mRNA_L-elsbetiae_contig894.17954.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig894.17954.1
Unique NamemRNA_L-elsbetiae_contig894.17954.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig894.17954.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.340e-52
Identity = 81/119 (68.07%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:   64 MKIFSRNASTLLAVGLIVTVARGQTEAECSLSALSGAEVEQLGIYGKDLYLEPDCVNGATPLPVHCNYMGLGQECRGCFLTCDGATQYMDDFSEEITVWGADAVIHFCPDAEVDGLEDC 420
            MKIFS  A+ + AV   ++ AR + E EC +S+LS A  EQL +Y KDLYLEPDCVNGA+P+PVHCNYMGLGQECRGCF+TCDGAT+Y+DDF+EEI+VWG DA++HFCPDAEV+ LE+C
Sbjct:    1 MKIFSHPAAIIFAV---LSFARVKAE-ECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
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BLAST of mRNA_L-elsbetiae_contig894.17954.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.870e-29
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:  148 CSLSALSGAEVEQLGIYGKDLYLEPDCVNGATPLPVHCNYMGLGQECRGCFLTCDGATQYMDDFSEEITVWGADAVIHFCPDAEVDGLEDC 420
            CS+ +L+ A+ +QL +Y  D+YLE DCVN +TPLP+ CNYMGLGQECRGCFLTC GA  Y+DD +E I  +G DAVI+FCP +EV  L +C
Sbjct:  584 CSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAEC 674
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BLAST of mRNA_L-elsbetiae_contig894.17954.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.260e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  148 CSLSALSGAEVEQLGIYGKDLYLEPDCVNGATPLPVHCNYMGLGQECRGCFLTCDGATQYMDDFSEEITVWGADAVIHFCPDAEVDGLEDC 420
            CS  +L+  + +QL +Y  D+YLE DCVN +TPLP+ CNYMGLGQECRGCFL                 V G DAVI+FCP +EV  L +C
Sbjct:  489 CSRDSLNDVDQQQLNLYENDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLAL-------------AHVKGEDAVINFCPQSEVSDLAEC 566
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BLAST of mRNA_L-elsbetiae_contig894.17954.1 vs. uniprot
Match: A0A6H5KP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP24_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-15
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  193 IYGKDLYLEPDCVNGATPLPVHCNYMGLGQECRGCFLTCDGATQYMDDFSEEITVWGADAVIHFCPDAE 399
            +Y K LYLEPDCVNGA+P+PVHCNYMGLGQECRGCF+             E   V G    + FCP AE
