mRNA_L-elsbetiae_contig8923.17939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8923.17939.1
Unique NamemRNA_L-elsbetiae_contig8923.17939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8923.17939.1 vs. uniprot
Match: D8LMI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-14
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 DVINVPDAALGCTPLHWASVTNRLDFMLLLLEAGARVDSRDYAGR 135
            DV+N+PDA LGCTPLHWA++ NR+DFMLLLL+ GA VDSRD+AGR
Sbjct:  109 DVVNMPDATLGCTPLHWAAMLNRVDFMLLLLDHGADVDSRDFAGR 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8923.17939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMI1_ECTSI1.210e-1475.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8923contigL-elsbetiae_contig8923:210..1846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_002830.1
Exons3
Model size498
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8923.17939.1prot_L-elsbetiae_contig8923.17939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8923 288..1771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816968.751622-UTR-L-elsbetiae_contig8923:209..2871622816968.751622-UTR-L-elsbetiae_contig8923:209..287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8923 210..287 +
1691683949.3510876-UTR-L-elsbetiae_contig8923:209..2871691683949.3510876-UTR-L-elsbetiae_contig8923:209..287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8923 210..287 +
1622816968.7995596-UTR-L-elsbetiae_contig8923:1771..18461622816968.7995596-UTR-L-elsbetiae_contig8923:1771..1846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8923 1772..1846 +
1691683949.3896046-UTR-L-elsbetiae_contig8923:1771..18461691683949.3896046-UTR-L-elsbetiae_contig8923:1771..1846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8923 1772..1846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816968.7640955-CDS-L-elsbetiae_contig8923:287..4381622816968.7640955-CDS-L-elsbetiae_contig8923:287..438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 288..438 +
1691683949.361155-CDS-L-elsbetiae_contig8923:287..4381691683949.361155-CDS-L-elsbetiae_contig8923:287..438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 288..438 +
1622816968.7746012-CDS-L-elsbetiae_contig8923:1189..13811622816968.7746012-CDS-L-elsbetiae_contig8923:1189..1381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 1190..1381 +
1691683949.371856-CDS-L-elsbetiae_contig8923:1189..13811691683949.371856-CDS-L-elsbetiae_contig8923:1189..1381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 1190..1381 +
1622816968.784987-CDS-L-elsbetiae_contig8923:1769..17711622816968.784987-CDS-L-elsbetiae_contig8923:1769..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 1770..1771 +
1691683949.380792-CDS-L-elsbetiae_contig8923:1769..17711691683949.380792-CDS-L-elsbetiae_contig8923:1769..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8923 1770..1771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8923.17939.1

>prot_L-elsbetiae_contig8923.17939.1 ID=prot_L-elsbetiae_contig8923.17939.1|Name=mRNA_L-elsbetiae_contig8923.17939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MLLLLEAGARVDSRDYAGRTPLYASAAFGAVDAVELLLERGAAVDSPDLR
GLTPLHAAAAGNHLDVAEELLSAGACVRLRSSVGCTARHVAEKQGHGPMA
