCGGTGGGAGAGGGATGGTTGAAACGGAAGTTGGAGTGGGCGATATCAGT
TCAGGCCCATCTGCAAGACGCGAACGAGTATGCCGGGGAGGTCGGCGTTC
TGTTGTATCCTCCCTTGGACGGCGGGGAATTGTTGGGTAGAGCGAACGAT
CTGGAGAGGAGTATGATTTCTTTCTGCGATGTGTTTTACGCTTGCGACGA
GGGAGGAGATGGTGGAGGGGAATCGCCACTGCAAAAGGCTGTGGAGGAAA
AGCTAGGAGCGTTACGGGCGGCGGTAGAGGCGTTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9023:5456..7393-

>mRNA_L-elsbetiae_contig9023.18046.1 ID=mRNA_L-elsbetiae_contig9023.18046.1|Name=mRNA_L-elsbetiae_contig9023.18046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig9023:5456..7393- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCCAATCAATCCACGACGGCGTGACCCGGTTGACCTTGGTATACAA
GGCCAACCCCTCGGAGGCAGCATCGAAGAGCATGTCGAAGGAGATGGGGG
GCTTTTGTCAGCAGATGGTGGCATCTCTAACGCCAGCCAATCAATCCACG
ACGGCGTGACCCGGTTGACCTTGGTATACAAGGCCAACCCCTCGGAGGCA
GCATCGAAGAGCATGTCGAAGGAGATGGGGGGCTTTTGTCAGCAGATGGT
GGCATCTCTAACGTTGCTTTCATCTGTTGGAGCCTCCAGAGCCATGGTGT
CATATTTTTCTGTCGGGGTGAGAGCGGTACTGCACTCAGTGAAGGATCTG
ATCGAGGCACTTCTTGATCCATCTCGGCAAGCACGTCTCAATGGTCTCAC
AGGAATGGTTGCTTTCATCTGTTGGAGCCTCCAGAGCCATGGTGTCATAT
TTTTCTGTCGGGGTGAGAGCGGTACTGCACTCAGTGAAGGATCTGATCGA
GGCACTTCTTGATCCATCTCGGCAAGCACGTCTCAATGGTCTCACAGGAA
TGGTGTGGCAATCATGCAAGGAGCTGCAACAGGCACCGAAGACCAACAAG
CTCGCATGCCGCCGTCAGATGATGCAGGTGTGGCAATCATGCAAGGAGCT
GCAACAGGCACCGAAGACCAACAAGCTCGCATGCCGCCGTCAGATGATGC
AGTGGAGTGTTGCCGTTAAGGACACGATCGACGAATTCGCCGAGGCAGCC
AAGGCCGCCGCTCTTGCCAACGCCGGCAACCCAGGTGATCCTGGGGATAC
AACAGACCTTGACGAACAATTTGCAGCCAAGGTTACCGTGGGTGGCAAAG
AGAGCGGGGAGGACAAAGGGAAAGGATACGACGACCTCGACTTTGACGAT
ATGGACGAGGACTACAGCACGGCGGAGCTTCAGTGCGTGCAGGCGAGCAT
CGACATCCTGAGGGTGTTCCGGCGTTGCCTGAAGGTGGCGAACGAGTCTT
TTAATACGCTGGACTCAGCCCGGTCCAAGGGCGCGGAAGACGAGGCCGCC
GCTGAAGCGGTGGGAGAGGGATGGTTGAAACGGAAGTTGGAGTGGGCGAT
ATCAGTTCAGGCCCATCTGCAAGACGCGAACGAGTATGCCGGGGAGGTCG
GCGTTCTGTTGTATCCTCCCTTGGACGGCGGGGAATTGTTGGGTAGAGCG
AACGATCTGGAGAGGAGTATGATTTCTTTCTGCGATGTGTTTTACGCTTG
CGACGAGGGAGGAGATGGTGGAGGGGAATCGCCACTGCAAAAGGCTGTGG
AGGAAAAGCTAGGAGCGTTACGGGCGGCGGTAGAGGCGTTATGATGGAGT
GTTGCCGTTAAGGACACGATCGACGAATTCGCCGAGGCAGCCAAGGCCGC
CGCTCTTGCCAACGCCGGCAACCCAGGTGATCCTGGGGATACAACAGACC
TTGACGAACAATTTGCAGCCAAGGTTACCGTGGGTGGCAAAGAGAGCGGG
GAGGACAAAGGGAAAGGATACGACGACCTCGACTTTGACGATATGGACGA
GGACTACAGCACGGCGGAGCTTCAGTGCGTGCAGGCGAGCATCGACATCC
TGAGGGTGTTCCGGCGTTGCCTGAAGGTGGCGAACGAGTCTTTTAATACG
CTGGACTCAGCCCGGTCCAAGGGCGCGGAAGACGAGGCCGCCGCTGAAGC
GGTGGGAGAGGGATGGTTGAAACGGAAGTTGGAGTGGGCGATATCAGTTC
AGGCCCATCTGCAAGACGCGAACGAGTATGCCGGGGAGGTCGGCGTTCTG
TTGTATCCTCCCTTGGACGGCGGGGAATTGTTGGGTAGAGCGAACGATCT
GGAGAGGAGTATGATTTCTTTCTGCGATGTGTTTTACGCTTGCGACGAGG
GAGGAGATGGTGGAGGGGAATCGCCACTGCAAAAGGCTGTGGAGGAAAAG
CTAGGAGCGTTACGGGCGGCGGTAGAGGCGTTATGA
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