mRNA_L-elsbetiae_contig893.17943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig893.17943.1
Unique NamemRNA_L-elsbetiae_contig893.17943.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig893.17943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig893contigL-elsbetiae_contig893:17483..21481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1735
Cds size1353
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.079506-UTR-L-elsbetiae_contig893:17482..178391622816969.079506-UTR-L-elsbetiae_contig893:17482..17839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig893 17483..17839 -
1691683949.5393376-UTR-L-elsbetiae_contig893:17482..178391691683949.5393376-UTR-L-elsbetiae_contig893:17482..17839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig893 17483..17839 -
1622816969.1481667-UTR-L-elsbetiae_contig893:21456..214811622816969.1481667-UTR-L-elsbetiae_contig893:21456..21481Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig893 21457..21481 -
1691683949.5918174-UTR-L-elsbetiae_contig893:21456..214811691683949.5918174-UTR-L-elsbetiae_contig893:21456..21481Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig893 21457..21481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.0943148-CDS-L-elsbetiae_contig893:17839..183601622816969.0943148-CDS-L-elsbetiae_contig893:17839..18360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 17840..18360 -
1691683949.5479796-CDS-L-elsbetiae_contig893:17839..183601691683949.5479796-CDS-L-elsbetiae_contig893:17839..18360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 17840..18360 -
1622816969.1053267-CDS-L-elsbetiae_contig893:18922..193681622816969.1053267-CDS-L-elsbetiae_contig893:18922..19368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 18923..19368 -
1691683949.5561435-CDS-L-elsbetiae_contig893:18922..193681691683949.5561435-CDS-L-elsbetiae_contig893:18922..19368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 18923..19368 -
1622816969.1168046-CDS-L-elsbetiae_contig893:20124..202131622816969.1168046-CDS-L-elsbetiae_contig893:20124..20213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 20125..20213 -
1691683949.5644197-CDS-L-elsbetiae_contig893:20124..202131691683949.5644197-CDS-L-elsbetiae_contig893:20124..20213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 20125..20213 -
