mRNA_L-elsbetiae_contig9.18001.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9.18001.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI) HSP 1 Score: 541 bits (1394), Expect = 6.760e-186 Identity = 326/561 (58.11%), Postives = 383/561 (68.27%), Query Frame = 1
Query: 1 MKVSKDMRLSWLQHWHSMDDDGSNLLDYTEFVQGCGLHDNMWSWRMFSMLDKHFVGVAFRMCSRRGATWDPDQSVLDEKDIRLFVEERSKRLPQLWSARRDKKWTT----WARCTSLYSGCLQLSVGSAAKQATKSLADSARGVSHGGSMILQMSARKMDKTRDLLKSESQRLTGAARDAAKGMEKVGRLKTTAMVSVAIRRMRALAKAAKQASLASALPRHLPDAET----GKRVSEAARAGGGRALAALKRSVRVITAARHFREAGR--GNGPQRLQEENKAGATNSAKGDDETED-----LRGEYRDSEDLESTGEHQTEEQEGEEAPEKLWHTLTGAKAKAKVKLLQDLHWAATEIFYANLAAATERLEVARTQEKGHDFSADFPKLWCEAHMHGSQGERKTEHRRNRRSSATKRVANVYLRFGT-----GDDSGRSKLAKAFQRWRLNTCDAAVDGLSGSSLTLRRGETTAGEIGFTIGELAHIPRHNLSLKEMWETS-----GGENRLHDIVMNKARADRPRPWELCETYEREMVERINRRQAENNIPILPFPIC 1608
M VS DMRLSWLQ W SMD+DGSNLLDY EF+Q C L DNMWSWRMF++LDK+FV VAFRMCSRRG+TWDPD+SVLDEKDIRLFVEER L L++ T+ WAR S+ L V A+K+ TK LA+SAR +S G I ++SARKM TRD LK ES+ LT AA+ AA+ +EK GRLK T V+VA+ RMRALA+AA+Q PD ET GKRV EAA+ GG +AL+AL+RS ITAAR+F EAG G R ++ + + N GD D L GE DSED + E E + A EK W LT AKAKA+VK+ Q+ HWA TE FYANL A+ERLE RT+EKG+DFSADFPKLWC A+M GSQGER+ ++RR RRSSA+K+ ANVYLRF T GDDSGRSKLAKAF RWRLNTCDAAVD LSGS TL RG T A E T + PRH SLKEMWE++ G +H I+M KA+ADRP P ELCE YEREMVERI+RRQAENN+PI+P PIC
Sbjct: 1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYPEFLQACELRDNMWSWRMFNLLDKNFVEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEERI--LHHLYNEGLKDGPTSARARWAR--SMSPAELSSPVKIASKRETKHLAESARDISQSGGAIRELSARKMADTRDWLKVESEMLTEAAKGAARDLEKFGRLKATVTVAVAVNRMRALAEAARQR----------PDGETARNTGKRVGEAAKVGGEKALSALRRSFVAITAARYFSEAGPDPARGELRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRARED-FESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQGEREIQYRRKRRSSASKKAANVYLRFITLWQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASEESST-----YAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 541
BLAST of mRNA_L-elsbetiae_contig9.18001.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE) HSP 1 Score: 400 bits (1028), Expect = 7.650e-129 Identity = 300/713 (42.08%), Postives = 353/713 (49.51%), Query Frame = 1
Query: 1 MKVSKDMRLSWLQHWHSMDDDGSNLLDYTEFVQGCGLHDNMWSWRMFSMLDKHFVGVAFRMCSRRG----------------------ATWDPDQSVLD---------EKDIRLFVEERS--KRLPQLWSAR------------RDKKWTT-----------------------------------------------------WARCTSLYSGCLQLSVGSAAKQATKSLADSARGVSHGGSMILQMSARKMDKTRDLLKSESQRLTGAARDAAKGMEKVGRLKTTAMVSVAIRRMRALAKAAKQASLASALPRHLPDAET----GKRVSEAARAGGGRALAALKRSVRVITAARHFREAGR--GNGPQRLQEENKAGATNSAKGDDETED-----LRGEYRDSEDLESTGEHQTEEQEGEEAPEKLWHTLTGAKAKAKVKLLQDLHWAATEIFYANLAAATERLEVARTQEKG------------------------------HDFSADFPKLWCEAHMHGSQGERKTEHRRNRRSSATKRVANVYLRFG---------------------------------TGDDSGRSKLAKAFQRWRLNTCDAAVDGLSGSSLTLRRGETTAGEIGFTIGELAHIPRHNLSLKEMWETS-----GGENRLHDIVMNKARADRPRPWELCETYEREMVERINRRQAENNIPILPFPIC 1608
