mRNA_L-elsbetiae_contig9.18005.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9.18005.1
Unique NamemRNA_L-elsbetiae_contig9.18005.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9contigL-elsbetiae_contig9:67751..68315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816973.7880914-CDS-L-elsbetiae_contig9:67750..681581622816973.7880914-CDS-L-elsbetiae_contig9:67750..68158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 67751..68158 +
1691683952.9741511-CDS-L-elsbetiae_contig9:67750..681581691683952.9741511-CDS-L-elsbetiae_contig9:67750..68158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 67751..68158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816973.8009465-UTR-L-elsbetiae_contig9:68158..683151622816973.8009465-UTR-L-elsbetiae_contig9:68158..68315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9 68159..68315 +
1691683952.986352-UTR-L-elsbetiae_contig9:68158..683151691683952.986352-UTR-L-elsbetiae_contig9:68158..68315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9 68159..68315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9.18005.1prot_L-elsbetiae_contig9.18005.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9 67751..68158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9.18005.1

>prot_L-elsbetiae_contig9.18005.1 ID=prot_L-elsbetiae_contig9.18005.1|Name=mRNA_L-elsbetiae_contig9.18005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
NVPASAKAPESTPSGPAKATTGWLLLLLGDAVDATAALLMSFNWPLLLRR
GAVPPPPPAPPGWSGLISSASVEPPEVASAEPELLPTPVGWVVLLLGPLL
DTPQMVRPRPAEEECRSRNIGGAPVPGEPRSSPVI*
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mRNA from alignment at L-elsbetiae_contig9:67751..68315+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9.18005.1 ID=mRNA_L-elsbetiae_contig9.18005.1|Name=mRNA_L-elsbetiae_contig9.18005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=565bp|location=Sequence derived from alignment at L-elsbetiae_contig9:67751..68315+ (Laminarionema elsbetiae ELsaHSoW15)
AACGTCCCTGCATCGGCAAAGGCACCGGAGTCTACTCCATCCGGTCCCGC
GAAAGCAACAACGGGGTGGCTTTTACTATTGCTCGGCGATGCCGTCGATG
CCACTGCTGCTCTGCTTATGTCTTTCAACTGGCCGCTCCTCCTTCGCCGA
GGCGCCGTGCCGCCCCCGCCCCCAGCGCCACCTGGGTGGAGTGGCCTCAT
CTCCAGCGCCAGTGTGGAGCCACCTGAAGTGGCATCGGCCGAACCTGAGC
TGCTACCGACGCCGGTCGGGTGGGTGGTTCTCCTGCTTGGCCCGTTACTG
GATACGCCACAGATGGTGCGGCCACGGCCGGCTGAGGAGGAGTGCCGCTC
GCGGAACATCGGCGGGGCGCCGGTCCCTGGCGAACCAAGGTCCTCGCCGG
TCATCTGATTGACTGCATGGAACATGCCCTACGCGTGTTTCGTTCGTTGG
CTCTTGCTTGCTCCTCACGCTCTCACCGATCGAAAATTTTTCCACACATC
AGACAAACACAGAAAAGGGGTGTACTGCACCCACGCACCCAAGCCAACCA
ACTAGAGAGCAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9:67751..68315+

>mRNA_L-elsbetiae_contig9.18005.1 ID=mRNA_L-elsbetiae_contig9.18005.1|Name=mRNA_L-elsbetiae_contig9.18005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig9:67751..68315+ (Laminarionema elsbetiae ELsaHSoW15)
AACGTCCCTGCATCGGCAAAGGCACCGGAGTCTACTCCATCCGGTCCCGC
GAAAGCAACAACGGGGTGGCTTTTACTATTGCTCGGCGATGCCGTCGATG
CCACTGCTGCTCTGCTTATGTCTTTCAACTGGCCGCTCCTCCTTCGCCGA
GGCGCCGTGCCGCCCCCGCCCCCAGCGCCACCTGGGTGGAGTGGCCTCAT
CTCCAGCGCCAGTGTGGAGCCACCTGAAGTGGCATCGGCCGAACCTGAGC
TGCTACCGACGCCGGTCGGGTGGGTGGTTCTCCTGCTTGGCCCGTTACTG
GATACGCCACAGATGGTGCGGCCACGGCCGGCTGAGGAGGAGTGCCGCTC
GCGGAACATCGGCGGGGCGCCGGTCCCTGGCGAACCAAGGTCCTCGCCGG
TCATCTGAAACGTCCCTGCATCGGCAAAGGCACCGGAGTCTACTCCATCC
GGTCCCGCGAAAGCAACAACGGGGTGGCTTTTACTATTGCTCGGCGATGC
CGTCGATGCCACTGCTGCTCTGCTTATGTCTTTCAACTGGCCGCTCCTCC
TTCGCCGAGGCGCCGTGCCGCCCCCGCCCCCAGCGCCACCTGGGTGGAGT
GGCCTCATCTCCAGCGCCAGTGTGGAGCCACCTGAAGTGGCATCGGCCGA
ACCTGAGCTGCTACCGACGCCGGTCGGGTGGGTGGTTCTCCTGCTTGGCC
CGTTACTGGATACGCCACAGATGGTGCGGCCACGGCCGGCTGAGGAGGAG
TGCCGCTCGCGGAACATCGGCGGGGCGCCGGTCCCTGGCGAACCAAGGTC
CTCGCCGGTCATCTGA
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