mRNA_L-elsbetiae_contig8951.17958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8951.17958.1
Unique NamemRNA_L-elsbetiae_contig8951.17958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.460e-23
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEPTRL 204
            RLGHG+E SLSRPTL+DSL GERITQ+AAG AHSVAVSW+  AFTWGWG Q VLG G + D  +PTR+
Sbjct:  198 RLGHGNEASLSRPTLIDSLAGERITQVAAGAAHSVAVSWSGKAFTWGWGYQGVLGRGGDDDVLKPTRV 265          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.930e-23
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEPTRL 204
            RLGHGSE SLSRPTL++SL GERITQ+AAG+AHSVAVSW+  A+TWGWG   +LG G + D  +PTR+
Sbjct:  198 RLGHGSEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAYTWGWGYLGILGRGSDADVLKPTRV 265          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A7S3T8X5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T8X5_EMIHU)

HSP 1 Score: 60.8 bits (146), Expect = 1.640e-10
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    4 LGHGSEH--SLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEPTRL 204
            LGHG E   S S P  +++L G+R+  ++A   HS+A++ N   ++WGWG Q +LGHGD+ ++  P ++
Sbjct:   14 LGHGDEQIQSQSLPMRIEALAGQRVVAVSASLLHSLALTANGDVWSWGWGGQGLLGHGDQQNQLLPKKI 82          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A7I8VHM6_9ANNE (HECT-type E3 ubiquitin transferase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VHM6_9ANNE)

HSP 1 Score: 63.2 bits (152), Expect = 5.400e-10
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEP 195
            +LGHG+  +  +P +++SL G+ +T IAAG AHS A+S     +TWG G    LGHGD  D+ +P
Sbjct: 3886 KLGHGNRQTCDKPRIIESLRGKEVTDIAAGGAHSAAISAQGELYTWGKGRYGRLGHGDSEDQTKP 3950          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A7S0F5W7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F5W7_9CRYP)

HSP 1 Score: 62.0 bits (149), Expect = 1.330e-9
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 LGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEPTRL 204
            LGHG + S   P  ++SL GE+IT I+ G  HSVA+S +   FTWG G Q  LGHG+  D  +P  +
Sbjct:  236 LGHGDKSSQPAPKRIESLNGEKITNISCGAKHSVALSQDGTMFTWGHGEQGRLGHGNNTDFLQPEPI 302          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: L1JGR5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JGR5_GUITC)

HSP 1 Score: 61.2 bits (147), Expect = 1.340e-9
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEP 195
            RLGHG+  + S P  + SL  +RIT IAAG  HS+A+  +   FTWG G+   LGHG+ LD W P
Sbjct:   75 RLGHGNCRNYSLPQPIASLESKRITFIAAGWTHSMAIDDDGKLFTWGCGNAGRLGHGNVLDVWRP 139          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A7S4KTH7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KTH7_GUITH)

HSP 1 Score: 61.2 bits (147), Expect = 2.550e-9
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEP 195
            RLGHG+  + S P  + SL  +RIT IAAG  HS+A+  +   FTWG G+   LGHG+ LD W P
Sbjct:  265 RLGHGNCRNYSLPQPIASLESKRITFIAAGWTHSMAIDDDGKLFTWGCGNAGRLGHGNVLDVWRP 329          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A6P6WRX2_COFAR (PH, RCC1 and FYVE domains-containing protein 1 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6WRX2_COFAR)

HSP 1 Score: 60.8 bits (146), Expect = 3.480e-9
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQH--VLGHGDELDRWEPTRL 204
            RLGHG E   SRP LV+ L    +  +A G+ H+ AVS +   ++WG G+ +  +LGHG+++  W PTR+
Sbjct:  299 RLGHGIEKDFSRPRLVEYLAVTNVDFVACGEHHTCAVSTSGDLYSWGDGTHNAGLLGHGNDISHWIPTRI 368          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A7J7KHH7_BUGNE (HECT-type E3 ubiquitin transferase n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KHH7_BUGNE)