RLLAPAAREEQEGA*
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mRNA from alignment at L-elsbetiae_contig8923:210..1846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8923.17939.1 ID=mRNA_L-elsbetiae_contig8923.17939.1|Name=mRNA_L-elsbetiae_contig8923.17939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1637bp|location=Sequence derived from alignment at L-elsbetiae_contig8923:210..1846+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTGATCAACGTCCCGGATGCTGCCCTGGGCTGCACCCCTCTGCACTG
GGCGAGCGTCACCAACCGGTTGGACTTCATGCTCTTGCTCCTAGAGGCGG
GTGCCCGCGTGGACTCTCGTGACTACGCCGGCCGTACTCCCCTCTATGCC
TCCGCGGCCTTCGGCGCCGTCGACGCCGTGGAGCTCCTCTTGGAGAGAGG
CGCAGCGGTCGATAGCCCCGATCTGAGAGGTATGATTTGATATATACATG
TGTGTATGAGATGAGCAGGAAGGAGCATTGCTGAAGAGTGTATGTGTACA
GACACCGATTTTGCGGCGTTTCCCCCCGGGTTTCTTTTTCACGCACAAGT
GCCGAGTAGCCGGTGACCCATAGTGACGCATACTCTTGCTGGCGCCTTTT
CGGTCATCTCGGCGAAGTGACTGGGCACGAATATTTTCGCAGCAGGGATA
AAAATTGTGTCCGAATCATTCGACGTGAGTTGGCAAGACCAGCGCAAAGC
CCTACTTACTTGGGTTCCAACCCTACAGTTGGGTCGTCGAGCCTGTCATG
GTGGAGGAAGCGGGCCAGTGGGGCCCACTTCGGATGAGCCAAAAATGAGA
GGGAAAACAAAAAAAAACTGTATCCGTCCGTTACTGCTGTAAATATGTAT
GGTACGCATGTATGTATGTATCATGGGAGGTAAACGGAATTCTCGCAGGA
TACATGACGACGGCATCGCCTAGCATAGTGAGGAGATGTCACACGGGCTC
GTCGTGTAATGTACAACAGCAGGAGTAGTACATGAGAGTTTTCATGTCAC
AACCCCCGAAGGTATCGAGTATGAAGGACCGCAACGCCTAACCTTCACGA
TCACATCCCGCCCGACCGGACCGAATCCGGGTCGATCCCGCGACTCCCAC
GATTCTCCATGCGAAGAACTCACCTCTCAACCCCCCCCCCGCCGCCGCCG
CCTCCCCCCCGTCCAATGCCCCCCCCCCAGGCCTCACCCCGCTGCACGCC
GCTGCTGCGGGAAACCACCTCGACGTCGCGGAAGAGCTGCTGTCGGCTGG
CGCCTGCGTCCGCCTTCGATCGAGCGTTGGTTGCACGGCTAGGCACGTCG
CCGAGAAGCAGGGTCACGGCCCCATGGCCAGACTCCTTGCTCCCGCCGCG
CGAGAAGAACAGGAAGGTGCGTGTACCGCAACGCGCTGGTAGTCTCGAAC
GTTGGGTGGCACAAGTATTTTACATAAGTATGTCTGCTCGCATATTTTTT
TACCATGTGTGCGGCCTTTTTTTATAATTTGTGGATTCGAACCAAGAGGA
ACTAGGGCAAGGGCGTACGCCGCCTTCGTGTAGACTAAATATGCATGTAG
AAAACTGAAAGATCTGCAGGCCTTTCTGCTCTTCGTCGATTTGTTGTCTG
GCTGGCATCGCACACGCACGCGCTGTGTAAAACGACTGCAGCAAGAGCAG
AGCAATGCACATGTTTTTTTGTGGTGTGTGCACGGACTGAAGAGTTCCCC
GCGCCCCCCTCGTACTTCTTTCTCCACCGCTCACAGGTTACCTCGTATCT
GTTCGCCCAGAGGAGACTATCGCGGAAGTCGGGGGAGGCGACCCCGTGTA
CTGGCTGTTCTCTCAGCTCAGGATGACGGTTGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8923:210..1846+

>mRNA_L-elsbetiae_contig8923.17939.1 ID=mRNA_L-elsbetiae_contig8923.17939.1|Name=mRNA_L-elsbetiae_contig8923.17939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig8923:210..1846+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTTGCTCCTAGAGGCGGGTGCCCGCGTGGACTCTCGTGACTACGC
CGGCCGTACTCCCCTCTATGCCTCCGCGGCCTTCGGCGCCGTCGACGCCG
TGGAGCTCCTCTTGGAGAGAGGCGCAGCGGTCGATAGCCCCGATCTGAGA
GATGCTCTTGCTCCTAGAGGCGGGTGCCCGCGTGGACTCTCGTGACTACG
CCGGCCGTACTCCCCTCTATGCCTCCGCGGCCTTCGGCGCCGTCGACGCC
GTGGAGCTCCTCTTGGAGAGAGGCGCAGCGGTCGATAGCCCCGATCTGAG
AGGCCTCACCCCGCTGCACGCCGCTGCTGCGGGAAACCACCTCGACGTCG
CGGAAGAGCTGCTGTCGGCTGGCGCCTGCGTCCGCCTTCGATCGAGCGTT
GGTTGCACGGCTAGGCACGTCGCCGAGAAGCAGGGTCACGGCCCCATGGC
CAGACTCCTTGCTCCCGCCGCGCGAGAAGAACAGGAAGGTGCGTGCCTCA
CCCCGCTGCACGCCGCTGCTGCGGGAAACCACCTCGACGTCGCGGAAGAG
CTGCTGTCGGCTGGCGCCTGCGTCCGCCTTCGATCGAGCGTTGGTTGCAC
GGCTAGGCACGTCGCCGAGAAGCAGGGTCACGGCCCCATGGCCAGACTCC
TTGCTCCCGCCGCGCGAGAAGAACAGGAAGGTGCGTAGAG
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