mRNA_L-elsbetiae_contig893.17945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig893.17945.1
Unique NamemRNA_L-elsbetiae_contig893.17945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-7
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   91 CAGILNGSA--CCGETCGECGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIID 261
            C G+L+G    CC  +CGECGG  CS R  G   CCT+ I   G++C DT G  PCI+D
Sbjct:  453 CNGVLSGMGYYCCAASCGECGGEGCSKRRGGENGCCTKAIQFGGVMCEDTGGQAPCILD 511
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BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-7
Identity = 41/100 (41.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   13 VDAEDFGPVWAARYQRRLATTSSEAMCAGILNGSA--CCGETCGE-CGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIIDGDPEPPPPGSDATP 303
            V+A    P      +  +    + A C GI +G    CC  +CGE CGG  CS +  G E CCT  I +SGILC+DT G PPC I  + E  PP S   P
Sbjct:  700 VEAVPVTPEGTPSPEAAVPVVPAPATCLGIPSGLGQFCCSLSCGEGCGGVGCSDKPGGKEGCCTHAIEESGILCADTGGEPPCRIPPEDETAPPPSPVVP 799
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BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: A0A813AJ06_SYMMI (Hypothetical protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A813AJ06_SYMMI)

HSP 1 Score: 57.8 bits (138), Expect = 1.000e-5
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   88 MCAGILNGSACCGETCGECGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIIDGD 267
            +C GI +   CC ++CG CGG ACS    G+E+CC R I+ SG  CS    APPC + GD
Sbjct:  131 VCDGIPSTPVCCPDSCGSCGGEACSNFPGGSENCCHRPIVGSGRKCS-ADTAPPCAMYGD 189
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BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.890e-5
Identity = 30/58 (51.72%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   94 AGILNGSACCGETCGECGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIIDGD 267
            AG  N  ACC   CG CGG  CS  G GAE CCT  I+ +   CS+  GA PCI+D D
Sbjct:  386 AGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSE-KGAAPCIMDTD 442
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BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: A0A812P0G7_9DINO (SPON1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812P0G7_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 2.990e-5
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   88 MCAGILNGSACCGETCGECGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIIDGD 267
            +C GI +   CC ++CG CGG ACS    G+E+CC R I+ SG  CS    APPC + GD
Sbjct:  131 VCDGIPSTPVCCPDSCGSCGGEACSNFPGGSENCCHRPIVGSGRKCS-ADTAPPCAMYGD 189
[Close]
BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.490e-5
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   94 AGILNGSACCGETCGECGGPACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIID 261
            AG     ACC   CG CGG  CS  G GAE CCT  I+ +G  CS+  GA PCI+D
Sbjct:  405 AGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSE-KGAAPCIMD 459
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig893.17945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K1D2_9PHAE1.240e-749.15Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D7FJN8_ECTSI1.320e-741.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813AJ06_SYMMI1.000e-548.33Hypothetical protein n=4 Tax=Symbiodinium TaxID=29... [more]
