mRNA_L-elsbetiae_contig8948.17955.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8948.17955.1
Unique NamemRNA_L-elsbetiae_contig8948.17955.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KBF3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.530e-12
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  426 KISRMAHRTN**VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            K  +  HR    V +A+K E +W+ + E+ R +E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D N
Sbjct:   45 KDKKGVHR----VGIAIK-EAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVN 113
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.380e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSR--VGNDEN 641
            V +A+K E +WD + E  R +E I PRLMKV +Q+GRTCGVT V+GYAPTE +R   G D N
Sbjct:   53 VGIAIK-ETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVN 113
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.320e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            V +A+K E +W+ + EK R +E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D N
Sbjct:   53 VGIAIK-EAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVN 113
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.710e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            V +A+K E +W+ + E+ R +E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D+N
Sbjct:   85 VGIAIK-EAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDN 145
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5K1H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            + +A+K E +W+ +DE+ R  E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D N
Sbjct:    4 IXIAIK-EAMWESVDEEGRRAECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVN 64
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.290e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSR--VGNDEN 641
            V +A+K E +WD + E  R +E I PRLMKV +Q+GRTCGVT V+GYAPTE +R   G D N
Sbjct:   53 VGIAIK-ETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVN 113
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.330e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSR--VGNDEN 641
            V +A+K E +WD + E  R +E I PRLMKV +Q+GRTCGVT V+GYAPTE +R   G D N
Sbjct:  165 VGIAIK-ETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVN 225
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5L4L0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            V +A+K E +W+ + E+ R +E I PRLMKV +Q+GRTCGVT V+GYAPTE +R   G D N
Sbjct:   53 VGIAIK-EAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARTTAGGDVN 113
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KL89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL89_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.940e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSRV--GNDEN 641
            V +A+K E +W+ + E+ R +E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D N
Sbjct:  182 VGIAIK-EAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVN 242
[Close]
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.170e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  462 VDVAVKREQLWDGIDEKDRAMEFIGPRLMKVEMQMGRTCGVTLVIGYAPTECSR--VGNDEN 641
            V +A+K E +W+ + E+ R +E I PRLMKV +Q+GRTCGVT V+GYAPTE  R   G D N
Sbjct:   84 VGIAIK-EAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVN 144
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8948.17955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBF3_9PHAE2.530e-1250.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP87_9PHAE3.380e-1256.45Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K259_9PHAE1.320e-1156.45Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KCV1_9PHAE1.710e-1154.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H1_9PHAE2.000e-1154.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE2.290e-1156.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE2.330e-1156.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4L0_9PHAE2.500e-1154.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KL89_9PHAE2.940e-1154.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE3.170e-1154.84Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8948contigL-elsbetiae_contig8948:6088..6793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size707
