mRNA_L-elsbetiae_contig899.17988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig899.17988.1
Unique NamemRNA_L-elsbetiae_contig899.17988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig899.17988.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.270e-8
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 MAPLFQVLSRETAVLTTAASPSPLWVAAKTLVCEALFHEENLEGYREAFTAAE 159
            M  LFQ L  E +   TA++ SPL  AAK + C+ALFHEE+LEGYREAFTAAE
Sbjct:  356 MGSLFQALPPEGS---TASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAE 405
[Close]
BLAST of mRNA_L-elsbetiae_contig899.17988.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.150e-7
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MAPLFQVLSRETAVLTTAASPSPLWVAAKTLVCEALFHEENLEGYREAFTAAEQ 162
            M  LF+ L  E  + TTA++ SPL  AAK +  +ALFHEE+LEGYREAFTAAE+
Sbjct:  404 MGSLFRALPPE--ISTTASASSPLKTAAKAVAFDALFHEEHLEGYREAFTAAEE 455
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig899.17988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU4_ECTSI3.270e-862.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIT9_9PHAE1.150e-759.26Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig899contigL-elsbetiae_contig899:13572..13874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816972.7918766-CDS-L-elsbetiae_contig899:13571..138741622816972.7918766-CDS-L-elsbetiae_contig899:13571..13874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig899 13572..13874 +
1691683952.2871618-CDS-L-elsbetiae_contig899:13571..138741691683952.2871618-CDS-L-elsbetiae_contig899:13571..13874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig899 13572..13874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig899.17988.1prot_L-elsbetiae_contig899.17988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig899 13572..13874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig899.17988.1

>prot_L-elsbetiae_contig899.17988.1 ID=prot_L-elsbetiae_contig899.17988.1|Name=mRNA_L-elsbetiae_contig899.17988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAPLFQVLSRETAVLTTAASPSPLWVAAKTLVCEALFHEENLEGYREAFT
AAEQAAAAAASGAAGGAEAGSDPASGEGGSKKKKRRRKNKGADGGEVADG
G
back to top

mRNA from alignment at L-elsbetiae_contig899:13572..13874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig899.17988.1 ID=mRNA_L-elsbetiae_contig899.17988.1|Name=mRNA_L-elsbetiae_contig899.17988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig899:13572..13874+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACCGCTGTTCCAGGTCCTCTCTCGCGAGACGGCTGTCTTGACGAC
TGCAGCCAGCCCTTCGCCTCTCTGGGTCGCCGCGAAAACACTCGTGTGCG
AGGCTCTCTTCCACGAGGAGAACCTCGAGGGCTACCGCGAAGCTTTCACG
GCGGCCGAACAGGCGGCAGCGGCTGCGGCTTCCGGTGCGGCTGGTGGTGC
CGAGGCCGGCAGCGACCCGGCGAGCGGCGAAGGCGGCAGCAAGAAGAAGA
AAAGGAGAAGGAAAAACAAAGGTGCGGACGGGGGAGAGGTCGCCGACGGT
GGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig899:13572..13874+

>mRNA_L-elsbetiae_contig899.17988.1 ID=mRNA_L-elsbetiae_contig899.17988.1|Name=mRNA_L-elsbetiae_contig899.17988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig899:13572..13874+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACCGCTGTTCCAGGTCCTCTCTCGCGAGACGGCTGTCTTGACGAC
TGCAGCCAGCCCTTCGCCTCTCTGGGTCGCCGCGAAAACACTCGTGTGCG
AGGCTCTCTTCCACGAGGAGAACCTCGAGGGCTACCGCGAAGCTTTCACG
GCGGCCGAACAGGCGGCAGCGGCTGCGGCTTCCGGTGCGGCTGGTGGTGC
CGAGGCCGGCAGCGACCCGGCGAGCGGCGAAGGCGGCAGCAAGAAGAAGA
AAAGGAGAAGGAAAAACAAAGGTGCGGACGGGGGAGAGGTCGCCGACGGT
GGAATGGCACCGCTGTTCCAGGTCCTCTCTCGCGAGACGGCTGTCTTGAC
GACTGCAGCCAGCCCTTCGCCTCTCTGGGTCGCCGCGAAAACACTCGTGT
GCGAGGCTCTCTTCCACGAGGAGAACCTCGAGGGCTACCGCGAAGCTTTC
ACGGCGGCCGAACAGGCGGCAGCGGCTGCGGCTTCCGGTGCGGCTGGTGG
TGCCGAGGCCGGCAGCGACCCGGCGAGCGGCGAAGGCGGCAGCAAGAAGA
AGAAAAGGAGAAGGAAAAACAAAGGTGCGGACGGGGGAGAGGTCGCCGAC
GGTGGA
back to top