mRNA_L-elsbetiae_contig9.18009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9.18009.1
Unique NamemRNA_L-elsbetiae_contig9.18009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9contigL-elsbetiae_contig9:81346..81969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816974.9870932-CDS-L-elsbetiae_contig9:81346..816381622816974.9870932-CDS-L-elsbetiae_contig9:81346..81638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 81347..81638 -
1691683953.9233665-CDS-L-elsbetiae_contig9:81346..816381691683953.9233665-CDS-L-elsbetiae_contig9:81346..81638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 81347..81638 -
1622816974.9998827-CDS-L-elsbetiae_contig9:81859..819691622816974.9998827-CDS-L-elsbetiae_contig9:81859..81969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 81860..81969 -
1691683953.9342706-CDS-L-elsbetiae_contig9:81859..819691691683953.9342706-CDS-L-elsbetiae_contig9:81859..81969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 81860..81969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9.18009.1prot_L-elsbetiae_contig9.18009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9 81347..81969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9.18009.1

>prot_L-elsbetiae_contig9.18009.1 ID=prot_L-elsbetiae_contig9.18009.1|Name=mRNA_L-elsbetiae_contig9.18009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
AVQASRRTAAGGCITALATWGTFVATAELLHCVSLYRYNENSKVLSLVAT
HSRDGLVVTALALSTHPSATSVGGCEQENKSFVPLVALADWTTRTVAVLA
SPRLNSCSSTTHKPTRGGTDDGSDGRGSDGSGEE
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mRNA from alignment at L-elsbetiae_contig9:81346..81969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9.18009.1 ID=mRNA_L-elsbetiae_contig9.18009.1|Name=mRNA_L-elsbetiae_contig9.18009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig9:81346..81969- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTCAAGCATCTCGTCGCACAGCGGCAGGGGGCTGTATCACGGCGCT
TGCGACCTGGGGAACTTTCGTCGCCACAGCCGAGTTATTGCACTGTGTGT
CTCTCTACAGGTGAGGGTAGCCTTGCCGCGAACTCGAACAAGAGTGGCGT
GTACAGTTCGCCGCTTTTTCTAAGTCGTTGAGCCCGCTGAAGGTTACAGG
TGGGAGCACCTCCCGAGGAAGAGGGTATATTTCCACCGATCATCCTTCAA
TGGTAAGGTCAGGCGACAACACTCGATCACTACCCCTTGGGCATTAACTC
TGTCGTCTCTGCTGCCGATTGACCCACACAGATACAACGAAAACTCGAAA
GTGTTGTCTTTGGTGGCGACACATTCTCGGGATGGCCTTGTGGTGACAGC
CCTCGCGCTTTCTACCCACCCTTCGGCCACCAGTGTTGGTGGCTGTGAAC
AAGAAAACAAGAGCTTTGTCCCACTGGTAGCTCTGGCGGATTGGACAACA
AGAACCGTGGCCGTGCTTGCTTCTCCCCGGCTCAACTCCTGTAGCTCTAC
CACGCACAAACCCACTAGGGGTGGCACTGATGACGGTAGTGATGGCCGCG
GGAGTGACGGCAGTGGTGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9:81346..81969-

>mRNA_L-elsbetiae_contig9.18009.1 ID=mRNA_L-elsbetiae_contig9.18009.1|Name=mRNA_L-elsbetiae_contig9.18009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig9:81346..81969- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTCAAGCATCTCGTCGCACAGCGGCAGGGGGCTGTATCACGGCGCT
TGCGACCTGGGGAACTTTCGTCGCCACAGCCGAGTTATTGCACTGTGTGT
CTCTCTACAGGCCGTTCAAGCATCTCGTCGCACAGCGGCAGGGGGCTGTA
TCACGGCGCTTGCGACCTGGGGAACTTTCGTCGCCACAGCCGAGTTATTG
CACTGTGTGTCTCTCTACAGATACAACGAAAACTCGAAAGTGTTGTCTTT
GGTGGCGACACATTCTCGGGATGGCCTTGTGGTGACAGCCCTCGCGCTTT
CTACCCACCCTTCGGCCACCAGTGTTGGTGGCTGTGAACAAGAAAACAAG
AGCTTTGTCCCACTGGTAGCTCTGGCGGATTGGACAACAAGAACCGTGGC
CGTGCTTGCTTCTCCCCGGCTCAACTCCTGTAGCTCTACCACGCACAAAC
CCACTAGGGGTGGCACTGATGACGGTAGTGATGGCCGCGGGAGTGACGGC
AGTGGTGAGGAGATACAACGAAAACTCGAAAGTGTTGTCTTTGGTGGCGA
CACATTCTCGGGATGGCCTTGTGGTGACAGCCCTCGCGCTTTCTACCCAC
CCTTCGGCCACCAGTGTTGGTGGCTGTGAACAAGAAAACAAGAGCTTTGT
CCCACTGGTAGCTCTGGCGGATTGGACAACAAGAACCGTGGCCGTGCTTG
CTTCTCCCCGGCTCAACTCCTGTAGCTCTACCACGCACAAACCCACTAGG
GGTGGCACTGATGACGGTAGTGATGGCCGCGGGAGTGACGGCAGTGGTGA
GGAG
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