mRNA_L-elsbetiae_contig8913.17936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8913.17936.1 vs. uniprot
Match: D8LJK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK4_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 7.760e-145 Identity = 298/522 (57.09%), Postives = 339/522 (64.94%), Query Frame = 1 Query: 7 ILEGALLVLIGVLSPFWLPLPLYRAREAVAGQRRRLRLLGRSAGDGGGGEXXXDXEDGGGVKXXXXXXXXXXXXXXXXGKTASEKAP--TQPERRAAAAAVEGLPGLGRRYLDFIAQALGQGHEAAVAAAAAVTAPYGHGGLPRYSGGHPDNFFIDVSAFDEVVLTTEWEVDGFLAACMVFAVVTAEARRAAPVVPGGAERPYPLRTVIVGEGKAVQAEEALRAMRQTELIPPDCHVDVIEGCGPAAEAENWRHQEPAGGRGLHGKGREXXXXXXXXXXXXPGQGREGDVKSGGRSFFGSCSGLLLRSRVLRSVLGRWFWLPGARRDLHLARCARGRGGGKFDHVDLFVSGGFSGVFAGKGAGSEAPPRPLRRXXXXXXX-GGEGELDRGEVEEAMAAVSRVFVVQLDDLVGRYGFPRAIAPDRTPTLSAAMAGARGVLPAFLRRVIAASNHLALTEFPDRVAAATAAGRYANEELRVTASSIAAAALAEEPGIGRGRVAELGACMADLIASDFEALEAAGL 1563 +LEG L++LIGVLS FWLPLPLYR REAV +RRRLRLL +S GG + D K G+T A T + ++AAAA +G P LGRRYLDF+AQALGQ H AA AAA+ AP GLPR GGHP+ F+DVSA+DEVVLTTEWE DG LAAC++F+VVTAE +RA P G +RPYPLRT+IVGEGKA QA EAL AMR+T+L+PPDC VDV+E AA+ E K RE XXXXXXX RSF GSCS LLL +LRS L WL G RR L ARG+G G SG LRR GG+ EL R +VEEA+A V+RV VVQL+DLV YGFPRAIAPDRTPTL+AA+AGARGVLP+ LRR IAASNHLALTEFPD+VA+A AGRYANEELRVTASSIAAAA+AEEPG+GRGRVAELGACMADLIASDFEALE AGL Sbjct: 12 VLEGVLVLLIGVLSTFWLPLPLYRLREAVTCRRRRLRLLRQSEESGGKVDVGADS------KAIRPVGGRGAGNGGVDGQTTEGAAESLTGQDPKSAAAASDGFPDLGRRYLDFLAQALGQSHSAA---AAAIAAPDRRTGLPRNGGGHPEGCFVDVSAYDEVVLTTEWEADGLLAACLLFSVVTAETKRA-PFASDGTKRPYPLRTLIVGEGKASQAREALEAMRRTKLVPPDCRVDVLEPGEGAAKGE---------------KRREDRGIEXXXXXXXXXXXXXXXXDGVWRSFLGSCSMLLL---LLRSTLR---WLSGRRRGL-----ARGQGEG----XXXXXSG-----------------HSLRRQWHRRPSAGGDEELSREDVEEALARVNRVLVVQLEDLVRPYGFPRAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIKAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGL 476
BLAST of mRNA_L-elsbetiae_contig8913.17936.1 vs. uniprot
Match: A0A6H5KHY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY3_9PHAE) HSP 1 Score: 348 bits (893), Expect = 2.290e-110 Identity = 225/403 (55.83%), Postives = 259/403 (64.27%), Query Frame = 1 Query: 478 FDEVVLTTEWEVDGFLAACMVFAVVTAEARRAAPVVPGGAERPYPLRTVIVGEGKAVQAEEALRAMRQTELIPPDCHVDVIEGCGPAAEAENWRHQEPAGGRGLHGKGREXXXXXXXXXXXXPGQGREGDVKSGGRSFFGSCSGLLLRSRVLRSVLGRWFWLP---------GARRD-------------------LHLARC-----ARGRGGGK-----FDHVDLFVSGGFSGVFAGKGAGSE--APPR-PLRRXXXXXXXGGEGELDRGEVEEAMAAVSRVFVVQLDDLVGRYGFPRAIAPDRTPTLSAAMAGARGVLPAFLRRVIAASNHLALTEFPDRVAAATAAGRYANEELRVTASSIAAAALAEEPGIGRGRVAELGACMADLIASDFEALEAAGL 1563 +D+VVLTTEWE DG LAAC++F+VVTAE +RA P G +RPYPLR +IVGEGKA QA EAL AMR+T LIPPDC VDV+E AA+ E + QE RG+ + E EG RSF GSCS LLL LR + GR L R+D L R A GRGGG+ + H+D+FVSGGFSG F G+ G E AP P + GG+ EL R +VEEA+A V+RV VVQL+DLV YGFP AIAPDRTPTL+AA+AGARGVLP+ LRR IAASNHLALTEFPD+VA+A AGRYANEELRVTASSIAAAA+AEEPG+GRGRVAELGACMADLIASDFEALE AGL Sbjct: 3 YDQVVLTTEWEADGLLAACLLFSVVTAETKRA-PFASDGTKRPYPLRNLIVGEGKANQAREALEAMRRTNLIPPDCRVDVLEAGEGAAKGE--KRQED---RGIEAEEEE-----------------EGGGDGVWRSFLGSCSVLLLLRSTLRWLFGRRRGLARTKLREVFNATRKDNQRVLVIALKPPRDLVEVLLESGRASWWGRAMGRGGGRRGCSRYKHIDMFVSGGFSGAFRGQREGGECSAPGHSPREQRHRRPSAGGDEELSRDDVEEALARVNRVLVVQLEDLVRPYGFPTAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIEAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGL 382
BLAST of mRNA_L-elsbetiae_contig8913.17936.1 vs. uniprot
Match: A0A6H5JGT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT4_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.420e-28 Identity = 78/156 (50.00%), Postives = 96/156 (61.54%), Query Frame = 1 Query: 7 ILEGALLVLIGVLSPFWLPLPLYRAREAVAGQRRRLRLLGRSAGDGGGGEXXXDXEDGGGVKXXXXXXXXXXXXXXXXGKTASEKAPTQPERRAAAAAVEGLPGLGRRYLDFIAQALGQGHEAAVAAAAAVTAPYGHGGLPRYSGGHPDNFFIDVS 474 +LEG L++LIGVLS FWLPLPLYR REAV +RRRLRLL +S GG D + ++ + A+E T+ E ++AAAA +G P LGRRYLDF+AQALGQ H AA AAA+ AP GLPR GGHP+ F+DVS Sbjct: 19 VLEGVLVLLIGVLSTFWLPLPLYRLREAVTCRRRRLRLLRQSEECGGKAGGGADSK---AIRPVGGREAGNGGGHGHTNEGAAESL-TRQEPKSAAAAADGFPDLGRRYLDFLAQALGQSHSAA---AAAIAAPDRRPGLPRNGGGHPEGCFVDVS 167 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8913.17936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8913.17936.1 >prot_L-elsbetiae_contig8913.17936.1 ID=prot_L-elsbetiae_contig8913.17936.1|Name=mRNA_L-elsbetiae_contig8913.17936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=521bp CGILEGALLVLIGVLSPFWLPLPLYRAREAVAGQRRRLRLLGRSAGDGGGback to top mRNA from alignment at L-elsbetiae_contig8913:239..8046+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8913.17936.1 ID=mRNA_L-elsbetiae_contig8913.17936.1|Name=mRNA_L-elsbetiae_contig8913.17936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7808bp|location=Sequence derived from alignment at L-elsbetiae_contig8913:239..8046+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8913:239..8046+ >mRNA_L-elsbetiae_contig8913.17936.1 ID=mRNA_L-elsbetiae_contig8913.17936.1|Name=mRNA_L-elsbetiae_contig8913.17936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3126bp|location=Sequence derived from alignment at L-elsbetiae_contig8913:239..8046+ (Laminarionema elsbetiae ELsaHSoW15)back to top |