mRNA_L-elsbetiae_contig900.18020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig900.18020.1
Unique NamemRNA_L-elsbetiae_contig900.18020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig900.18020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig900contigL-elsbetiae_contig900:16021..19511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3028
Cds size1977
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig900.18020.1prot_L-elsbetiae_contig900.18020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig900 16257..18431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.0826383-UTR-L-elsbetiae_contig900:16020..161161622816976.0826383-UTR-L-elsbetiae_contig900:16020..16116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 16021..16116 +
1691683954.8052309-UTR-L-elsbetiae_contig900:16020..161161691683954.8052309-UTR-L-elsbetiae_contig900:16020..16116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 16021..16116 +
1622816976.0942154-UTR-L-elsbetiae_contig900:16249..162561622816976.0942154-UTR-L-elsbetiae_contig900:16249..16256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 16250..16256 +
1691683954.8146868-UTR-L-elsbetiae_contig900:16249..162561691683954.8146868-UTR-L-elsbetiae_contig900:16249..16256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 16250..16256 +
1622816976.1282823-UTR-L-elsbetiae_contig900:18431..184321622816976.1282823-UTR-L-elsbetiae_contig900:18431..18432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 18432..18432 +
1691683954.8518822-UTR-L-elsbetiae_contig900:18431..184321691683954.8518822-UTR-L-elsbetiae_contig900:18431..18432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 18432..18432 +
1622816976.141011-UTR-L-elsbetiae_contig900:18564..195111622816976.141011-UTR-L-elsbetiae_contig900:18564..19511Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 18565..19511 +
1691683954.8655064-UTR-L-elsbetiae_contig900:18564..195111691683954.8655064-UTR-L-elsbetiae_contig900:18564..19511Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 18565..19511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.1042032-CDS-L-elsbetiae_contig900:16256..163931622816976.1042032-CDS-L-elsbetiae_contig900:16256..16393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 16257..16393 +
1691683954.8254628-CDS-L-elsbetiae_contig900:16256..163931691683954.8254628-CDS-L-elsbetiae_contig900:16256..16393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 16257..16393 +