1622816969.127012-CDS-L-elsbetiae_contig893:20706..209851622816969.127012-CDS-L-elsbetiae_contig893:20706..20985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 20707..20985 -
1691683949.5728157-CDS-L-elsbetiae_contig893:20706..209851691683949.5728157-CDS-L-elsbetiae_contig893:20706..20985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 20707..20985 -
1622816969.137684-CDS-L-elsbetiae_contig893:21438..214561622816969.137684-CDS-L-elsbetiae_contig893:21438..21456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 21439..21456 -
1691683949.581529-CDS-L-elsbetiae_contig893:21438..214561691683949.581529-CDS-L-elsbetiae_contig893:21438..21456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 21439..21456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig893.17943.1prot_L-elsbetiae_contig893.17943.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig893 17840..21456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig893.17943.1

>prot_L-elsbetiae_contig893.17943.1 ID=prot_L-elsbetiae_contig893.17943.1|Name=mRNA_L-elsbetiae_contig893.17943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=451bp
MMSVNKGGVGVDVEEAAVGHEDDAASLARGGGSGHFSPHHPRFGTAARKG
RLYGKRVVTSGTLSVESLSFYRQEDQQGPGGAEDGSQTDCDDGSIPQGQF
TYRNPMFWEKEAGSRSSGDLARHYRDSTGDSSSESSSDFTSGNEFFNPMR
GQGSRPPSSRESEDKDRQPFSDPKSDRGAERKKLAPFSSFLSYSRSLSQT
TPTHATERGPAERGESEGTIASRLSVHRRHPSNRTISSMSSGASVGRFPR
DYRQLLLKQSGSFSSSAVPSAAVGGRPGGRQSRSRAVGDHTPTILPAPLP
LGTGGGASDGTGDGGLNSLDYSDGAAAPSAATSATSSRGGWSSRALVRPT
QPLLCGGSPLSQCSSWVMGSRSGSFASAAGRTLDTAGSSSSLGSSLFDQS
EENHQSARGSYGQEKGQPRPSPTNSLMSGSSSLREAWMDAADSIDEPTGR
*
back to top

mRNA from alignment at L-elsbetiae_contig893:17483..21481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig893.17943.1 ID=mRNA_L-elsbetiae_contig893.17943.1|Name=mRNA_L-elsbetiae_contig893.17943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3999bp|location=Sequence derived from alignment at L-elsbetiae_contig893:17483..21481- (Laminarionema elsbetiae ELsaHSoW15)
CGACAGCATTCCAATCGCGCCAGTCATGATGAGCGTGAACAAGGTACCGG
GCCGTGCTTCTTGATGCTTGGAGTGGGCGGGCGTAGCGAGGTTGCCGGGT
ATGGTAGAGGAAGGGTGGGGCGGGTGTTGTTTGATACTTGCCGGCGGTTG
CCCTAAGTGGTCGAGTTTGAAAGGGAGTCTTGACCGGGCGTCTCCTTGTT
GGGAAGTATACATGATACATGGATACCGCTTTCTCCCGCTCCTGGTCCAA
TAGAGCCCCCGTCAGAAAGTAGCACCGGCGCTCTTTTCACGTTCTCGTCA