Sbjct:    1 MYDKGLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMD-----------KEIAVVRGDRGGMCFCPLAE 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig894.17954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDU5_ECTSI7.340e-5268.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI1.870e-2960.44N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KWI6_9PHAE9.260e-1950.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP24_9PHAE1.020e-1556.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig894contigL-elsbetiae_contig894:15753..21065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003370.1
Exons3
Model size1032
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig894.17954.1prot_L-elsbetiae_contig894.17954.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig894 15816..20456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.869857-UTR-L-elsbetiae_contig894:15752..158151622816969.869857-UTR-L-elsbetiae_contig894:15752..15815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 15753..15815 +
1691683950.0656857-UTR-L-elsbetiae_contig894:15752..158151691683950.0656857-UTR-L-elsbetiae_contig894:15752..15815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 15753..15815 +
1622816969.9160612-UTR-L-elsbetiae_contig894:20456..210651622816969.9160612-UTR-L-elsbetiae_contig894:20456..21065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 20457..21065 +
1691683950.1032407-UTR-L-elsbetiae_contig894:20456..210651691683950.1032407-UTR-L-elsbetiae_contig894:20456..21065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 20457..21065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.8815486-CDS-L-elsbetiae_contig894:15815..158791622816969.8815486-CDS-L-elsbetiae_contig894:15815..15879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 15816..15879 +
1691683950.0755546-CDS-L-elsbetiae_contig894:15815..158791691683950.0755546-CDS-L-elsbetiae_contig894:15815..15879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 15816..15879 +
1622816969.8940048-CDS-L-elsbetiae_contig894:19032..192651622816969.8940048-CDS-L-elsbetiae_contig894:19032..19265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 19033..19265 +
1691683950.084361-CDS-L-elsbetiae_contig894:19032..192651691683950.084361-CDS-L-elsbetiae_contig894:19032..19265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 19033..19265 +
1622816969.9052677-CDS-L-elsbetiae_contig894:20393..204561622816969.9052677-CDS-L-elsbetiae_contig894:20393..20456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 20394..20456 +
1691683950.0935497-CDS-L-elsbetiae_contig894:20393..204561691683950.0935497-CDS-L-elsbetiae_contig894:20393..20456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 20394..20456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig894.17954.1