D7FY01_ECTSI2.890e-551.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A812P0G7_9DINO2.990e-548.33SPON1 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A6H5JP22_9PHAE3.490e-551.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig893contigL-elsbetiae_contig893:25741..27275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D7FJN8
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size1191
Cds size1191
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.2471309-CDS-L-elsbetiae_contig893:25740..266691622816969.2471309-CDS-L-elsbetiae_contig893:25740..26669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 25741..26669 -
1691683949.6603577-CDS-L-elsbetiae_contig893:25740..266691691683949.6603577-CDS-L-elsbetiae_contig893:25740..26669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 25741..26669 -
1622816969.259258-CDS-L-elsbetiae_contig893:27013..272751622816969.259258-CDS-L-elsbetiae_contig893:27013..27275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 27014..27275 -
1691683949.6748242-CDS-L-elsbetiae_contig893:27013..272751691683949.6748242-CDS-L-elsbetiae_contig893:27013..27275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 27014..27275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig893.17945.1prot_L-elsbetiae_contig893.17945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig893 25741..27275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig893.17945.1

>prot_L-elsbetiae_contig893.17945.1 ID=prot_L-elsbetiae_contig893.17945.1|Name=mRNA_L-elsbetiae_contig893.17945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=397bp
GSIKVDAEDFGPVWAARYQRRLATTSSEAMCAGILNGSACCGETCGECGG
PACSGRGNGAEDCCTREILDSGILCSDTSGAPPCIIDGDPEPPPPGSDAT
PAPETLEPTPSPVTPETPSPVTPETPSTATPETPSPVTPETPSPVTPETP
SPVSPETPSPVTPETPSPVTPETPSPVTPETPSPVTPETPSPVTPETPSP
VTPETPSPVTPETPSPVTPETPSPVTPETPSPVTPETPSPVTPETPSPVT
PETPSPVTPEMPSPVTPETPSPVAPETPSPETPEPTPIPTPGPATLEPTL
MPTPEPATPEPTTPEPTLIPSPEPTSPEPVPPVPVLPTPIPVAAPPVRVT
PSPVTPAPDQAAPGTGGPVAPPGSPGTPTAAPPSERTVEPTLAPIA*
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mRNA from alignment at L-elsbetiae_contig893:25741..27275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig893.17945.1 ID=mRNA_L-elsbetiae_contig893.17945.1|Name=mRNA_L-elsbetiae_contig893.17945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1535bp|location=Sequence derived from alignment at L-elsbetiae_contig893:25741..27275- (Laminarionema elsbetiae ELsaHSoW15)
GGAAGCATCAAAGTTGACGCCGAAGATTTCGGCCCCGTTTGGGCGGCCAG
GTATCAGCGCAGATTGGCCACCACCTCTAGCGAGGCTATGTGCGCCGGAA
TCCTGAACGGCAGCGCGTGCTGCGGCGAAACGTGCGGCGAGTGCGGAGGG
CCGGCTTGTTCCGGGAGGGGAAACGGTGCCGAGGATTGCTGCACAAGAGA
GATTCTGGACAGCGGTATCCTGTGCTCGGATACCAGTGGGGCGCCCCCGT
GCATAATAGATGGTGAGGGATGAGCATTCAGAGATGATCGGTGTTTTTGC
GACCGGGGGCACCGCGATTCCTGTGTTATGGCAGATGGCTGTGTGTATTA
TTTGTGGAAGGGCGATTCCTAGATCGCTACAAAGTGTTGCCTGCGCGAAT
CCAACACGTTGCTCTCGGCAGCCCCACCTAACGGAACACCAACATGTTCG
ATCCAAAAGACGGGGATCCCACCGATCACCAAGCTAACGCCCGCCCGCTC
TCCCTTTTCCTCTGATTCATAAGGCGCTTTACCATTCCCATCGGGGCACG
CTAAACGAGACCCTCTGCCGTTGCTACATACGCATCTGGTTCTTCTTCCG
TTTCAGGTGATCCGGAACCACCACCTCCCGGGTCTGATGCCACGCCTGCC
CCCGAAACGCTCGAGCCGACGCCATCACCAGTAACGCCTGAGACGCCATC
ACCGGTAACGCCTGAGACACCATCAACGGCAACGCCTGAAACGCCATCAC
CGGTAACGCCTGAGACGCCATCACCGGTAACGCCTGAGACACCATCACCG
GTCTCGCCAGAGACACCATCACCGGTAACGCCTGAGACGCCATCACCGGT
AACGCCTGAGACGCCATCACCGGTAACGCCTGAGACACCATCACCGGTAA
CGCCAGAGACACCATCACCGGTAACGCCTGAGACGCCATCACCGGTAACA
CCTGAGACGCCATCACCGGTAACGCCTGAGACGCCATCACCAGTAACGCC