GAACGCCGTGGAGTGGGAGAAGTAGGCAACTCTAGGTGCCTGCTCGACTA
CCTACCTACGGTGCGGGACAACAAGTGGTGCTGCAGCCTACCCCCCGTCT
TACACATCTACACAGACAAGATCCAACACCCGTGGGCCGTCCCCCCTCTT
TGCTTGCTATCCACTGAAAATTGCTGACCCCACCATCAAGGAGCAGGGCG
GCGTCGGCGTGGACGTGGAAGAGGCAGCAGTCGGCCACGAGGACGATGCC
GCGTCGCTAGCTCGCGGCGGAGGCAGCGGCCACTTCTCGCCTCACCACCC
GAGATTCGGAACCGCGGCGCGGAAGGGTAGGCTGTACGGGAAGAGGGTGG
TGACTTCTGGAACGCTGTCCGTGGAAAGTTTAAGTTTTTACAGGCAGGAG
GACCAGCAGGGCCCCGGAGGAGCCGAAGACGGCTCACAGACAGATTGCGA
CGATGGCAGTATTCCTCAAGGCCAGGTACGGCTGTGCGCAGATCGAGGGG
GTTAGGGAAGGAGGGGGGGAGGAAATACGGAAGGAGAAAGAGAAGGAAGG
CGAGGGGTCGCGGCGAGGTGCCGAGTCGTTTCGATGTACGCGGCTTTTTT
ACGAGATGTTGGGAGCCCCCAAACAAACAGGCGGCTGGTTTTGGAGTCAA
CAGTGGAACGGAACCTCGCCTATACTCTGTGCTTGCCGCTGGCAGCGCGC
GCGAGCCAGATATTCGTCGTTACTTTCCCTGCACGCGCTGTCTTGGAACG
TCCAAAGGCTGGGTGTGACTCTGGTCGCCCCCCCCGGGCTGCAATGCTGC
TGCCTCCTGGCCTCTCCGGATGTTTTTGCTCTCCTCGTGGTCACGCTTTC
GCGTTTTCCTGGTGCCCATTTTCGTTGGACAGGACGTCCGGCTCACCCTT
TCACTTCCCCACGACCGCTGCTGTTTTCCACGCACAATGTTAATATTTGC
GCCATCATGGTAAACCAGTTCACCTACCGCAACCCCATGTTCTGGGAGAA
AGAAGCCGGGAGCCGGAGCTCTGGTGATCTCGCCCGGCACTACCGCGACA
GCACCGGGTGAGCTAACGAACGAGCTCAGCAACTATAGTCAGGGCTTGAC
TATCACGGGCGATCGATGGCCCTTCCGTGCTGTGATCTGGCAGAAAAAAG
CACGCCGTGTACGGTGTGGTCCGAGAGCCCGCTGGATAGGTTCGGCTGTA
TGTTGTGCTCTGTAGCAAAGCGCCACGATGTAACATCGCGCCCGGCTTCC
CGTGTCCGCCGAGGTGGTCGTACGCGATTAAATCGTGCGAAATGTTATGC
CGCGCGACCGAAGTCTCCGTCGTGCCGTATTGTCGGAGATCCCTCCTAGC
GTAGCGAACCTTGACAGCCAGCCCCTCAGTCAAGAACTTGATCAATTCAA
CGGTAGTATTGATGTCGGTTGGCAATGAAGGAGCTCGTGCGCCATGTAGG
CACCTAAATACTGTGTATTGCGCAACCACCTTCGTTGTCTAGCTGAGCGC
TGACGTTATCATCGGGACAAAGAGGCTGCCTTGAGCTAAACAGTGGGATG
GCACAATTACAGGTTGGTTGAGCGGGGGTGCTAAGCCCAAGTGATTCCGC
AAGACGGCGCGGCATGCCGACCAGATCTGGCCACATGCCCCCCAACCCAT
TTTAGGCCAGCCAATCCCTGAGCGTAGCGGCGGGCGCATGATTAATCCGA
CCGACAACATTTCTTCTAACTACTGCTCCATTCTCCACCACGCCCATCCA
CTAAACCCAATCTCCAACATGACCTATGTTTATGCCGGCCTACTGCTCGA
TCGAACAAAGCAGGGACTCCTCGAGCGAGTCGTCTTCCGACTTCACGTCC
GGAAACGAGTTTTTCAACCCTATGCGTGGCCAAGGAAGCCGCCCGCCTTC
GTCGCGAGAGTCCGAGGATAAGGATCGCCAGCCCTTCAGCGACCCGAAAT
CCGACAGAGGTGCGGAGCGGAAGAAGCTGGCGCCCTTCTCGTCATTCCTC
AGCTACAGCCGCTCGCTCTCGCAGACCACGCCCACCCACGCTACCGAAAG
GGGCCCGGCCGAACGGGGCGAGTCAGAAGGGACCATCGCAAGCAGACTGT
CCGTGCATCGCCGGCACCCCTCTAACAGGACCATCTCTAGCATGTCCTCG
GGTGCAAGTGTGGGGCGATTCCCACGTGATTACCGCCAGCTTCTACTCAA
GCAGTCGGGTAGCTTCTCCTCCAGCGCCGTCCCTAGCGCTGCGGTGGGCG