1622816976.116464-CDS-L-elsbetiae_contig900:16591..184311622816976.116464-CDS-L-elsbetiae_contig900:16591..18431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 16592..18431 +
1691683954.8375301-CDS-L-elsbetiae_contig900:16591..184311691683954.8375301-CDS-L-elsbetiae_contig900:16591..18431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 16592..18431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig900.18020.1

>prot_L-elsbetiae_contig900.18020.1 ID=prot_L-elsbetiae_contig900.18020.1|Name=mRNA_L-elsbetiae_contig900.18020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=659bp
MADPFKLVDRLEEIDFLTETQKELLGDRAMDGEDITPVLRAWTRVGGAIT
HRQFDRFVNKYLGLPQPEQQQPRPQPPQVQDAQAGSASIPLHVGSESDFG
GGGDGAGGGGEGWSDSAGGDDGKFEVTDDWVMKNTGGKCLCSLRSWVVAD
ETKRMVTLSDAHAIPLEEYPGFKVHWFVQSTPALMDLKVQGQASLANIAT
PRLPKGVTWPTTRKHYTRRNKVAIALGPAGKIMVVTSTIDDLRNPVDGCG
GTLPGGFTGENWAEMARLTLKYHFGQRKVLQTWSDLHRIDGATTPWGKRA
ALIAKGRKRKAAPATESSGDIRDVAATAEPGDLQRDAVIWSAGIHGFCSK
KQWTSSPWETALRGGNGIYATLVFPTVEQFKNPTPMDLPPAACNLEDKDV
DTAVKSYNLGFRLMEKDGKMHRATDSTIWTTMRADGIHTKYAESLENSIG
RSRRHAKSTSRVNSMSIKYKNCDTVSEDDVTAAMYLSVLLEKLGRLGEVT
KGDCARDGGGRGNRKKAAAASVSDTPTGKGKGRRVSGSGGGEEEEEAYGA
GSSFEFPGSDGEYGDAAKDDCARDGGGNEEKVESPGSGGESGDAGRASMG
VGSCSGAGSGSDGETNKETQEPTGIALELFTGQRPTGRGPQRNDDPPQMG
SVDNVENN*
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mRNA from alignment at L-elsbetiae_contig900:16021..19511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig900.18020.1 ID=mRNA_L-elsbetiae_contig900.18020.1|Name=mRNA_L-elsbetiae_contig900.18020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3491bp|location=Sequence derived from alignment at L-elsbetiae_contig900:16021..19511+ (Laminarionema elsbetiae ELsaHSoW15)
TACACCGTTCTCGCAGACACCGTCCTCCAAGGCTCTGGACGCAATTCGTA
GGCTCGGGGCTTCGGGCGGGGATACGGGCCTGCGCGAGACAGAAAGGTAA
GTTCACAAGTAAGAACGTTGTCGCTGCAGAGGATCTTTGTTTTGCCGCCA
TGTTGTGTCGCTGCACCCGCCGATCACCCACGCTGCCCAGCTTTTTCACA
CAGCACCCGCACATACGAACTGAAACCAGATCTACCATGGCCGACCCCTT
CAAGCTGGTCGACAGGTTGGAGGAAATTGACTTCTTGACCGAGACGCAGA
AAGAATTGTTGGGCGACCGGGCGATGGACGGGGAGGATATCACCCCTGTG
TTGAGGGCGTGGACGCGTGTCGGGTGAGGGATCGATATGTGTGTGTGGTG
AAATTGCTTGCTTGGAGCCGTTTGCTTTCACAACATTCAGTAGACGACAC
CTTGATGCACCGACACGCCGTCGCACGTTATATGCTGAAAACGGTGTAAC
TTCCTTGCAACATTCGCACTGACTGAATTTGCCACGAACCACCGACGCAT
TCGTCCGTCATATCTTGACAGGGGTGCAATAACACACCGACAGTTCGATC
GGTTTGTCAACAAGTACCTGGGGCTGCCGCAGCCTGAGCAACAACAGCCG
CGGCCCCAGCCGCCGCAGGTTCAGGACGCACAGGCCGGCAGCGCGAGCAT