>prot_L-elsbetiae_contig894.17954.1 ID=prot_L-elsbetiae_contig894.17954.1|Name=mRNA_L-elsbetiae_contig894.17954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MKIFSRNASTLLAVGLIVTVARGQTEAECSLSALSGAEVEQLGIYGKDLY
LEPDCVNGATPLPVHCNYMGLGQECRGCFLTCDGATQYMDDFSEEITVWG
ADAVIHFCPDAEVDGLEDC*
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mRNA from alignment at L-elsbetiae_contig894:15753..21065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig894.17954.1 ID=mRNA_L-elsbetiae_contig894.17954.1|Name=mRNA_L-elsbetiae_contig894.17954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5313bp|location=Sequence derived from alignment at L-elsbetiae_contig894:15753..21065+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACACATCACACACTACAGACCCCAAACTCCAAGCGCAGTATCAACCG
GAGGGCAAAGGAAATGAAGATCTTCTCGCGCAACGCTTCTACATTATTGG
CTGTTGGCCTCATCGTCACCGTCGCACGTGAGGTTGTTGTGCACAAAGAG
GGATACAATCTGTACTACTTGGTGTAGCTAGTAGATACACACACACATAA
CGAGTTCAACACATACGAAGCTTGCGTGGCCGCCTACCAGGGATCGACAG
GAATGCCTCTCTCTCGGTGGTGCCCGCCGATGCGAGGCAATGTTGCACCA
TCTACTACTCCTTGATCCCTTGTTCGCCATGATCCACGGTCGAGTAGGGA
TCTGTCACACACAGCTCGTAAACGGCAAGGATGGGCATCAGATCTTGGCT
CTTCAGAAGAGAGATACTACATAGATAGATCCAAGCGCTGACTGCGCACG
GCCAATGTTGTTCAGTGCACTGCAAAGGATGGCTACAAAGGATAGCTAAG
GGTGGCGAGCCATAGCGAAGTACAGCGATATTGGTTGCCCGCTCACCTTG
TTGGGCAAGCACGCTGGGGGTATAAATGTAAAACTCTATCTAAAAAAAAT
TGCTTTCTTGCTCCAGGTGACCTGCATACGGTAATCCTTTAGCATTGCAT
CAAACGAGCCATAGATACGGAGTAGAAGATACAACGTCTCCGGATCTGAC
AAATATAGCTGCTACAGGATATATTTCTAACAGAGGTGATCGGTGGCCTT
GGGCGATCCACATTTCGTGATGTGCTCGCGGCTGTCGTTGTGATGTGATG
CGAGAGCACTCCTCTAAGATCCATTTACATTGGATTTTTCGCGCCAGGGA
TTCGAGCCCCGGCATGCCATTTTTTTTTCTTTTTGTTTCGTGTTTCAATC
TTGTTGTTTCTTCACATCAAAAACCGTTCCGATCTCTCCACCCAGTACCT
CCCTATGGGCGTACTATTTCAACACTTGATGCGGCCAATTCCCGTTATCA
CAGGCTAACTTATACCTAAAAAAGGTATACGAAAATAAAATGAACCCGAC
CGAAGGGTCAGCAAAGCGATAAAATCAGAGACAACTATCTAGTCTAGATA
AATAGTGTGGAGCCTCCCGTTCCCCTCTTCACACTATGCATGTGAGGTCA
AAACAAAACTTGACACCCTGGCACGGAACACCCTGGCATTGTTAGGGTAC
TAAGATAGAACCAGGAGATGTCTACCTCGGATTGATGATGTTGGCTTGTC
CAGTTTTGTTTTGACCTCACATAATGTGAAGAGGGGAACGGGAGGCTCCA
CACTATTTAGATATATTTGTCTTTGATTATATCACTTTGCTGACCCTTCG
GCCTTCGGTCGGGTTCATTTTACTTTCGTATACCTTTTTTAGGTATAAGT
TAGCCTGTGACAACGGGAATTGACCGCATCAAGTGTTGGAATAGTACGCT
CATAGGGAGGTACTGGGTGGAGAGATCGGAACGGTTTTTAATGTGAAACA
ACAAGATTGAAACACGAAAAAAAAAGAAAAAAAATCTAGTCCTCCCCATC
GAATTTACCGCCCACATGATAAAAAACAAGAAACAAGATCAGGGCAAAAA
