mRNA_L-elsbetiae_contig9000.18023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9000.18023.1
Unique NamemRNA_L-elsbetiae_contig9000.18023.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9000.18023.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.590e-36
Identity = 101/294 (34.35%), Postives = 149/294 (50.68%), Query Frame = 3 
Query:  276 EAVVAARADQSAERKQMARGLLQTIRDMGTRQSASHRWLAREVAGLTIRIPGHAVLLPPREDEDSELTDTEREASNWIRRLNDWRAHGKRTGKGKAWKEYRLFFLCGHDRSLAECGSGGKGYRIKCPRKWMKSSLPFAKALLVVVNMALKTTAGLGIPADDIASFGGKDWGELLSSTVEDAAEATIDAACSAVGETLDERSAVADSVDQTAPAHDSHGVGGHSNASSLLPTPREA--REQLETLVRDLSVKGLKKSSAADHPPFLCFDTTMQLVDKEGLGEEWSWVRTKNVPAF 1151
            E V+++ +D  A    +   ++  +RD    +    R + ++VA L   IP    +LP  E     L + +R    W   L +W   GKRTGKG A ++ R+FFLC +DRSLAECG GG+GY +     W K ++PFA+    + ++AL+   GL IP  D  +  G   G  LS   E++  + I++  S  GE LD     A+ + Q A AH          A    P+P +    E L+ +++   V G++  S     PF  FD  M LVD+ G GEEW+WVRTKN+  F
Sbjct:  973 ETVISSDSDHKA----LLERIVDVLRDQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLD--GGRAEGLPQGAGAH---------GAQQGWPSPVQGFTYETLKEVIKSFEVDGMRGRS-----PFPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
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BLAST of mRNA_L-elsbetiae_contig9000.18023.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.270e-27
Identity = 103/333 (30.93%), Postives = 158/333 (47.45%), Query Frame = 3 
Query:  234 DVQQIVDESSQRIV---EAVVAARADQSAERKQMARGLLQTIRDMGTRQSASHRWLAREVAGLTIRIPGHAVLLPPREDEDSELTDTEREASNWIRRLNDWRAH----------GKRTG---------KGKAWKEYRLFFLCGHDRSLAECGSGGKGYRIKCPRKWMKSSLPFAKALLVVVNMALKTTAGLGIPADDI-ASFGGKDWGELLSSTVEDAAEATIDAACSAVGETLDERSAVADSVDQTAPAHDSHGVGGHSNA-SSLLPTPREAREQLETLVRDLSVKGLKKSSAADHPPFLCFDTTMQLVDKEGLGEEWSWVRTKNVPAFTAE 1160
            DV + ++E++ ++V   E VV A    +A       GL  T RD+          +AREVA L   IP    +LP R   D+ L++++R    W   L +W A            ++T          +G   +E RLFFLCG D+SLAECG  G+GY +K    W++ + P AK  L + ++ALK   GL +  D   A+FG     E +S+ VEDA  A I+   S  G  LD        +  + P+      G   +   +L+P      ++L+ +++   V   ++    D   +  FDTTM +VD+ G G EW+WVR +N+  F  E
Sbjct:  836 DVNRKLNETTMKVVAGVEQVVQANLSNAA-----VAGLRPTERDILV-------GVAREVAILRWPIPRFVCVLPAR---DTRLSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTS---EDMSAFVEDALSAGIEGTTSKAGNRLDR-------LQNSGPSERLPHAGVRGDGMQTLIPLEGFDYDKLKEVIKSFEVDRTQR----DGSRYPSFDTTMNIVDRRGHGVEWAWVRNRNIDQFVGE 1139
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BLAST of mRNA_L-elsbetiae_contig9000.18023.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.840e-5
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 3 
Query:  567 KEYRLFFLCGHDRSLAECGSGGKGYRIKCPRKWMKSSLPFAKALLVVVNMALKTTAGLGIPADDIASFGGKDW--GELLSSTVED 815
            K+  L FLC  D +   CG GGKGYR +  R W+K   P  +  LV   +ALK T+GL +   D      KD   GEL+  T+++
