mRNA_L-elsbetiae_contig900.18019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig900.18019.1
Unique NamemRNA_L-elsbetiae_contig900.18019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig900.18019.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC)

HSP 1 Score: 93.6 bits (231), Expect = 4.760e-19
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1 
Query:  721 VSLEHLSVVACGSIIHNDKNQVGLGSTQSNSTFVYDAPGQTTTEVSRNDVVLNPSGDSASVTLGTPVTAGGGQSMKEVIKSSPTSTVISSLQGTSVSNLSIDGSISWDRDESCLYLSANKAFRFKYIESDGVSPSMLVLEGLNATTL--EYMPKVEFSSD 1194
            V    L  ++CG ++H +   V +G    +S F YD       EVSR+DV+++ S  S SV+  + V +        +I +S  S V SS      + L++DG ISWD   +CLYLSA+K FRF++ ESDGV+PS L+LE L +      Y+PK EF+S+
Sbjct:   12 VDTSSLGCMSCGDVVHGEV--VNIGDLVCSS-FSYDEESGEAREVSRDDVIVDSS--SGSVSFRSSVRSKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig900.18019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWH5_9PHYC4.760e-1938.75Uncharacterized protein n=1 Tax=Feldmannia species... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig900contigL-elsbetiae_contig900:7312..9036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1197
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig900.18019.1prot_L-elsbetiae_contig900.18019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig900 7312..7821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.1759775-CDS-L-elsbetiae_contig900:7311..78211622816976.1759775-CDS-L-elsbetiae_contig900:7311..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 7312..7821 -
1691683954.8765724-CDS-L-elsbetiae_contig900:7311..78211691683954.8765724-CDS-L-elsbetiae_contig900:7311..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig900 7312..7821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.1893349-UTR-L-elsbetiae_contig900:7821..81131622816976.1893349-UTR-L-elsbetiae_contig900:7821..8113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 7822..8113 -
1691683954.8882475-UTR-L-elsbetiae_contig900:7821..81131691683954.8882475-UTR-L-elsbetiae_contig900:7821..8113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 7822..8113 -
1622816976.202454-UTR-L-elsbetiae_contig900:8228..83731622816976.202454-UTR-L-elsbetiae_contig900:8228..8373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8229..8373 -
1691683954.9008482-UTR-L-elsbetiae_contig900:8228..83731691683954.9008482-UTR-L-elsbetiae_contig900:8228..8373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8229..8373 -
1622816976.245288-UTR-L-elsbetiae_contig900:8493..85911622816976.245288-UTR-L-elsbetiae_contig900:8493..8591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8494..8591 -
1691683954.9137352-UTR-L-elsbetiae_contig900:8493..85911691683954.9137352-UTR-L-elsbetiae_contig900:8493..8591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8494..8591 -
1622816976.2576678-UTR-L-elsbetiae_contig900:8884..90361622816976.2576678-UTR-L-elsbetiae_contig900:8884..9036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8885..9036 -
1691683954.9274652-UTR-L-elsbetiae_contig900:8884..90361691683954.9274652-UTR-L-elsbetiae_contig900:8884..9036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig900 8885..9036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig900.18019.1

>prot_L-elsbetiae_contig900.18019.1 ID=prot_L-elsbetiae_contig900.18019.1|Name=mRNA_L-elsbetiae_contig900.18019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MSAERAIPHPSVSLEHLSVVACGSIIHNDKNQVGLGSTQSNSTFVYDAPG
QTTTEVSRNDVVLNPSGDSASVTLGTPVTAGGGQSMKEVIKSSPTSTVIS
SLQGTSVSNLSIDGSISWDRDESCLYLSANKAFRFKYIESDGVSPSMLVL
EGLNATTLEYMPKVEFSSD*
back to top