GCCGTCCAGGTGAGCAAGGGTAAAGAGGGGTTGGAGGAATAACTCGGTTT
GCCTGCTCGCTTCGAGCGCCCTGAACTCCCCCTTGCTACACGCTGCTAGG
TGCGTCTCTGCATCATCGTGGCAACAGCGGGGGTCCCACTGGTGCAAGGC
CTCGCCCATCTGGTTATCCCAACATGGCCGAGGACAAGGCAGCGGTCGCG
GATCGTAACGTTTGACAGCAACAGATGTTTTAGTCCAGTCGCGCATAAAT
TGAAAGCGATTTCGTTAGTTAATAAATACTTCGACTTTATTGTTGACGAG
GGTGGGGAGTGCTGAACCCTGCTCGCGATAAAAGCACGACACGCAGGCAC
CGCAGGAGGGGGTCCGACCCCCCCCTCCTGTGTGGCCCCGTTTGGATCGT
CTACCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACAAATGA
GCCAATGCAGGGAGGGAAATAAAGTATCTACTCTCAGCAGAAGGTGAAAC
CCTTTGTCGACCGCTGAGTTTCACTCTGTTCCTACTGCATCTTCCTTCCG
CCACCCCATTCGCTTGCACAGGCGGCAGGCAAAGCAGAAGCCGAGCTGTT
GGCGATCACACCCCCACCATTCTCCCGGCACCCTTGCCCCTGGGCACCGG
TGGCGGCGCTAGTGATGGGACCGGGGACGGAGGATTGAACAGTCTCGACT
ACAGCGACGGCGCCGCCGCCCCGAGCGCCGCAACAAGCGCTACCAGCAGT
CGCGGGGGCTGGTCATCTCGTGCGTTGGTACGTCCCACACAACCCTTGCT
GTGTGGCGGGTCCCCTCTGAGCCAGTGCTCGTCTTGGGTGATGGGGTCGC
GCTCGGGGTCCTTCGCCAGCGCCGCTGGGCGCACGTTAGACACGGCCGGA
TCTTCTTCCTCGTTGGGCTCATCGTTATTTGACCAAAGTGAAGAAAACCA
CCAAAGCGCCCGGGGCAGTTACGGCCAGGAGAAGGGGCAACCAAGACCAT
CACCAACGAATAGTCTTATGAGTGGGTCGTCCTCATTAAGGGAAGCTTGG
ATGGATGCAGCTGATTCCATAGACGAGCCCACTGGGCGGTGATCCGATAT
TTTTTGTTGGTATTTATTGATTTACATAGTGTCGTTAGCTACCACTGGAA
CCAATTATCAGGTGATTTTGTGTTTGTGCTGGATGGTACTTTAGATCTGT
TGATCTGTCGTTAACGCCACTGGGAATCCAACAGTCTAGTGTCTGTGTGT
GTTTACAGAGGCCTCGTAGATCATGTTCAGGAGTCGAGCCTATTATTTGT
GCAAACCGGGTTGAACATTTAGTGTCATCCAGGTTTCCTTCCTAAAGTTT
TTAGTTTCCTTTGTTTGGGGTGGCGATTCGGGGGCCTGGGTTGAACCAGG
ACCATACCACCACAAGGGAGATGGGAAATAAAAAAGGCAGTTTTTCGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig893:17483..21481-

>mRNA_L-elsbetiae_contig893.17943.1 ID=mRNA_L-elsbetiae_contig893.17943.1|Name=mRNA_L-elsbetiae_contig893.17943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2706bp|location=Sequence derived from alignment at L-elsbetiae_contig893:17483..21481- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAGCGTGAACAAGATGATGAGCGTGAACAAGGGCGGCGTCGGCGT
GGACGTGGAAGAGGCAGCAGTCGGCCACGAGGACGATGCCGCGTCGCTAG
CTCGCGGCGGAGGCAGCGGCCACTTCTCGCCTCACCACCCGAGATTCGGA
ACCGCGGCGCGGAAGGGTAGGCTGTACGGGAAGAGGGTGGTGACTTCTGG
AACGCTGTCCGTGGAAAGTTTAAGTTTTTACAGGCAGGAGGACCAGCAGG
GCCCCGGAGGAGCCGAAGACGGCTCACAGACAGATTGCGACGATGGCAGT
ATTCCTCAAGGCCAGGGCGGCGTCGGCGTGGACGTGGAAGAGGCAGCAGT
CGGCCACGAGGACGATGCCGCGTCGCTAGCTCGCGGCGGAGGCAGCGGCC
ACTTCTCGCCTCACCACCCGAGATTCGGAACCGCGGCGCGGAAGGGTAGG