CCCTCTGCATGTTGGTAGCGAGAGCGACTTCGGCGGTGGTGGCGACGGAG
CCGGAGGTGGTGGGGAAGGATGGTCGGATTCTGCAGGGGGCGATGACGGC
AAATTCGAGGTCACGGACGACTGGGTAATGAAGAACACCGGGGGCAAGTG
CCTGTGCAGTCTCAGATCGTGGGTGGTAGCAGATGAAACCAAGCGGATGG
TCACACTCAGCGACGCGCACGCGATTCCTCTCGAAGAGTATCCCGGATTC
AAGGTGCACTGGTTCGTCCAATCGACACCCGCACTAATGGATCTAAAGGT
ACAGGGACAAGCTTCCCTGGCGAACATCGCGACCCCGCGGCTACCGAAAG
GTGTGACCTGGCCAACCACCCGAAAACACTACACCCGCCGGAATAAGGTG
GCCATAGCCCTGGGGCCCGCGGGCAAGATCATGGTGGTAACCTCTACCAT
CGATGACCTCCGCAACCCTGTCGATGGATGTGGCGGGACGTTACCGGGAG
GGTTCACGGGTGAGAACTGGGCAGAGATGGCCCGCCTGACGCTCAAGTAC
CACTTCGGGCAACGCAAAGTTCTCCAAACATGGTCGGATCTGCACCGGAT
CGACGGAGCCACGACACCGTGGGGCAAAAGGGCTGCTTTAATCGCGAAGG
GACGCAAGCGCAAGGCAGCACCAGCCACGGAGAGCAGCGGAGACATCCGT
GACGTGGCGGCGACGGCGGAACCCGGTGACCTTCAGAGAGATGCGGTCAT
TTGGTCAGCCGGCATACACGGGTTCTGCAGCAAGAAGCAGTGGACATCCA
GCCCGTGGGAGACAGCCTTGCGTGGAGGCAACGGCATATACGCGACGCTC
GTGTTCCCTACCGTCGAGCAATTCAAGAACCCAACGCCCATGGACCTTCC
TCCCGCAGCCTGCAACCTCGAAGACAAAGACGTCGACACTGCGGTCAAAA
GCTACAACCTTGGCTTCAGGCTGATGGAGAAAGACGGGAAGATGCATCGC
GCCACGGATTCGACAATCTGGACCACCATGAGGGCCGACGGTATCCACAC
CAAATACGCTGAATCTCTGGAGAATTCCATCGGCAGGTCCCGCAGGCACG
CCAAGTCGACATCTCGCGTCAACTCCATGTCGATCAAGTACAAGAACTGC
GACACGGTGTCCGAAGACGACGTTACCGCCGCGATGTACCTGAGCGTGCT
TCTGGAGAAGCTAGGGCGTCTAGGCGAGGTGACGAAGGGTGACTGCGCGC
GTGACGGTGGCGGGAGAGGTAACCGGAAGAAGGCAGCGGCTGCAAGCGTC
AGCGACACACCGACCGGGAAGGGCAAAGGGCGTCGCGTGAGCGGCTCGGG
GGGTGGCGAAGAGGAGGAGGAGGCCTACGGCGCCGGGTCATCGTTCGAAT
TCCCCGGCTCTGATGGAGAGTACGGGGACGCTGCGAAGGATGACTGCGCG
CGTGACGGTGGCGGGAACGAAGAGAAGGTCGAATCCCCCGGCTCTGGTGG
AGAGTCCGGGGACGCTGGGCGGGCTTCAATGGGTGTGGGGTCGTGTAGCG
GGGCCGGGTCGGGCAGCGACGGTGAAACCAACAAAGAGACGCAGGAACCG
ACTGGGATCGCCTTGGAACTCTTTACGGGACAGAGGCCCACGGGGCGGGG
GCCGCAGCGTAACGATGACCCGCCGCAGATGGGTTCGGTGGACAACGTCG
AAAACAATTGAGGTGCGTGCTAACAGTGTTTTTGGCTTTTTTTTGGCGCT
TTCGATTGCACGTTTTTTGTTCGGCGTGTTTCAATTGTTTGCTCTGATGA
CGCCCGCTTATGTTCGCCCTGTTTGCTTTGTGTACGTTCGCAAGGTGGTG
ATTTTTCGAGGTCCCGCATTCGACGGAGAACGTGGGCGGGCGACGAGACA
CAGTTGTATTATTGCCTGCATAGGACAACACACAGGCTTACTTTTTGTTT
CGGCTTTGGGTTTTTGTGTTGCCTGGTTTTGAGTTGTCTGCCGTGCAATG
TTTCCACGTACGGGAATAATAGCGAGACACGCGAACGTTTGGCAACGGGG
ATGGGACTATTGTAGGGGATCGGACGATCGTAGCGTACTGTAGGGCGTGA
GCCGAAAATGACGGCCTCGTCCCGTTGAAATGTTTTCAGTAATATTGCTG
ACGAAGACTCATGCCGCCTGCCGGAACGCACGCACGCGGTAGTAGCAATG
TAGAGTGGTAGGTTCTGCAACCTATGAGGCCGTGCGTACGAGACGGTTTG
ACCAAGATGTCCCACTTCAAAATTTAATATAGGTTAAATGACAATAACCA
TGTCGTTTTGGAGAGATTTGTCTAAATCCGGAGGTACGCCAGTACTGAAC
GAAACCGTTTCCGACATCTTGAGGGGCAGTGGTGTACCATGGAACGGAGC
