mRNA_L-elsbetiae_contig894.17953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig894.17953.1
Unique NamemRNA_L-elsbetiae_contig894.17953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig894.17953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig894contigL-elsbetiae_contig894:14549..15116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig894.17953.1prot_L-elsbetiae_contig894.17953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig894 14561..14932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.6194732-UTR-L-elsbetiae_contig894:14548..145601622816969.6194732-UTR-L-elsbetiae_contig894:14548..14560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 14549..14560 +
1691683949.8805318-UTR-L-elsbetiae_contig894:14548..145601691683949.8805318-UTR-L-elsbetiae_contig894:14548..14560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 14549..14560 +
1622816969.6500723-UTR-L-elsbetiae_contig894:14932..151161622816969.6500723-UTR-L-elsbetiae_contig894:14932..15116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 14933..15116 +
1691683949.9035687-UTR-L-elsbetiae_contig894:14932..151161691683949.9035687-UTR-L-elsbetiae_contig894:14932..15116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig894 14933..15116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.6363122-CDS-L-elsbetiae_contig894:14560..149321622816969.6363122-CDS-L-elsbetiae_contig894:14560..14932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 14561..14932 +
1691683949.8927047-CDS-L-elsbetiae_contig894:14560..149321691683949.8927047-CDS-L-elsbetiae_contig894:14560..14932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig894 14561..14932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig894.17953.1

>prot_L-elsbetiae_contig894.17953.1 ID=prot_L-elsbetiae_contig894.17953.1|Name=mRNA_L-elsbetiae_contig894.17953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MSTDVSAACFVFCGIEAAAPARFFAAFHQGSVDVFVVHRGFSLSAPPRFH
SRFLHVSTAVQYRICLFSWTKLHEVSGTGSKLHRPWSTRICTARRPRVAA
RGTGVLDCWQRIYTCNACCLIYR*
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mRNA from alignment at L-elsbetiae_contig894:14549..15116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig894.17953.1 ID=mRNA_L-elsbetiae_contig894.17953.1|Name=mRNA_L-elsbetiae_contig894.17953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=568bp|location=Sequence derived from alignment at L-elsbetiae_contig894:14549..15116+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTAGATTGTAATGTCTACAGATGTTTCAGCGGCCTGCTTCGTTTTTTG
TGGAATCGAAGCGGCGGCGCCGGCCCGTTTTTTTGCGGCGTTCCACCAAG
GGTCGGTCGATGTCTTCGTGGTTCATCGTGGTTTCTCCTTAAGTGCCCCC
CCCCGGTTTCACTCTCGGTTTTTGCATGTATCTACTGCTGTACAATACCG
CATATGTTTGTTCTCTTGGACAAAGTTGCATGAGGTCAGTGGTACGGGTT
CAAAGTTGCACCGCCCCTGGAGCACACGTATATGCACCGCCCGCAGGCCA
AGAGTGGCGGCGCGTGGCACGGGCGTTCTTGACTGCTGGCAGCGTATTTA
TACTTGTAACGCCTGCTGCCTCATTTACAGGTGACCGCTTAAACCGAGGG
GGGGAAGGTCCGGTTGTTCGCCATGCGTGATGATCAATTGATTAATGTTT
TAGTTCATCTTCGCTGCTGTGCTTCGCATAACGAGCCACTCGCTAACTAT
TTTCAAGATGCGTCACAATCTAGCTAGCTATTTAGCTTATCTAGGGCTTT
CAACACTCGAGGGCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig894:14549..15116+

>mRNA_L-elsbetiae_contig894.17953.1 ID=mRNA_L-elsbetiae_contig894.17953.1|Name=mRNA_L-elsbetiae_contig894.17953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig894:14549..15116+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTACAGATGTTTCAGCGGCCTGCTTCGTTTTTTGTGGAATCGAAGC
GGCGGCGCCGGCCCGTTTTTTTGCGGCGTTCCACCAAGGGTCGGTCGATG
TCTTCGTGGTTCATCGTGGTTTCTCCTTAAGTGCCCCCCCCCGGTTTCAC
TCTCGGTTTTTGCATGTATCTACTGCTGTACAATACCGCATATGTTTGTT
CTCTTGGACAAAGTTGCATGAGGTCAGTGGTACGGGTTCAAAGTTGCACC
GCCCCTGGAGCACACGTATATGCACCGCCCGCAGGCCAAGAGTGGCGGCG
CGTGGCACGGGCGTTCTTGACTGCTGGCAGCGTATTTATACTTGTAACGC
CTGCTGCCTCATTTACAGGTGAATGTCTACAGATGTTTCAGCGGCCTGCT
TCGTTTTTTGTGGAATCGAAGCGGCGGCGCCGGCCCGTTTTTTTGCGGCG
TTCCACCAAGGGTCGGTCGATGTCTTCGTGGTTCATCGTGGTTTCTCCTT
AAGTGCCCCCCCCCGGTTTCACTCTCGGTTTTTGCATGTATCTACTGCTG
TACAATACCGCATATGTTTGTTCTCTTGGACAAAGTTGCATGAGGTCAGT
GGTACGGGTTCAAAGTTGCACCGCCCCTGGAGCACACGTATATGCACCGC
CCGCAGGCCAAGAGTGGCGGCGCGTGGCACGGGCGTTCTTGACTGCTGGC
AGCGTATTTATACTTGTAACGCCTGCTGCCTCATTTACAGGTGA
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