HSP 1 Score: 59.7 bits (143), Expect = 8.970e-9
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEP 195
            +LGHG+     +P L+++L G+ I QIAAG AHS AV+     +TWG G    LGHGD  D+  P
Sbjct: 2296 KLGHGNRLFCEKPRLIEALRGKEIVQIAAGGAHSAAVTAQGDLYTWGKGRYGRLGHGDSDDQTRP 2360          
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Match: A0A067CQE2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQE2_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 2.220e-8
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 LGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGSQHVLGHGDELDRWEPTRL 204
            LGHGS  S + P ++ +L   R+TQIAAG+ H +A++ + G F +G G    LG G   D WEP RL
Sbjct:  255 LGHGSTASEATPRVIAALASFRVTQIAAGRQHVLALTDHHGLFAFGDGRHGKLGTGTTEDHWEPVRL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8951.17958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDL9_ECTSI1.460e-2372.06Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L840_9PHAE6.930e-2367.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3T8X5_EMIHU1.640e-1039.13Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7I8VHM6_9ANNE5.400e-1044.62HECT-type E3 ubiquitin transferase n=1 Tax=Dimorph... [more]
A0A7S0F5W7_9CRYP1.330e-946.27Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JGR5_GUITC1.340e-949.23Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S4KTH7_GUITH2.550e-949.23Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A6P6WRX2_COFAR3.480e-941.43PH, RCC1 and FYVE domains-containing protein 1 n=4... [more]
A0A7J7KHH7_BUGNE8.970e-946.15HECT-type E3 ubiquitin transferase n=1 Tax=Bugula ... [more]
A0A067CQE2_SAPPC2.220e-844.78Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8951contigL-elsbetiae_contig8951:5123..5326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LDL9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816970.2197492-CDS-L-elsbetiae_contig8951:5122..53261622816970.2197492-CDS-L-elsbetiae_contig8951:5122..5326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8951 5123..5326 +
1691683950.3496277-CDS-L-elsbetiae_contig8951:5122..53261691683950.3496277-CDS-L-elsbetiae_contig8951:5122..5326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8951 5123..5326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8951.17958.1prot_L-elsbetiae_contig8951.17958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8951 5123..5326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8951.17958.1

>prot_L-elsbetiae_contig8951.17958.1 ID=prot_L-elsbetiae_contig8951.17958.1|Name=mRNA_L-elsbetiae_contig8951.17958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
RLGHGSEHSLSRPTLVDSLVGERITQIAAGQAHSVAVSWNRGAFTWGWGS
QHVLGHGDELDRWEPTRL
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mRNA from alignment at L-elsbetiae_contig8951:5123..5326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8951.17958.1 ID=mRNA_L-elsbetiae_contig8951.17958.1|Name=mRNA_L-elsbetiae_contig8951.17958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=204bp|location=Sequence derived from alignment at L-elsbetiae_contig8951:5123..5326+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCTGGGGCACGGCAGCGAGCACAGCCTCTCCCGCCCCACCCTGGTGGA CTCTCTCGTCGGCGAGCGGATAACCCAGATTGCGGCGGGGCAGGCTCACT CCGTGGCGGTCTCCTGGAATAGGGGGGCGTTCACGTGGGGCTGGGGGTCT CAGCATGTCCTCGGCCACGGGGACGAGCTCGACCGATGGGAGCCGACCAG GCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8951:5123..5326+

>mRNA_L-elsbetiae_contig8951.17958.1 ID=mRNA_L-elsbetiae_contig8951.17958.1|Name=mRNA_L-elsbetiae_contig8951.17958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig8951:5123..5326+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCTGGGGCACGGCAGCGAGCACAGCCTCTCCCGCCCCACCCTGGTGGA
CTCTCTCGTCGGCGAGCGGATAACCCAGATTGCGGCGGGGCAGGCTCACT
CCGTGGCGGTCTCCTGGAATAGGGGGGCGTTCACGTGGGGCTGGGGGTCT
CAGCATGTCCTCGGCCACGGGGACGAGCTCGACCGATGGGAGCCGACCAG
GCTCCGGCTGGGGCACGGCAGCGAGCACAGCCTCTCCCGCCCCACCCTGG
TGGACTCTCTCGTCGGCGAGCGGATAACCCAGATTGCGGCGGGGCAGGCT
CACTCCGTGGCGGTCTCCTGGAATAGGGGGGCGTTCACGTGGGGCTGGGG
GTCTCAGCATGTCCTCGGCCACGGGGACGAGCTCGACCGATGGGAGCCGA
CCAGGCTC
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