mRNA_L-elsbetiae_contig8936.17950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8936.17950.1
Unique NamemRNA_L-elsbetiae_contig8936.17950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8936.17950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8936contigL-elsbetiae_contig8936:7047..8111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1066
Cds size720
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.4597437-CDS-L-elsbetiae_contig8936:7046..77661622816969.4597437-CDS-L-elsbetiae_contig8936:7046..7766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8936 7047..7766 +
1691683949.7996235-CDS-L-elsbetiae_contig8936:7046..77661691683949.7996235-CDS-L-elsbetiae_contig8936:7046..7766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8936 7047..7766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.47068-UTR-L-elsbetiae_contig8936:7766..81111622816969.47068-UTR-L-elsbetiae_contig8936:7766..8111Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8936 7767..8111 +
1691683949.8096983-UTR-L-elsbetiae_contig8936:7766..81111691683949.8096983-UTR-L-elsbetiae_contig8936:7766..8111Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8936 7767..8111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8936.17950.1prot_L-elsbetiae_contig8936.17950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8936 7047..7766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8936.17950.1

>prot_L-elsbetiae_contig8936.17950.1 ID=prot_L-elsbetiae_contig8936.17950.1|Name=mRNA_L-elsbetiae_contig8936.17950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
QAQRYSGPPLRPSWRLQLLEAAAAACRRCRQSLRLTLPSGGARGLNVRLA
LSPGGARRLPELKCRGVDPLHKLQRRRKARAFALGGGHILPQPHHRRHRR
RRYPRPPQTVRRWSPFDPLRPLAAARRVTSRFSSHHPVAPPLQTLTWAAA
STCPPPYLGRRLRHPRHLRLPSQFPPRPPPPPPLPSPPASPRTAARRRRC
PCRTRCWNRPRSRRRPPPPARENRPRRQRQRRRRRPRST*
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mRNA from alignment at L-elsbetiae_contig8936:7047..8111+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8936.17950.1 ID=mRNA_L-elsbetiae_contig8936.17950.1|Name=mRNA_L-elsbetiae_contig8936.17950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1065bp|location=Sequence derived from alignment at L-elsbetiae_contig8936:7047..8111+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTCAGCGATACAGCGGTCCGCCTCTCCGGCCATCGTGGCGGCTGCA
GCTTCTGGAGGCTGCTGCTGCCGCTTGTCGCCGGTGCAGGCAGAGCCTTC
GGCTGACTCTTCCCTCTGGGGGTGCTCGCGGACTGAACGTTCGGCTGGCT
CTTTCCCCTGGGGGTGCTCGCAGACTGCCGGAGCTGAAGTGTCGTGGCGT
GGACCCCCTCCACAAGCTCCAGCGCCGTCGGAAGGCTCGGGCGTTTGCGC
TCGGGGGGGGGCATATCCTGCCGCAGCCACACCACCGCCGCCATCGCCGC