GGACCCCAGACAAGATAAGAAACAAACACTCATAACTCCTCCGGTGGTGG
TACAAGATGGTACCGCCGTAGGGGGGAGGGGGATCAGCCAAAGAATCGAT
TCAATCCGCAACATGTCGCACTACTGCGTCCGCCTCCGCCCTCTTGCGCA
CGCCACGTGCAGTTTCGATCGTTTCCGGTCTCGTTCTCCTATTGTAGGTT
GGTGTCGTGTTTTTTCTGTTGCTGGGTCGTTTGTTGTCTCGTTCGATCGG
CCGTTTTCGGCTAGCCTCCTCCTCCTTCTTGTGGTCTGCATTCTATTTTC
CCATCAACTTGTGGGCTTTTCGGCTTTACATTTAACCCTTTTAGACCTGG
ATGGCCATATGGCGACAATTTGGCGACAGGCCTGGTATCAACGCTTTTCC
CCCTAGAGGGAGAACTTCTGAGTAGCCAAGGCCTGGAAAAAAATTTATCT
CGGCTTTCAGTATAGAAAGTGTCGCCAAAAGTTTGATTTGGCCTTGAGTA
CGAAAACTGTCGCCATTTTTTTAGTTTTCGGTTTTCTCTCTGTTGTGTGC
ACGGAAGCTTGTGTAATCACGGTTTACGTTCCTCCTGCATCTGTGGGATA
GCGATGCACCCTCTTGTTTCACCCCAGACACTCTGCTGGCGGGTCCGGCA
AGCCCGGGTAGAACGCGGGGCCCGCAGATGGGTTCTAGAAGGGACCGTGG
CTCTTTAGCCAATCACAGGCGGCCAGATTATAGGCGGGTTCTAAAAGGGT
TAAATCATATCAGAGGGCCCCGATCGACAGTAATACAAATCAAGAAGGGA
AGGACCCGGAAGATTTATTTACGGCAAGACCACCAATAGTAAACAGGATA
GTCTACATAGATAGTTCTAGAGACAGACATCGAGCATTGCTTCGTACAGA
GTATGTTTTCTCCGTTTTGGCAGTTTGGAAGTGTTCGAGTTACCCTGTCG
AGGAGAGTTCGAGAAAACCCCGCGGGTACAACCCACCGGGTGCCAAGCTC
CATCACACCCCTCGCCGCAGGTGTCGTCTGCTTCTATATGTCTACATAGA
AGTATTTTACAGTTAAAACAGGAAGATCACGAACGCACCCACGAGACGGA
GACCCTTCGCTCGGATTTCTCTCTCAATAATGGCGACTCAGCATCGCCTC
ACGTTCTGTCTTCCTTGATGCCAATCGCTGCTTAGTCGACGCTCTCGGAT
CCTTACATTTATCATGCCCCGCCTCTTGGTAGGTGGGTTGGAATCGAAAG
TGATTTCAGCACGCCGCCACCCACAGCGCTCGCGCGGTAGCGAAATTATT
TCGGCCATTGATTCGACGGACTCCCTCACTCTGGCATCCTCGTCTCGCCT
ACATATATCTACGTACCACAAGACTTCGACCTCACCGTCGACGAGGGAAA
GGGACGGCTGAAACCCTTCTCGCGACAAAAATCTTAGGCAAGCATCGCAG
ACGGGGGAAGTGGGGGCCTTGGGGAAAGGAACCCTTCCGTGCGACCACGG
TTCAGTACTCTGGCAAAATGTCGTCGTGACAGGGAGCCCATCGAGCACTG
GAAATAAATGTGAAAAAAAAAAAGCAGCTACATACGGGCCAAATACGTTT
ATAACCAGCCCCGAATCGTCTTTTCCTTGACCCCACTGCACCACGGCACC
ACGGCACTTGTCGTACTGCTGCTGCCGTAGGTGGCCAGACAGAGGCCGAG
TGCAGCTTGTCGGCCCTCTCTGGCGCCGAGGTGGAGCAGCTCGGCATCTA
CGGCAAGGACCTCTACCTGGAGCCCGACTGCGTGAACGGCGCCACCCCCC
TGCCCGTCCACTGCAACTACATGGGCCTGGGCCAGGAGTGCCGCGGTTGC
TTCTTGACTTGCGACGGGGCGACGCAGTACATGGATGACTTCTCCGAAGA
GATCACCGTTTGGGTGCGTCCCAGTTTTGAGAAGGAGTTGTGTCTACATC
ATAGATTGGTCATAGGGATAGATAGGAGAAACAGTACAAGCAGTCTAGAG
CCGCACAGAACGGATCGACCGGTGTTTGTGCTCCGCGATTCCTACTTGCG
TATGTAGACTCTCTATTTATTCAGCCGGGCGCACGCGTGTACCGAGCGTT
TTTCCTGGAAAAAACGTAATCCCCTTTCGGGCACATTCACCTCACAATCA
CATTTACTTGGAAAACCGAGGGGAGGCCTCGCTGCAAAATTAAGGGGGAC
AGGCGCACGACGAAGACCCCCAACGAAACTGTCCTTCCCCTCAATCATCT
GAGTAGTCTCGAAGTTTGTGCTTCACACGATATGTACAGCTCCCATGCTC
TTGATTTATATGTATGTATCTACACATGTAGACTATGCATTATCCGTGAT
GTATGTACAGAGACAAAAAAACTCCGTGTACGTAACGTAAGCGTATCACG