CGTCGAGTCCTTGACCCACATATATGGCATGCTGGCTGTTTTTTGCGAAG
CATCTGACGATCGGAAGATAAATTATCTTTAGATATGGATCGATCGAAGA
TGCCTACAACCGGCAAAAGTACACGCCGTCGTCTTCGGCTAATTTGGATG
GTATTGATGACTCCGATTTATTGGCAGATGGACCCTGGGGGGGTGCACCT
CCTCCACAGTCGACACCGTATCAGCCAAACGCGCCGAATGTTGGTGAAAA
TGTTGGTGAAAATACTGATTATTTATTGGCACGGACAACAGTTCCGTATC
AGTCGGATGCCGCACGCGGGGCCGAAGCAGAGGCCAGACGCGCATACGAG
AGCTGGGGAGGTGCACCTCTACAATCGACACTGTATCAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig900:16021..19511+

>mRNA_L-elsbetiae_contig900.18020.1 ID=mRNA_L-elsbetiae_contig900.18020.1|Name=mRNA_L-elsbetiae_contig900.18020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3954bp|location=Sequence derived from alignment at L-elsbetiae_contig900:16021..19511+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGACCCCTTCAAGCTGGTCGACAGGTTGGAGGAAATTGACTTCTT
GACCGAGACGCAGAAAGAATTGTTGGGCGACCGGGCGATGGACGGGGAGG
ATATCACCCCTGTGTTGAGGGCGTGGACGCGTGTCGGATGGCCGACCCCT
TCAAGCTGGTCGACAGGTTGGAGGAAATTGACTTCTTGACCGAGACGCAG
AAAGAATTGTTGGGCGACCGGGCGATGGACGGGGAGGATATCACCCCTGT
GTTGAGGGCGTGGACGCGTGTCGGGGGTGCAATAACACACCGACAGTTCG
ATCGGTTTGTCAACAAGTACCTGGGGCTGCCGCAGCCTGAGCAACAACAG
CCGCGGCCCCAGCCGCCGCAGGTTCAGGACGCACAGGCCGGCAGCGCGAG
CATCCCTCTGCATGTTGGTAGCGAGAGCGACTTCGGCGGTGGTGGCGACG
GAGCCGGAGGTGGTGGGGAAGGATGGTCGGATTCTGCAGGGGGCGATGAC
GGCAAATTCGAGGTCACGGACGACTGGGTAATGAAGAACACCGGGGGCAA
GTGCCTGTGCAGTCTCAGATCGTGGGTGGTAGCAGATGAAACCAAGCGGA
TGGTCACACTCAGCGACGCGCACGCGATTCCTCTCGAAGAGTATCCCGGA
TTCAAGGTGCACTGGTTCGTCCAATCGACACCCGCACTAATGGATCTAAA
GGTACAGGGACAAGCTTCCCTGGCGAACATCGCGACCCCGCGGCTACCGA
AAGGTGTGACCTGGCCAACCACCCGAAAACACTACACCCGCCGGAATAAG
GTGGCCATAGCCCTGGGGCCCGCGGGCAAGATCATGGTGGTAACCTCTAC
CATCGATGACCTCCGCAACCCTGTCGATGGATGTGGCGGGACGTTACCGG
GAGGGTTCACGGGTGAGAACTGGGCAGAGATGGCCCGCCTGACGCTCAAG
TACCACTTCGGGCAACGCAAAGTTCTCCAAACATGGTCGGATCTGCACCG
GATCGACGGAGCCACGACACCGTGGGGCAAAAGGGCTGCTTTAATCGCGA
AGGGACGCAAGCGCAAGGCAGCACCAGCCACGGAGAGCAGCGGAGACATC
CGTGACGTGGCGGCGACGGCGGAACCCGGTGACCTTCAGAGAGATGCGGT
CATTTGGTCAGCCGGCATACACGGGTTCTGCAGCAAGAAGCAGTGGACAT
CCAGCCCGTGGGAGACAGCCTTGCGTGGAGGCAACGGCATATACGCGACG
CTCGTGTTCCCTACCGTCGAGCAATTCAAGAACCCAACGCCCATGGACCT
TCCTCCCGCAGCCTGCAACCTCGAAGACAAAGACGTCGACACTGCGGTCA
AAAGCTACAACCTTGGCTTCAGGCTGATGGAGAAAGACGGGAAGATGCAT
CGCGCCACGGATTCGACAATCTGGACCACCATGAGGGCCGACGGTATCCA
CACCAAATACGCTGAATCTCTGGAGAATTCCATCGGCAGGTCCCGCAGGC
ACGCCAAGTCGACATCTCGCGTCAACTCCATGTCGATCAAGTACAAGAAC
TGCGACACGGTGTCCGAAGACGACGTTACCGCCGCGATGTACCTGAGCGT