MKVS DMRLSWLQ W SMD+DGSNLLDYTEF+Q CGL DN+WSWRMF++LDK+FVGV RG A VL+ K IR E S + L + R R K WTT WAR S+ L SV +A+K+ATK LA+SAR +S G I Q+SARKM TR LK ES+ LT AA+ AA+ +EK GRLK A V+VA PD ET GKRV EAA+ GG +ALAAL+RS ITA R+F EA + G R Q++ + + N GD + D L G DSED + E E A EKLW LT AKAKA+VK+ Q+ HWAATE FY NL ATERLE +T+EKG +DFSADFPKLWC A M SQGERK ++RR RRSSA+K+ ANV++ G GDDSGRSKLAKAF RWRLNTCDAAVD LSGS TL +G A E T + PRH SL EMWE++ G LH I+M K +ADRP P ELCE YEREMVERI+RRQAENN+PI+P PIC
Sbjct: 1 MKVSSDMRLSWLQRWQSMDEDGSNLLDYTEFLQACGLRDNIWSWRMFNLLDKNFVGVMEAYLGARGFVTAVNRRVAAAAQRQFQTMALAAASKKMQVLNGMSSIGNTTAKKIRRVASESSIGRHLNSGGNERPTVAKPGDVVMKRLKLWTTATSAVDSERPLTTRVERVRATLRRVVSDSDLGNIGKSERSAKFGESLTGARARWAR--SMSPAELSSSVKTASKRATKHLAESARDISQSGGAIRQLSARKMADTRGWLKVESEMLTEAAKGAARDLEKFGRLKAIATVAVA-----------------------RPDDETARKTGKRVGEAAKVGGEKALAALRRSFVAITAVRYFSEAVKDAARGGLRRQDQQRPTSANLG-GDPDVADSGYGMLLGGDEDSEDSQRAREDDESEVPAT-AEEKLWDILTDAKAKAEVKVFQERHWAATEKFYENLVTATERLEEKKTKEKGKYSILNGIVGKKQFLNVTPCLPLRSGYEKRYDFSADFPKLWCVATMRDSQGERKIQYRRKRRSSASKKAANVFMCLGLDVNRQRKREQSTVWQVLASIQNNKLVLQQHQEAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSKGGRAASEESST-----NAPRHIPSLMEMWESAAAAGEGEGTHLHAIIMKKVQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 681 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9.18001.1 >prot_L-elsbetiae_contig9.18001.1 ID=prot_L-elsbetiae_contig9.18001.1|Name=mRNA_L-elsbetiae_contig9.18001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=537bp MKVSKDMRLSWLQHWHSMDDDGSNLLDYTEFVQGCGLHDNMWSWRMFSMLback to top mRNA from alignment at L-elsbetiae_contig9:18045..23734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9.18001.1 ID=mRNA_L-elsbetiae_contig9.18001.1|Name=mRNA_L-elsbetiae_contig9.18001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5690bp|location=Sequence derived from alignment at L-elsbetiae_contig9:18045..23734- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9:18045..23734- >mRNA_L-elsbetiae_contig9.18001.1 ID=mRNA_L-elsbetiae_contig9.18001.1|Name=mRNA_L-elsbetiae_contig9.18001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3222bp|location=Sequence derived from alignment at L-elsbetiae_contig9:18045..23734- (Laminarionema elsbetiae ELsaHSoW15)back to top |