ATCCATTCATTTTCAACACATCGAAATATTTAATCAAATTCAAATGCGTC
ATTCCTCCGGGCACTAAGCTGAAAAATCCAGACCAGCAAATGCTTGATTG
CGTGCAACTCCCGCTCCCAATCATCCCCGCCCCCCTCCCTAAAATTTGCT
CGTTGTGTTTACTTCGCGGATTCGACTTATTTTTCTTGCTCATACCGACC
GGTGTTTAGGCAAGGGCCCTTGTATTTATCTGTGGCACATACCGTAAGTG
TGCGAAGGTTCGCACCCCCGTGTTAGCGTTTTTCTACAGCGTATTTCTCC
ATAACCAGGAGGGTACCACTGCCGAAAAGGGGGGTTTTTGAAACGTCTCG
CCGGGGGCTTTCCAGAGAGGTATCAGTTGGTGTTCGCGCCCTCCTGGTTG
TGGAGAAATACGCCTTAGAAAAATGCCAAAACGCGGGGGTGCGAACCTTC
ACGCACACTTACGGTATGTAGCTTGCCTCCCTCTCCTCCTTCGCCCATTG
AACATTGTTTTCGTTTTCTTCATATAGTCTATATGCACAAACAAACGTCC
ACGTCAAACATATATGTACGTACCTTTACCTTCCATGCCCTTGTTGTTGC
GTCGCCGCGACTTGAAAACGACCGTGTTCGAAAAAAAACAGGGCGCGGAT
GCCGTCATCCACTTCTGCCCCGACGCTGAGGTGGACGGCCTTGAAGACTG
CTAATATTATTATTAGTAGCGTGGAGAACTTCGTCTACACACACACACAC
GCCTATTACGTCTGAACGAAGTTGTCCGCGATGGCATTGCATCGGCGTTC
GCGACATAGAAGTATACGAGAAGAAGACCCGTACATCGATCGCTGCTTTG
CATGTACTATTGTACGAAGTATTGTTCATATGTATGTACGGTAGTGTTGG
AGTGTTTTTGAGCGTACAAAAAACAAAATACGTTTTTGATTTCGTCGGCG
TTTCATTCAACACTATTCTTGCCGAGGAAAATGGGCCTTGGGACAACGAA
CGGTCGAGAAAATCGCCTATAGCTAGCTAGGTGCTACTACCGCGAAGAGA
GAGAGCCAGTAGATGGCGAATCTCCCGTTCTATGTAGTCGGTGTAACGCT
TGTTTGTAATATACTCTTGCCATAGGTCTGGTCAAGTCTGGTAGGTACAT
ACTAAATTAATTAGGGGTTTGGTGGGAATCATGACGTTGAGGGCTAAATG
ATTTGAAACGAAAAATGCTTGAACCCGCGCTGAACACTTCCCGAATGTTT
CAGCCGCTTGCTTTTACTACATACATACATACATGCATTTTCGAGCCCCG
GCGAAGAAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig894:15753..21065+

>mRNA_L-elsbetiae_contig894.17954.1 ID=mRNA_L-elsbetiae_contig894.17954.1|Name=mRNA_L-elsbetiae_contig894.17954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig894:15753..21065+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATCTTCTCGCGCAACGCTTCTACATTATTGGCTGTTGGCCTCAT
CGTCACCGTCGCACATGAAGATCTTCTCGCGCAACGCTTCTACATTATTG
GCTGTTGGCCTCATCGTCACCGTCGCACGTGGCCAGACAGAGGCCGAGTG
CAGCTTGTCGGCCCTCTCTGGCGCCGAGGTGGAGCAGCTCGGCATCTACG
GCAAGGACCTCTACCTGGAGCCCGACTGCGTGAACGGCGCCACCCCCCTG
CCCGTCCACTGCAACTACATGGGCCTGGGCCAGGAGTGCCGCGGTTGCTT
CTTGACTTGCGACGGGGCGACGCAGTACATGGATGACTTCTCCGAAGAGA
TCACCGTTTGGGTGGCCAGACAGAGGCCGAGTGCAGCTTGTCGGCCCTCT
CTGGCGCCGAGGTGGAGCAGCTCGGCATCTACGGCAAGGACCTCTACCTG
GAGCCCGACTGCGTGAACGGCGCCACCCCCCTGCCCGTCCACTGCAACTA
CATGGGCCTGGGCCAGGAGTGCCGCGGTTGCTTCTTGACTTGCGACGGGG
CGACGCAGTACATGGATGACTTCTCCGAAGAGATCACCGTTTGGGGCGCG
GATGCCGTCATCCACTTCTGCCCCGACGCTGAGGTGGACGGCCTTGAAGA
CTGCTAAGGCGCGGATGCCGTCATCCACTTCTGCCCCGACGCTGAGGTGG
ACGGCCTTGAAGACTGCTAA
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