CTGTACGGGAAGAGGGTGGTGACTTCTGGAACGCTGTCCGTGGAAAGTTT
AAGTTTTTACAGGCAGGAGGACCAGCAGGGCCCCGGAGGAGCCGAAGACG
GCTCACAGACAGATTGCGACGATGGCAGTATTCCTCAAGGCCAGTTCACC
TACCGCAACCCCATGTTCTGGGAGAAAGAAGCCGGGAGCCGGAGCTCTGG
TGATCTCGCCCGGCACTACCGCGACAGCACCGGTTCACCTACCGCAACCC
CATGTTCTGGGAGAAAGAAGCCGGGAGCCGGAGCTCTGGTGATCTCGCCC
GGCACTACCGCGACAGCACCGGGGACTCCTCGAGCGAGTCGTCTTCCGAC
TTCACGTCCGGAAACGAGTTTTTCAACCCTATGCGTGGCCAAGGAAGCCG
CCCGCCTTCGTCGCGAGAGTCCGAGGATAAGGATCGCCAGCCCTTCAGCG
ACCCGAAATCCGACAGAGGTGCGGAGCGGAAGAAGCTGGCGCCCTTCTCG
TCATTCCTCAGCTACAGCCGCTCGCTCTCGCAGACCACGCCCACCCACGC
TACCGAAAGGGGCCCGGCCGAACGGGGCGAGTCAGAAGGGACCATCGCAA
GCAGACTGTCCGTGCATCGCCGGCACCCCTCTAACAGGACCATCTCTAGC
ATGTCCTCGGGTGCAAGTGTGGGGCGATTCCCACGTGATTACCGCCAGCT
TCTACTCAAGCAGTCGGGTAGCTTCTCCTCCAGCGCCGTCCCTAGCGCTG
CGGTGGGCGGCCGTCCAGGGACTCCTCGAGCGAGTCGTCTTCCGACTTCA
CGTCCGGAAACGAGTTTTTCAACCCTATGCGTGGCCAAGGAAGCCGCCCG
CCTTCGTCGCGAGAGTCCGAGGATAAGGATCGCCAGCCCTTCAGCGACCC
GAAATCCGACAGAGGTGCGGAGCGGAAGAAGCTGGCGCCCTTCTCGTCAT
TCCTCAGCTACAGCCGCTCGCTCTCGCAGACCACGCCCACCCACGCTACC
GAAAGGGGCCCGGCCGAACGGGGCGAGTCAGAAGGGACCATCGCAAGCAG
ACTGTCCGTGCATCGCCGGCACCCCTCTAACAGGACCATCTCTAGCATGT
CCTCGGGTGCAAGTGTGGGGCGATTCCCACGTGATTACCGCCAGCTTCTA
CTCAAGCAGTCGGGTAGCTTCTCCTCCAGCGCCGTCCCTAGCGCTGCGGT
GGGCGGCCGTCCAGGCGGCAGGCAAAGCAGAAGCCGAGCTGTTGGCGATC
ACACCCCCACCATTCTCCCGGCACCCTTGCCCCTGGGCACCGGTGGCGGC
GCTAGTGATGGGACCGGGGACGGAGGATTGAACAGTCTCGACTACAGCGA
CGGCGCCGCCGCCCCGAGCGCCGCAACAAGCGCTACCAGCAGTCGCGGGG
GCTGGTCATCTCGTGCGTTGGTACGTCCCACACAACCCTTGCTGTGTGGC
GGGTCCCCTCTGAGCCAGTGCTCGTCTTGGGTGATGGGGTCGCGCTCGGG
GTCCTTCGCCAGCGCCGCTGGGCGCACGTTAGACACGGCCGGATCTTCTT
CCTCGTTGGGCTCATCGTTATTTGACCAAAGTGAAGAAAACCACCAAAGC
GCCCGGGGCAGTTACGGCCAGGAGAAGGGGCAACCAAGACCATCACCAAC
GAATAGTCTTATGAGTGGGTCGTCCTCATTAAGGGAAGCTTGGATGGATG
CAGCTGATTCCATAGACGAGCCCACTGGGCGGTGAGCGGCAGGCAAAGCA
GAAGCCGAGCTGTTGGCGATCACACCCCCACCATTCTCCCGGCACCCTTG
CCCCTGGGCACCGGTGGCGGCGCTAGTGATGGGACCGGGGACGGAGGATT
GAACAGTCTCGACTACAGCGACGGCGCCGCCGCCCCGAGCGCCGCAACAA
GCGCTACCAGCAGTCGCGGGGGCTGGTCATCTCGTGCGTTGGTACGTCCC
ACACAACCCTTGCTGTGTGGCGGGTCCCCTCTGAGCCAGTGCTCGTCTTG
GGTGATGGGGTCGCGCTCGGGGTCCTTCGCCAGCGCCGCTGGGCGCACGT
TAGACACGGCCGGATCTTCTTCCTCGTTGGGCTCATCGTTATTTGACCAA
AGTGAAGAAAACCACCAAAGCGCCCGGGGCAGTTACGGCCAGGAGAAGGG
GCAACCAAGACCATCACCAACGAATAGTCTTATGAGTGGGTCGTCCTCAT
TAAGGGAAGCTTGGATGGATGCAGCTGATTCCATAGACGAGCCCACTGGG
CGGTGA
back to top