CGCCGTTACCCTCGGCCTCCCCAGACTGTTCGCCGTTGGTCCCCTTTTGA
CCCTCTTCGTCCTCTTGCTGCTGCACGGCGTGTGACATCTCGTTTCTCAT
CGCACCATCCTGTTGCTCCTCCGCTCCAGACCCTAACGTGGGCTGCTGCA
TCCACATGCCCCCCTCCTTATCTTGGTCGCCGTCTTCGTCATCCTCGTCA
TCTTCGTCTGCCGTCTCAGTTTCCTCCCCGTCCTCCTCCTCCTCCTCCTC
TTCCCTCGCCGCCAGCATCTCCGCGTACCGCTGCTCGTCGCCGTCGGTGT
CCATGTCGGACCCGGTGTTGGAATCGGCCTCGGTCACGCCGCCGTCCGCC
GCCACCGGCGCGAGAGAATCGTCCCCGGCGGCAGCGACAACGCCGTCGTC
GCCGGCCGCGCTCGACCTGATCATATTTAACGCGAAATCTTCCACCCAGT
CCTCCGACACGTCCATGCCGTCGGTCTCGCTCTGCTGCTGCACTACGGTT
TCGTTTTCCTCGTCGATAACCTCCGGCCGAGCCTCTTCTTCTTGACACTC
GCCGCCGCCGCCGCCATCGCCATCGCCAGTTTCGGTCGCGGCCGCCGCTG
CGGCCGCCGCCGCCGCTGGGTGGGCCTCGGAGGAACCGTTCGCGCAGTCT
TGCGCCTCGCCCATCGAGGAAGCTGTTGCTGTTGCGGGGCTTTGCTTCCC
GTCCTCTCCGCCCTCTCCGTTCCCTGGCGAAAGCTGCTGTGCTTCGTGCT
CGACTTGCAGACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8936:7047..8111+

>mRNA_L-elsbetiae_contig8936.17950.1 ID=mRNA_L-elsbetiae_contig8936.17950.1|Name=mRNA_L-elsbetiae_contig8936.17950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig8936:7047..8111+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTCAGCGATACAGCGGTCCGCCTCTCCGGCCATCGTGGCGGCTGCA
GCTTCTGGAGGCTGCTGCTGCCGCTTGTCGCCGGTGCAGGCAGAGCCTTC
GGCTGACTCTTCCCTCTGGGGGTGCTCGCGGACTGAACGTTCGGCTGGCT
CTTTCCCCTGGGGGTGCTCGCAGACTGCCGGAGCTGAAGTGTCGTGGCGT
GGACCCCCTCCACAAGCTCCAGCGCCGTCGGAAGGCTCGGGCGTTTGCGC
TCGGGGGGGGGCATATCCTGCCGCAGCCACACCACCGCCGCCATCGCCGC
CGCCGTTACCCTCGGCCTCCCCAGACTGTTCGCCGTTGGTCCCCTTTTGA
CCCTCTTCGTCCTCTTGCTGCTGCACGGCGTGTGACATCTCGTTTCTCAT
CGCACCATCCTGTTGCTCCTCCGCTCCAGACCCTAACGTGGGCTGCTGCA
TCCACATGCCCCCCTCCTTATCTTGGTCGCCGTCTTCGTCATCCTCGTCA
TCTTCGTCTGCCGTCTCAGTTTCCTCCCCGTCCTCCTCCTCCTCCTCCTC
TTCCCTCGCCGCCAGCATCTCCGCGTACCGCTGCTCGTCGCCGTCGGTGT
CCATGTCGGACCCGGTGTTGGAATCGGCCTCGGTCACGCCGCCGTCCGCC
GCCACCGGCGCGAGAGAATCGTCCCCGGCGGCAGCGACAACGCCGTCGTC
GCCGGCCGCGCTCGACCTGACAGGCTCAGCGATACAGCGGTCCGCCTCTC
CGGCCATCGTGGCGGCTGCAGCTTCTGGAGGCTGCTGCTGCCGCTTGTCG
CCGGTGCAGGCAGAGCCTTCGGCTGACTCTTCCCTCTGGGGGTGCTCGCG
GACTGAACGTTCGGCTGGCTCTTTCCCCTGGGGGTGCTCGCAGACTGCCG
GAGCTGAAGTGTCGTGGCGTGGACCCCCTCCACAAGCTCCAGCGCCGTCG
GAAGGCTCGGGCGTTTGCGCTCGGGGGGGGGCATATCCTGCCGCAGCCAC
ACCACCGCCGCCATCGCCGCCGCCGTTACCCTCGGCCTCCCCAGACTGTT
CGCCGTTGGTCCCCTTTTGACCCTCTTCGTCCTCTTGCTGCTGCACGGCG
TGTGACATCTCGTTTCTCATCGCACCATCCTGTTGCTCCTCCGCTCCAGA
CCCTAACGTGGGCTGCTGCATCCACATGCCCCCCTCCTTATCTTGGTCGC
CGTCTTCGTCATCCTCGTCATCTTCGTCTGCCGTCTCAGTTTCCTCCCCG
TCCTCCTCCTCCTCCTCCTCTTCCCTCGCCGCCAGCATCTCCGCGTACCG
CTGCTCGTCGCCGTCGGTGTCCATGTCGGACCCGGTGTTGGAATCGGCCT
CGGTCACGCCGCCGTCCGCCGCCACCGGCGCGAGAGAATCGTCCCCGGCG
GCAGCGACAACGCCGTCGTCGCCGGCCGCGCTCGACCTGA
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