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.9504495-CDS-L-elsbetiae_contig8948:6087..64411622816969.9504495-CDS-L-elsbetiae_contig8948:6087..6441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8948 6088..6441 +
1691683950.1135728-CDS-L-elsbetiae_contig8948:6087..64411691683950.1135728-CDS-L-elsbetiae_contig8948:6087..6441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8948 6088..6441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.9623587-UTR-L-elsbetiae_contig8948:6441..67931622816969.9623587-UTR-L-elsbetiae_contig8948:6441..6793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8948 6442..6793 +
1691683950.1309474-UTR-L-elsbetiae_contig8948:6441..67931691683950.1309474-UTR-L-elsbetiae_contig8948:6441..6793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8948 6442..6793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8948.17955.1prot_L-elsbetiae_contig8948.17955.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8948 6088..6441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8948.17955.1

>prot_L-elsbetiae_contig8948.17955.1 ID=prot_L-elsbetiae_contig8948.17955.1|Name=mRNA_L-elsbetiae_contig8948.17955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
QLFGRRLPLCTTRPLRCFFFVQHDLSAGVTGGGRHWGLFLPFIFVFCSTF
LVRFLPRVFIARWVRLSLPSPTVKSKFDYSDFLSFIYSISTANVHTFHPD
RDSNSRLLLLAGFGVTH*
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mRNA from alignment at L-elsbetiae_contig8948:6088..6793+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8948.17955.1 ID=mRNA_L-elsbetiae_contig8948.17955.1|Name=mRNA_L-elsbetiae_contig8948.17955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=706bp|location=Sequence derived from alignment at L-elsbetiae_contig8948:6088..6793+ (Laminarionema elsbetiae ELsaHSoW15)
CAATTATTCGGGCGCCGCCTGCCACTGTGTACGACACGACCGTTGCGGTG
CTTCTTCTTCGTACAGCATGACCTATCCGCCGGGGTTACAGGAGGGGGTA
GACACTGGGGCTTGTTTCTTCCTTTTATTTTTGTTTTTTGCTCCACGTTT
CTCGTGCGGTTCTTGCCTCGCGTTTTTATCGCGAGATGGGTACGGCTGTC
CCTTCCCTCTCCAACGGTGAAGTCGAAGTTTGATTACTCCGATTTTCTCA
GTTTTATTTATTCGATTTCAACTGCAAATGTGCACACCTTTCATCCCGAC
AGGGATTCGAACTCGCGACTTCTGCTGCTAGCGGGTTTCGGGGTTACCCA
CTAGACGACCCAGACGACTGGTCTCATTCGTTGTGAAATTTGTTGTGAAA
TATGAAAAATTAGTGCCCCGATGACAAAATCTCAAGAATGGCCCACAGAA
CAAATTAGTAGGTGGATGTCGCGGTCAAGCGGGAACAACTGTGGGACGGG
ATTGATGAGAAAGACAGGGCGATGGAGTTTATCGGCCCGAGATTGATGAA
GGTGGAGATGCAAATGGGCCGCACTTGCGGGGTAACTTTGGTGATCGGGT
ACGCCCCCACTGAGTGCAGCCGAGTAGGCAATGATGAGAATGTACTAGGT
CAATCTTGATTTTGTGCTGGCGAAACACGAGACCCTCCGGGGTCCAGTTT
AGTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8948:6088..6793+

>mRNA_L-elsbetiae_contig8948.17955.1 ID=mRNA_L-elsbetiae_contig8948.17955.1|Name=mRNA_L-elsbetiae_contig8948.17955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig8948:6088..6793+ (Laminarionema elsbetiae ELsaHSoW15)
CAATTATTCGGGCGCCGCCTGCCACTGTGTACGACACGACCGTTGCGGTG
CTTCTTCTTCGTACAGCATGACCTATCCGCCGGGGTTACAGGAGGGGGTA
GACACTGGGGCTTGTTTCTTCCTTTTATTTTTGTTTTTTGCTCCACGTTT
CTCGTGCGGTTCTTGCCTCGCGTTTTTATCGCGAGATGGGTACGGCTGTC
CCTTCCCTCTCCAACGGTGAAGTCGAAGTTTGATTACTCCGATTTTCTCA
GTTTTATTTATTCGATTTCAACTGCAAATGTGCACACCTTTCATCCCGAC
AGGGATTCGAACTCGCGACTTCTGCTGCTAGCGGGTTTCGGGGTTACCCA
CTAGCAATTATTCGGGCGCCGCCTGCCACTGTGTACGACACGACCGTTGC
GGTGCTTCTTCTTCGTACAGCATGACCTATCCGCCGGGGTTACAGGAGGG
GGTAGACACTGGGGCTTGTTTCTTCCTTTTATTTTTGTTTTTTGCTCCAC
GTTTCTCGTGCGGTTCTTGCCTCGCGTTTTTATCGCGAGATGGGTACGGC
TGTCCCTTCCCTCTCCAACGGTGAAGTCGAAGTTTGATTACTCCGATTTT
CTCAGTTTTATTTATTCGATTTCAACTGCAAATGTGCACACCTTTCATCC
CGACAGGGATTCGAACTCGCGACTTCTGCTGCTAGCGGGTTTCGGGGTTA
CCCACTAG
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