Sbjct: 1356 KDMTLHFLCPVDMTKVPCGYGGKGYRFRETRGWVKKISPVLQVALVTAKVALKATSGLDVDLSDFLKDV-KDGLVGELVDPTLDE 1439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9000.18023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU35_ECTSI5.590e-3634.35LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI6.270e-2730.93LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LCS7_ECTSI2.840e-538.82LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9000contigL-elsbetiae_contig9000:204..2461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue4.8e-35
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1534
Cds size1185
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9000.18023.1prot_L-elsbetiae_contig9000.18023.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9000 209..2117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.370354-UTR-L-elsbetiae_contig9000:203..2081622816976.370354-UTR-L-elsbetiae_contig9000:203..208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9000 204..208 +
1691683954.9808311-UTR-L-elsbetiae_contig9000:203..2081691683954.9808311-UTR-L-elsbetiae_contig9000:203..208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9000 204..208 +
1622816976.4274347-UTR-L-elsbetiae_contig9000:2117..24611622816976.4274347-UTR-L-elsbetiae_contig9000:2117..2461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9000 2118..2461 +
1691683955.02852-UTR-L-elsbetiae_contig9000:2117..24611691683955.02852-UTR-L-elsbetiae_contig9000:2117..2461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9000 2118..2461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.3828354-CDS-L-elsbetiae_contig9000:208..2861622816976.3828354-CDS-L-elsbetiae_contig9000:208..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 209..286 +
1691683954.994219-CDS-L-elsbetiae_contig9000:208..2861691683954.994219-CDS-L-elsbetiae_contig9000:208..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 209..286 +
1622816976.394418-CDS-L-elsbetiae_contig9000:637..15011622816976.394418-CDS-L-elsbetiae_contig9000:637..1501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 638..1501 +
1691683955.0057638-CDS-L-elsbetiae_contig9000:637..15011691683955.0057638-CDS-L-elsbetiae_contig9000:637..1501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 638..1501 +
1622816976.410489-CDS-L-elsbetiae_contig9000:1874..21171622816976.410489-CDS-L-elsbetiae_contig9000:1874..2117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 1875..2117 +
1691683955.017387-CDS-L-elsbetiae_contig9000:1874..21171691683955.017387-CDS-L-elsbetiae_contig9000:1874..2117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9000 1875..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9000.18023.1

>prot_L-elsbetiae_contig9000.18023.1 ID=prot_L-elsbetiae_contig9000.18023.1|Name=mRNA_L-elsbetiae_contig9000.18023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
MMFQRITSRISANLSTGGTPNTISPEVQGRSTDDQVAQQLKEISRSITSA
VGRPVPDQELKAWTANLRNLRLRTREDVQQIVDESSQRIVEAVVAARADQ