TGAGACGCCATCACCGGTAACACCTGAGACGCCATCACCGGTAACGCCTG
AGACACCATCACCGGTGACACCTGAGACGCCATCACCGGTAACGCCTGAG
ACACCATCACCGGTGACACCTGAGATGCCATCACCGGTAACGCCCGAAAC
GCCATCACCAGTTGCGCCAGAGACACCATCACCGGAAACGCCTGAGCCTA
CTCCGATTCCTACTCCTGGGCCCGCTACGCTTGAGCCTACCTTAATGCCT
ACGCCTGAACCTGCCACGCCTGAGCCTACTACGCCTGAGCCTACTCTGAT
ACCTTCCCCTGAGCCTACTTCTCCTGAGCCTGTTCCGCCGGTGCCGGTGC
TTCCTACGCCAATCCCCGTTGCGGCGCCTCCGGTGCGGGTCACGCCGTCC
CCTGTTACACCCGCCCCGGACCAAGCAGCTCCAGGAACCGGTGGCCCCGT
CGCGCCTCCTGGGTCGCCGGGGACACCAACCGCCGCTCCGCCTTCTGAAC
GTACGGTCGAGCCAACACTGGCGCCAATCGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig893:25741..27275-

>mRNA_L-elsbetiae_contig893.17945.1 ID=mRNA_L-elsbetiae_contig893.17945.1|Name=mRNA_L-elsbetiae_contig893.17945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2382bp|location=Sequence derived from alignment at L-elsbetiae_contig893:25741..27275- (Laminarionema elsbetiae ELsaHSoW15)
GGAAGCATCAAAGTTGACGCCGAAGATTTCGGCCCCGTTTGGGCGGCCAG
GTATCAGCGCAGATTGGCCACCACCTCTAGCGAGGCTATGTGCGCCGGAA
TCCTGAACGGCAGCGCGTGCTGCGGCGAAACGTGCGGCGAGTGCGGAGGG
CCGGCTTGTTCCGGGAGGGGAAACGGTGCCGAGGATTGCTGCACAAGAGA
GATTCTGGACAGCGGTATCCTGTGCTCGGATACCAGTGGGGCGCCCCCGT
GCATAATAGATGGGAAGCATCAAAGTTGACGCCGAAGATTTCGGCCCCGT
TTGGGCGGCCAGGTATCAGCGCAGATTGGCCACCACCTCTAGCGAGGCTA
TGTGCGCCGGAATCCTGAACGGCAGCGCGTGCTGCGGCGAAACGTGCGGC
GAGTGCGGAGGGCCGGCTTGTTCCGGGAGGGGAAACGGTGCCGAGGATTG
CTGCACAAGAGAGATTCTGGACAGCGGTATCCTGTGCTCGGATACCAGTG
GGGCGCCCCCGTGCATAATAGATGGTGATCCGGAACCACCACCTCCCGGG
TCTGATGCCACGCCTGCCCCCGAAACGCTCGAGCCGACGCCATCACCAGT
AACGCCTGAGACGCCATCACCGGTAACGCCTGAGACACCATCAACGGCAA
CGCCTGAAACGCCATCACCGGTAACGCCTGAGACGCCATCACCGGTAACG
CCTGAGACACCATCACCGGTCTCGCCAGAGACACCATCACCGGTAACGCC
TGAGACGCCATCACCGGTAACGCCTGAGACGCCATCACCGGTAACGCCTG
AGACACCATCACCGGTAACGCCAGAGACACCATCACCGGTAACGCCTGAG
ACGCCATCACCGGTAACACCTGAGACGCCATCACCGGTAACGCCTGAGAC
GCCATCACCAGTAACGCCTGAGACGCCATCACCGGTAACACCTGAGACGC
CATCACCGGTAACGCCTGAGACACCATCACCGGTGACACCTGAGACGCCA
TCACCGGTAACGCCTGAGACACCATCACCGGTGACACCTGAGATGCCATC
ACCGGTAACGCCCGAAACGCCATCACCAGTTGCGCCAGAGACACCATCAC
CGGAAACGCCTGAGCCTACTCCGATTCCTACTCCTGGGCCCGCTACGCTT
GAGCCTACCTTAATGCCTACGCCTGAACCTGCCACGCCTGAGCCTACTAC
GCCTGAGCCTACTCTGATACCTTCCCCTGAGCCTACTTCTCCTGAGCCTG
TTCCGCCGGTGCCGGTGCTTCCTACGCCAATCCCCGTTGCGGCGCCTCCG
GTGCGGGTCACGCCGTCCCCTGTTACACCCGCCCCGGACCAAGCAGCTCC
AGGAACCGGTGGCCCCGTCGCGCCTCCTGGGTCGCCGGGGACACCAACCG
CCGCTCCGCCTTCTGAACGTACGGTCGAGCCAACACTGGCGCCAATCGCG
TGAGTGATCCGGAACCACCACCTCCCGGGTCTGATGCCACGCCTGCCCCC
GAAACGCTCGAGCCGACGCCATCACCAGTAACGCCTGAGACGCCATCACC
GGTAACGCCTGAGACACCATCAACGGCAACGCCTGAAACGCCATCACCGG
TAACGCCTGAGACGCCATCACCGGTAACGCCTGAGACACCATCACCGGTC
TCGCCAGAGACACCATCACCGGTAACGCCTGAGACGCCATCACCGGTAAC
GCCTGAGACGCCATCACCGGTAACGCCTGAGACACCATCACCGGTAACGC
CAGAGACACCATCACCGGTAACGCCTGAGACGCCATCACCGGTAACACCT
GAGACGCCATCACCGGTAACGCCTGAGACGCCATCACCAGTAACGCCTGA
GACGCCATCACCGGTAACACCTGAGACGCCATCACCGGTAACGCCTGAGA
CACCATCACCGGTGACACCTGAGACGCCATCACCGGTAACGCCTGAGACA
CCATCACCGGTGACACCTGAGATGCCATCACCGGTAACGCCCGAAACGCC
ATCACCAGTTGCGCCAGAGACACCATCACCGGAAACGCCTGAGCCTACTC
CGATTCCTACTCCTGGGCCCGCTACGCTTGAGCCTACCTTAATGCCTACG
CCTGAACCTGCCACGCCTGAGCCTACTACGCCTGAGCCTACTCTGATACC
TTCCCCTGAGCCTACTTCTCCTGAGCCTGTTCCGCCGGTGCCGGTGCTTC
CTACGCCAATCCCCGTTGCGGCGCCTCCGGTGCGGGTCACGCCGTCCCCT
GTTACACCCGCCCCGGACCAAGCAGCTCCAGGAACCGGTGGCCCCGTCGC
GCCTCCTGGGTCGCCGGGGACACCAACCGCCGCTCCGCCTTCTGAACGTA
CGGTCGAGCCAACACTGGCGCCAATCGCGTGA
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