mRNA_L-elsbetiae_contig891.17934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig891.17934.1 vs. uniprot
Match: D8LMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV7_ECTSI) HSP 1 Score: 320 bits (821), Expect = 3.370e-98 Identity = 210/386 (54.40%), Postives = 241/386 (62.44%), Query Frame = 1 Query: 1513 IGDVSFPVDKVVDCLRR----------LLAGVYVSRGLDMHLLLFHEAVQTDPSSAPGPTASAGVH-------------------------GDSTGGDAA-----------------VQGSHHKSARLSMAVEAAGRGPPSPGVAG---------AGVGGNSRGERRLSAPGTPTTEKSGRFATTGRVQEFRAVLKGAAAHASKMKVAHANRELNIEGAIRGHDVDAAVLIKSTNPGKQSKQQIKRVARAREAVDGMLKRWPLIVERMGVCTEQAIKIRNLVKTAGVFSGAGXXXXXXXXXXSAIPRQNGHPTLDTRACERLRAARAHARLVEHHAEILVLSLRLFERVAFAIQRRQEEREYHRLAALGLIPPGVSLSDYRDQLRS 2487 +G S PV+K D LRR +LAGVYVSRG DMHLLLFHEA QT+ S + SAG G + G+A V G+ R SMAVEA G V+G + + G+ RR +A T K+GRFAT GR++EFRA+LKGAAAHASKMK AHANREL+IEGA+RGHDVDAAVL KSTNPG+Q+KQQI RVARAREAVDGML RWPL++ERMG+CTEQAIKIRNLVKTAG F G +A T DTRACER RAA+ HAR+VE HAEIL LS R FERVA AIQRRQEEREYHRLAALGL+PPGVS+S++RDQLRS Sbjct: 8 LGQRSHPVEK--DTLRRPIKTSNSQQRILAGVYVSRGFDMHLLLFHEAAQTESRSDDSSSYSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTRSGNAGQENGVGGAGTQSKTELGVSGTTGMGQRHSMAVEATG-------VSGLKVRCDASSSSLDGSGGSSRRTAAT---VTGKTGRFATAGRLREFRAMLKGAAAHASKMKTAHANRELSIEGAVRGHDVDAAVLNKSTNPGRQTKQQIGRVARAREAVDGMLTRWPLVIERMGICTEQAIKIRNLVKTAGTFPTGGLAAENTEP--AAATAAGSSSTNDTRACERRRAAKEHARVVEQHAEILTLSQR-FERVASAIQRRQEEREYHRLAALGLVPPGVSISEFRDQLRS 378
BLAST of mRNA_L-elsbetiae_contig891.17934.1 vs. uniprot
Match: D8LMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV8_ECTSI) HSP 1 Score: 306 bits (783), Expect = 1.590e-84 Identity = 281/583 (48.20%), Postives = 311/583 (53.34%), Query Frame = 1 Query: 1 MHEESALDLARLRIRQLVSVRGRRGCLLRAALCLVRLSHRGLSPYELSAALRHVLESYKSQRPHPNKQPAFS---AGAAKN-----------------------------------------------------ARQASPVAATKGDPTAAASP---GEAEEDAIPSAVLLXXXXXGNAQGGPTAGPGRVLTGGRGSTQGRTVVFAENERGPEGAGVSAV---------------------------GGVSAAEAEEAPAQAHGRVIGAVPAAVTSSTERAEKGTAGGAGGRAKQDLTSRSAFADQDWRALEPDLTQFCHKVLGRLVLRDYTTVTAVDQELIHHLPELPDKFVVLADSFAKELPGVRRAEEQLAALAAIVVLSTHGGGEAPRRASRPYREKLFIALANVEILYAMNGSKRGDPQAYLEYMHLAHVFAAPRRFASAVRSTFEECYNVLPHETAPAHGRSHLHH----ARGGGGHHDLLYTVNGIKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTRAGVLRLVEAARLALERLGDAEETMNLAESAWALMFG 1479 MHEESA+ +ARLRIRQLVS++G RG LLRAALCLVRLSH GLS ELSAALRH+LE YKSQR +K P ++ A AA + AR+A+ T A+ SP G E P A N G P A P + +T GG AA E HG +TSS+ RAE+ T R AF QDWRALEPDL QFCHKVLGR VLRD+ TVTAVD E + E DKFVVLADSFAK+LPGVRRAEEQLAALAAIVVLSTHGG EAPRRASRP+REKLF ALA+VE+LYAMNGSK STFEE YNV+ H+ HGR+H H AR H DLLYTV+G+KHP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LTRAG LRL+EAA+L LERLGDAEETMNLAESAWALMFG Sbjct: 1089 MHEESAIGVARLRIRQLVSIKGHRGSLLRAALCLVRLSHAGLSVLELSAALRHILERYKSQRHQHHKPPPYTNVTASAAGSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAREPPAREAAVATPTTRQSPASTSPQATGSPETPPNPGASADTTKDRNNDSGLPDA-PRKSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGKGAAALGE-----HG---------LTSSSPRAER--------------TQRPAFGQQDWRALEPDLMQFCHKVLGRFVLRDFVTVTAVDLECL----ETRDKFVVLADSFAKDLPGVRRAEEQLAALAAIVVLSTHGGVEAPRRASRPHREKLFTALADVELLYAMNGSK----------------------------STFEEYYNVVSHKAMGFHGRNHREHYQHQARAAATH-DLLYTVHGLKHPVAARQPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------LTRAGALRLLEAAKLVLERLGDAEETMNLAESAWALMFG 1603 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig891.17934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig891.17934.1 >prot_L-elsbetiae_contig891.17934.1 ID=prot_L-elsbetiae_contig891.17934.1|Name=mRNA_L-elsbetiae_contig891.17934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=829bp MHEESALDLARLRIRQLVSVRGRRGCLLRAALCLVRLSHRGLSPYELSAAback to top mRNA from alignment at L-elsbetiae_contig891:22688..30042+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig891.17934.1 ID=mRNA_L-elsbetiae_contig891.17934.1|Name=mRNA_L-elsbetiae_contig891.17934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7355bp|location=Sequence derived from alignment at L-elsbetiae_contig891:22688..30042+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig891:22688..30042+ >mRNA_L-elsbetiae_contig891.17934.1 ID=mRNA_L-elsbetiae_contig891.17934.1|Name=mRNA_L-elsbetiae_contig891.17934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4974bp|location=Sequence derived from alignment at L-elsbetiae_contig891:22688..30042+ (Laminarionema elsbetiae ELsaHSoW15)back to top |