SAERKQMARGLLQTIRDMGTRQSASHRWLAREVAGLTIRIPGHAVLLPPR
EDEDSELTDTEREASNWIRRLNDWRAHGKRTGKGKAWKEYRLFFLCGHDR
SLAECGSGGKGYRIKCPRKWMKSSLPFAKALLVVVNMALKTTAGLGIPAD
DIASFGGKDWGELLSSTVEDAAEATIDAACSAVGETLDERSAVADSVDQT
APAHDSHGVGGHSNASSLLPTPREAREQLETLVRDLSVKGLKKSSAADHP
PFLCFDTTMQLVDKEGLGEEWSWVRTKNVPAFTAEASGGGGQPL*
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mRNA from alignment at L-elsbetiae_contig9000:204..2461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9000.18023.1 ID=mRNA_L-elsbetiae_contig9000.18023.1|Name=mRNA_L-elsbetiae_contig9000.18023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2258bp|location=Sequence derived from alignment at L-elsbetiae_contig9000:204..2461+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATATGATGTTTCAACGGATAACGAGCCGTATTTCAGCGAACCTCAGC
ACCGGCGGAACTCCCAATACCATTTCTCCAGAGGTGAGAGTTACCGCTTT
TCGCTGATATTTATGTAGTTGAAATGCCAGGCGCACTAAATAGACGAAAC
GACTCGGAAACCCATGAGCGAAAATCGTCCTCTTCGTTGACGATGGCGAA
AGTAGTTTCCAATACGGTGCGCGTGGCCGCCAGTGCTCGCATTTGGGCCA
TCGCTCAAAAAGGCGCATCACCACGGGGTTGCTTTGCTATTTCTTCACAT
GCGCACGTGCGTGGGTGGGATTACTATTTAATGTTGTCTAGACATTTGTT
TTCTGTGGAAGTCCTACTGCACCTTACACAGTCCCTCCTTGCACGTTTGC
TGTCGACTTTCTCGTGCTATTTATGGGTCAGCAGGTACAAGGTCGATCAA
CTGACGACCAGGTTGCTCAGCAGCTGAAAGAAATATCGCGCAGCATAACC
TCAGCTGTGGGTCGCCCCGTTCCTGACCAAGAGCTCAAGGCCTGGACAGC
AAACCTGCGCAACCTCCGTTTACGTACACGAGAGGACGTGCAGCAGATAG
TCGACGAGTCCAGTCAGAGGATTGTTGAGGCTGTGGTCGCCGCAAGAGCA
GATCAGTCGGCCGAAAGGAAACAGATGGCGAGGGGCCTGCTGCAGACCAT
AAGAGATATGGGAACCCGTCAGTCGGCCAGCCACAGATGGCTAGCAAGGG
AGGTAGCCGGTCTGACCATTCGCATTCCAGGCCATGCGGTGCTGCTACCC
CCGCGCGAGGATGAGGATTCAGAGTTGACGGACACGGAGAGGGAGGCATC
GAACTGGATCCGGAGATTGAACGACTGGCGTGCCCATGGGAAAAGGACGG
GCAAAGGCAAGGCATGGAAGGAATATAGGCTGTTCTTCCTCTGTGGGCAC
GACCGCAGCTTGGCGGAATGCGGATCCGGGGGAAAGGGCTACCGAATTAA
ATGCCCGAGGAAGTGGATGAAAAGCAGCCTCCCATTCGCGAAAGCCCTCC
TGGTCGTCGTCAACATGGCCTTGAAGACAACCGCTGGGTTGGGCATCCCC
GCTGATGATATCGCGTCTTTTGGCGGGAAAGACTGGGGCGAACTATTGTC
GTCTACGGTGGAGGATGCAGCGGAAGCCACCATAGACGCCGCATGTTCTG
CGGTGGGGGAGACGCTAGACGAAAGGAGCGCAGTTGCGGACAGTGTGGAC
CAGACAGCACCTGCACACGACAGTCACGGCGTTGGAGGTCACTCGAACGT
GAGCACAAAGCTTGTTTACTTGGCGCAGGGAAACGCGTTTTGAAACGTCG
TCGTTGCAGCAAGCTGCCGAGAATGCTTCAGCCTCGTGAGGACTCCATCC
CTTCAATACCTGCCACGTTAAATGTATAGCCTAATTTCTGGAAGCCATTG
CTACATCCTTCATGATGGGGGAACACACGACATAGCCCGAAAACCAAGTT
TCACAAACCCGGTATTCGTACTCCGATACGAGTCTCGTGTGCGCACCCTT
AAGCGCCACAACACTATTTCATCACACTAGTAGAGTTCGCCTCAAAACAC
TGCTATTGCGGTTGTCTGAAACGTTTTTTTCTGGCTCTTCCGCCATCCTT
CGTTTCTCTAATGACAAGCAGGCCAGCAGCCTGCTGCCGACACCGAGGGA
GGCGAGGGAACAGCTGGAAACGTTGGTACGCGACCTCAGCGTTAAAGGGC
TCAAGAAGAGCAGTGCTGCGGACCATCCGCCATTTCTCTGCTTTGATACC
ACAATGCAGCTGGTGGACAAGGAGGGGCTAGGAGAGGAGTGGTCATGGGT
GAGAACGAAAAACGTTCCAGCCTTTACTGCTGAGGCTTCTGGAGGAGGAG
GGCAGCCTCTCTAAGCATCGGCATTGCATGGATGGTTCTGGGGTGGCTAT
GTACGGTTTTGAAAACAGGGCCGTGCCAAGCCAGCTTTCCCATCTCAGAC
CCTGCTCTCTCTTGTACCTGCTGAAGAGAGATCATCTCAGAAATTGAGAC
GCGCGGCGTAAGAGGACGTTCTCTTAAACCGGAAGACAACTTGGTTTCGT
TTGGTTTCATGCCGGCGCATCAAGGTTCCATGCTCTGACTAGTGGAGTCA