GCTTCTGGAGAAGCTAGGGCGTCTAGGCGAGGTGACGAAGGGTGACTGCG
CGCGTGACGGTGGCGGGAGAGGTAACCGGAAGAAGGCAGCGGCTGCAAGC
GTCAGCGACACACCGACCGGGAAGGGCAAAGGGCGTCGCGTGAGCGGCTC
GGGGGGTGGCGAAGAGGAGGAGGAGGCCTACGGCGCCGGGTCATCGTTCG
AATTCCCCGGCTCTGATGGAGAGTACGGGGACGCTGCGAAGGATGACTGC
GCGCGTGACGGTGGCGGGAACGAAGAGAAGGTCGAATCCCCCGGCTCTGG
TGGAGAGTCCGGGGACGCTGGGCGGGCTTCAATGGGTGTGGGGTCGTGTA
GCGGGGCCGGGTCGGGCAGCGACGGTGAAACCAACAAAGAGACGCAGGAA
CCGACTGGGATCGCCTTGGAACTCTTTACGGGACAGAGGCCCACGGGGCG
GGGGCCGCAGCGTAACGATGACCCGCCGCAGATGGGTTCGGTGGACAACG
TCGAAAACAATTGAGGGTGCAATAACACACCGACAGTTCGATCGGTTTGT
CAACAAGTACCTGGGGCTGCCGCAGCCTGAGCAACAACAGCCGCGGCCCC
AGCCGCCGCAGGTTCAGGACGCACAGGCCGGCAGCGCGAGCATCCCTCTG
CATGTTGGTAGCGAGAGCGACTTCGGCGGTGGTGGCGACGGAGCCGGAGG
TGGTGGGGAAGGATGGTCGGATTCTGCAGGGGGCGATGACGGCAAATTCG
AGGTCACGGACGACTGGGTAATGAAGAACACCGGGGGCAAGTGCCTGTGC
AGTCTCAGATCGTGGGTGGTAGCAGATGAAACCAAGCGGATGGTCACACT
CAGCGACGCGCACGCGATTCCTCTCGAAGAGTATCCCGGATTCAAGGTGC
ACTGGTTCGTCCAATCGACACCCGCACTAATGGATCTAAAGGTACAGGGA
CAAGCTTCCCTGGCGAACATCGCGACCCCGCGGCTACCGAAAGGTGTGAC
CTGGCCAACCACCCGAAAACACTACACCCGCCGGAATAAGGTGGCCATAG
CCCTGGGGCCCGCGGGCAAGATCATGGTGGTAACCTCTACCATCGATGAC
CTCCGCAACCCTGTCGATGGATGTGGCGGGACGTTACCGGGAGGGTTCAC
GGGTGAGAACTGGGCAGAGATGGCCCGCCTGACGCTCAAGTACCACTTCG
GGCAACGCAAAGTTCTCCAAACATGGTCGGATCTGCACCGGATCGACGGA
GCCACGACACCGTGGGGCAAAAGGGCTGCTTTAATCGCGAAGGGACGCAA
GCGCAAGGCAGCACCAGCCACGGAGAGCAGCGGAGACATCCGTGACGTGG
CGGCGACGGCGGAACCCGGTGACCTTCAGAGAGATGCGGTCATTTGGTCA
GCCGGCATACACGGGTTCTGCAGCAAGAAGCAGTGGACATCCAGCCCGTG
GGAGACAGCCTTGCGTGGAGGCAACGGCATATACGCGACGCTCGTGTTCC
CTACCGTCGAGCAATTCAAGAACCCAACGCCCATGGACCTTCCTCCCGCA
GCCTGCAACCTCGAAGACAAAGACGTCGACACTGCGGTCAAAAGCTACAA
CCTTGGCTTCAGGCTGATGGAGAAAGACGGGAAGATGCATCGCGCCACGG
ATTCGACAATCTGGACCACCATGAGGGCCGACGGTATCCACACCAAATAC
GCTGAATCTCTGGAGAATTCCATCGGCAGGTCCCGCAGGCACGCCAAGTC
GACATCTCGCGTCAACTCCATGTCGATCAAGTACAAGAACTGCGACACGG
TGTCCGAAGACGACGTTACCGCCGCGATGTACCTGAGCGTGCTTCTGGAG
AAGCTAGGGCGTCTAGGCGAGGTGACGAAGGGTGACTGCGCGCGTGACGG
TGGCGGGAGAGGTAACCGGAAGAAGGCAGCGGCTGCAAGCGTCAGCGACA
CACCGACCGGGAAGGGCAAAGGGCGTCGCGTGAGCGGCTCGGGGGGTGGC
GAAGAGGAGGAGGAGGCCTACGGCGCCGGGTCATCGTTCGAATTCCCCGG
CTCTGATGGAGAGTACGGGGACGCTGCGAAGGATGACTGCGCGCGTGACG
GTGGCGGGAACGAAGAGAAGGTCGAATCCCCCGGCTCTGGTGGAGAGTCC
GGGGACGCTGGGCGGGCTTCAATGGGTGTGGGGTCGTGTAGCGGGGCCGG
GTCGGGCAGCGACGGTGAAACCAACAAAGAGACGCAGGAACCGACTGGGA
TCGCCTTGGAACTCTTTACGGGACAGAGGCCCACGGGGCGGGGGCCGCAG
CGTAACGATGACCCGCCGCAGATGGGTTCGGTGGACAACGTCGAAAACAA
TTGA
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