mRNA from alignment at L-elsbetiae_contig900:7312..9036-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig900.18019.1 ID=mRNA_L-elsbetiae_contig900.18019.1|Name=mRNA_L-elsbetiae_contig900.18019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1725bp|location=Sequence derived from alignment at L-elsbetiae_contig900:7312..9036- (Laminarionema elsbetiae ELsaHSoW15)
AACAGCCATGTCGACCACGGTTATGCAGGACGCAAAAGGATGTGTAGGGC
ACAGCTTCAATTCTTGGCCTATCTCCTGGGGCGTATCAAGAATCTACAGG
GGAATCGCGACGAACGAGACAGAAAGCGGCGGCTTGGCGAGAAGGAAAAC
AGGTGTGCTGCGAAGGCAGTTTCCACGTGTAGCAGTCCTGCGCGGCAGCC
TTGCACAGCAGTTTTGCACGGCAGTGTGGCAGTGGATCGTAACGCACGGC
ATTCGTCTGCATGGCAGTGTGGCAGCAGAAACGTGGTGCACAGCTTTCGT
TGCACATCGGTCCCGTTTATGCAGGGTGTCACCGCAGCCTTGTTCAACAT
TTGTTGCACAGTAGTCCCGTGAGTACGGCAGGCGACAGTACGCTAACCAC
CCTTAGATGATGCACGTACACTTTTGTTGTCACGTGGTTTCGCAGGCTAG
AGAGGCCGCAGTCAGGGAGAAGCATGAGAGAGAGGAGAGCGCAAAAACAT
GGCCAAAGAGGAACTCCAGGAGCCACGACACACGCTGGCGGTGGTGAGTT
TCAAGTGTATGTTTAGAATGTACATGTTGCGCATGTTGCGCAAAACGCAA
CATACCCCACTGAGGCAAGTAAGCACAGAAACTAACCACGCTTCCCTTTT
ACTCGATCGTCAGGCGAGGTGTAAAGCGATCAGAGCCATCAACGAAGCCA
AGGAGGCGAGGAAAGTAAACCAGCTTCTGGTCGGGGAGACGGTGCAGGGG
GGGGGTGGGGACGGATAACGGAAGCGCATTGCAACAGCAGGAATGGCCCC
GCCCGACGGTGAGCAGTTTGTTTTGTGGCCTGCTTGAGTGTAGTGGGGGG
GCGCATTTGCTTGATTCTTTGGCAAGTAGCGTTTTGACGCGTGACTCCTG
GTCCTTCACTTGCCCTGAAACAGGTCTTGGACCGTGGAGAGGCCACCACG
TTCGGGCTTGAGGGCTTCAAGATTGCCCCCTCTGACGTCCACGGACACGG
GCTGAAGAGTAAAGTAGACAATGGCGCTGAAGTTTTCAAGGCTGTCCTAC
CCGATTGGGCGCCTCTGGGGTCGGCTCGCGGTCGGAAGCTGGATACGCCA
AACAAAACAACCAGTACCGTGGTATATCCCAAAGAGGAAACGTTCCCGTT
TGTCGTCTTGGCATACGAAACAGGGGAACTAGTCATTATTTTGTATCGCA
AGTGCAACGGTAAATATGTCGGCAGAAAGGGCCATCCCTCACCCGTCTGT
TAGCCTGGAACATTTGTCAGTGGTAGCGTGTGGAAGTATTATACATAACG
ACAAGAATCAAGTCGGTCTAGGTAGCACACAGAGTAATTCTACCTTTGTG
TACGACGCACCGGGGCAAACTACGACGGAAGTAAGCAGAAACGATGTTGT
CTTGAACCCCTCGGGGGACAGCGCCAGCGTGACACTAGGTACACCAGTCA
CCGCCGGCGGGGGGCAAAGCATGAAGGAGGTGATAAAGTCAAGTCCGACC
AGTACAGTAATATCATCGTTGCAAGGGACGTCGGTTTCCAACCTTTCAAT
AGATGGTTCGATTTCTTGGGACCGCGATGAATCGTGCCTTTACCTGTCTG
CAAATAAGGCGTTTCGTTTCAAATACATTGAAAGCGACGGTGTGTCTCCA
TCAATGCTGGTGCTGGAGGGACTGAATGCCACTACTCTAGAATACATGCC
GAAGGTTGAATTCTCCTCTGACTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig900:7312..9036-

>mRNA_L-elsbetiae_contig900.18019.1 ID=mRNA_L-elsbetiae_contig900.18019.1|Name=mRNA_L-elsbetiae_contig900.18019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig900:7312..9036- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCAGAAAGGGCCATCCCTCACCCGTCTGTTAGCCTGGAACATTT
GTCAGTGGTAGCGTGTGGAAGTATTATACATAACGACAAGAATCAAGTCG
GTCTAGGTAGCACACAGAGTAATTCTACCTTTGTGTACGACGCACCGGGG
CAAACTACGACGGAAGTAAGCAGAAACGATGTTGTCTTGAACCCCTCGGG
GGACAGCGCCAGCGTGACACTAGGTACACCAGTCACCGCCGGCGGGGGGC
AAAGCATGAAGGAGGTGATAAAGTCAAGTCCGACCAGTACAGTAATATCA
TCGTTGCAAGGGACGTCGGTTTCCAACCTTTCAATAGATGGTTCGATTTC
TTGGGACCGCGATGAATCGTGCCTTTACCTGTCTGCAAATAAGGCGTTTC
GTTTCAAATACATTGAAAGCGACGGTGTGTCTCCATCAATGCTGGTGCTG
GAGGGACTGAATGCCACTACTCTAGAATACATGCCGAAGGTTGAATTCTC
CTCTGACTGAATGTCGGCAGAAAGGGCCATCCCTCACCCGTCTGTTAGCC
TGGAACATTTGTCAGTGGTAGCGTGTGGAAGTATTATACATAACGACAAG
AATCAAGTCGGTCTAGGTAGCACACAGAGTAATTCTACCTTTGTGTACGA
CGCACCGGGGCAAACTACGACGGAAGTAAGCAGAAACGATGTTGTCTTGA
ACCCCTCGGGGGACAGCGCCAGCGTGACACTAGGTACACCAGTCACCGCC
GGCGGGGGGCAAAGCATGAAGGAGGTGATAAAGTCAAGTCCGACCAGTAC
AGTAATATCATCGTTGCAAGGGACGTCGGTTTCCAACCTTTCAATAGATG
GTTCGATTTCTTGGGACCGCGATGAATCGTGCCTTTACCTGTCTGCAAAT
AAGGCGTTTCGTTTCAAATACATTGAAAGCGACGGTGTGTCTCCATCAAT
GCTGGTGCTGGAGGGACTGAATGCCACTACTCTAGAATACATGCCGAAGG
TTGAATTCTCCTCTGACTGA
back to top