CTGAGGAAATGTTGTCACTATGTAGTTGTCACGTCTTTTATGCCGGGAAA
AGAAGTAAATGTGTCATAAGTTGTGCACTGGATAGTAAATGATCAGGTAT
CAGCATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9000:204..2461+

>mRNA_L-elsbetiae_contig9000.18023.1 ID=mRNA_L-elsbetiae_contig9000.18023.1|Name=mRNA_L-elsbetiae_contig9000.18023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig9000:204..2461+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTTTCAACGGATAACGAGCCGTATTTCAGCGAACCTCAGCACCGG
CGGAACTCCCAATACCATTTCTCCAGAGATGATGTTTCAACGGATAACGA
GCCGTATTTCAGCGAACCTCAGCACCGGCGGAACTCCCAATACCATTTCT
CCAGAGGTACAAGGTCGATCAACTGACGACCAGGTTGCTCAGCAGCTGAA
AGAAATATCGCGCAGCATAACCTCAGCTGTGGGTCGCCCCGTTCCTGACC
AAGAGCTCAAGGCCTGGACAGCAAACCTGCGCAACCTCCGTTTACGTACA
CGAGAGGACGTGCAGCAGATAGTCGACGAGTCCAGTCAGAGGATTGTTGA
GGCTGTGGTCGCCGCAAGAGCAGATCAGTCGGCCGAAAGGAAACAGATGG
CGAGGGGCCTGCTGCAGACCATAAGAGATATGGGAACCCGTCAGTCGGCC
AGCCACAGATGGCTAGCAAGGGAGGTAGCCGGTCTGACCATTCGCATTCC
AGGCCATGCGGTGCTGCTACCCCCGCGCGAGGATGAGGATTCAGAGTTGA
CGGACACGGAGAGGGAGGCATCGAACTGGATCCGGAGATTGAACGACTGG
CGTGCCCATGGGAAAAGGACGGGCAAAGGCAAGGCATGGAAGGAATATAG
GCTGTTCTTCCTCTGTGGGCACGACCGCAGCTTGGCGGAATGCGGATCCG
GGGGAAAGGGCTACCGAATTAAATGCCCGAGGAAGTGGATGAAAAGCAGC
CTCCCATTCGCGAAAGCCCTCCTGGTCGTCGTCAACATGGCCTTGAAGAC
AACCGCTGGGTTGGGCATCCCCGCTGATGATATCGCGTCTTTTGGCGGGA
AAGACTGGGGCGAACTATTGTCGTCTACGGTGGAGGATGCAGCGGAAGCC
ACCATAGACGCCGCATGTTCTGCGGTGGGGGAGACGCTAGACGAAAGGAG
CGCAGTTGCGGACAGTGTGGACCAGACAGCACCTGCACACGACAGTCACG
GCGTTGGAGGTCACTCGAACGTACAAGGTCGATCAACTGACGACCAGGTT
GCTCAGCAGCTGAAAGAAATATCGCGCAGCATAACCTCAGCTGTGGGTCG
CCCCGTTCCTGACCAAGAGCTCAAGGCCTGGACAGCAAACCTGCGCAACC
TCCGTTTACGTACACGAGAGGACGTGCAGCAGATAGTCGACGAGTCCAGT
CAGAGGATTGTTGAGGCTGTGGTCGCCGCAAGAGCAGATCAGTCGGCCGA
AAGGAAACAGATGGCGAGGGGCCTGCTGCAGACCATAAGAGATATGGGAA
CCCGTCAGTCGGCCAGCCACAGATGGCTAGCAAGGGAGGTAGCCGGTCTG
ACCATTCGCATTCCAGGCCATGCGGTGCTGCTACCCCCGCGCGAGGATGA
GGATTCAGAGTTGACGGACACGGAGAGGGAGGCATCGAACTGGATCCGGA
GATTGAACGACTGGCGTGCCCATGGGAAAAGGACGGGCAAAGGCAAGGCA
TGGAAGGAATATAGGCTGTTCTTCCTCTGTGGGCACGACCGCAGCTTGGC
GGAATGCGGATCCGGGGGAAAGGGCTACCGAATTAAATGCCCGAGGAAGT
GGATGAAAAGCAGCCTCCCATTCGCGAAAGCCCTCCTGGTCGTCGTCAAC
ATGGCCTTGAAGACAACCGCTGGGTTGGGCATCCCCGCTGATGATATCGC
GTCTTTTGGCGGGAAAGACTGGGGCGAACTATTGTCGTCTACGGTGGAGG
ATGCAGCGGAAGCCACCATAGACGCCGCATGTTCTGCGGTGGGGGAGACG
CTAGACGAAAGGAGCGCAGTTGCGGACAGTGTGGACCAGACAGCACCTGC
ACACGACAGTCACGGCGTTGGAGGTCACTCGAACGCCAGCAGCCTGCTGC
CGACACCGAGGGAGGCGAGGGAACAGCTGGAAACGTTGGTACGCGACCTC
AGCGTTAAAGGGCTCAAGAAGAGCAGTGCTGCGGACCATCCGCCATTTCT
CTGCTTTGATACCACAATGCAGCTGGTGGACAAGGAGGGGCTAGGAGAGG
AGTGGTCATGGGTGAGAACGAAAAACGTTCCAGCCTTTACTGCTGAGGCT
TCTGGAGGAGGAGGGCAGCCTCTCTAAGCCAGCAGCCTGCTGCCGACACC
GAGGGAGGCGAGGGAACAGCTGGAAACGTTGGTACGCGACCTCAGCGTTA
AAGGGCTCAAGAAGAGCAGTGCTGCGGACCATCCGCCATTTCTCTGCTTT
GATACCACAATGCAGCTGGTGGACAAGGAGGGGCTAGGAGAGGAGTGGTC
ATGGGTGAGAACGAAAAACGTTCCAGCCTTTACTGCTGAGGCTTCTGGAG
GAGGAGGGCAGCCTCTCTAA
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