mRNA_L-elsbetiae_contig891.17933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig891.17933.1 vs. uniprot
Match: D8LMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV8_ECTSI) HSP 1 Score: 961 bits (2485), Expect = 1.110e-315 Identity = 635/1181 (53.77%), Postives = 737/1181 (62.40%), Query Frame = 1
Query: 2560 MAHVDLKI----------ADTAALGSTAIVSSGGLTPNCLRLKCGAPLAVEYRFNFATAIPKEDWLGVVGWGDEPSASACVLRKALLETSSGTVLFERGPPLPGKYAVYAFLTDSDDAVVGSSAMFECVGAFDADHARQARCRREFTLYLSTRWDMTLERATFKAAVAPALKQMLDARGVSFGYMDPRSDLGVEDLKSPWGVDAVLDGIKKCRPYLVCCLGELNDVELGAESVNASILRENPWLQNILRPGSSHFS-SSDRNPPAC-GGQMKPAAGLLTVTDLEVLAAFLLPVLQETIQVESGFGTTAAGKRMRLAAVPGGARRHACIVSALAEFRRLRSPQ-RETGDADGGGGSKRGGGALTSGLVTQGAAVPRRGVMTEHAFFYTRAACLRSELHPSQKMGAGGIAGVIRFINGSKMRMTTLKHELAASTNRFRQGYQDENVLLSMILEDLSRAIDTMYPLHTAPDRLDDASLFPHVSARHLLDRAVVQLPVVRYRGFRPEPPPATSAV--APGLTAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWRLQQRLEFIQFEERVRRTSGEAQGDGGGGDHAGGEGGWANEASAAEVAASCHNGAGGNHSDRHARTASERALTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPVAAAKRLAVVLAEYIEDKTTIGMVIVDQPGTGMTTALLVFLDWYCRGAAAGGRQGVTVVEALDSIPQYGRCNLSRAVITRPRLVARDVNDGSLIHEAVERRTLVLRVDCRDSCHGRLDNARLVHYLSCEIIRTFGMLYKMPDRPGLSSS-----------------------------------------DRPSVHDHGH---------GXXXXXXXXXXXGLVDTQDHFGGSDGHGNGD--ALAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESRVGEPVEVGQEVLGRWFDLLSGYGDLVLIVENPDALMSAVE----------NPVAWLPPELPSHVKVITTCTQGSSCQQLLCGADGWGWHLFRRKSGLDAETKGQVIDAVLRRHGVGCMLDWVESDLVLKEKTINIQASARLSFFFLVGVTEALCYSGLLANSGLAPGLHRAAFVGSRPASPPSEAPTTNARPPLSATTNAEAPTSAFAGKG-DGGCGGGGGMSDADVAELRGAATAM 5868
MA VDLKI A TA+ +S TP LRL CGAP V YRFN++TA+P DWLGV+ WGDEP+A C++R+ LE+SSGTV FE GPPLPGKYAV+AFLT+S++AV GS+AMFEC+ F A+ AR +R REFTLYLSTRWDM LERA F+ A APALKQMLDARGV+FG++D RSDL VEDL +P GVDAVLDGI++C PY VCCLGELNDVELGAESVNASIL+ NPWL+ +L S + SSDR G+M+ AA +LTVTDLEVL+ FLLPVLQETIQ ESG TTA R RLAAVPGGA RH+CIV+ALA+FRRL S Q RE GD + G G + G C + +H ++ L H + R ++ DLSRAID +YP+HTAPDRLD SLFPH SAR+LL+ AVV+LPVVRYRGFRPEP T V +PGL XXXXXXXXXXXXXXXX AWRLQQRLEFI FEERV+R SGEAQG G +AA V G+ G R + R+L + XXXXXXXXXXXXXXXXX TP AAKRLAVVLA+Y+ DKTTIGMV+VDQPGTG+TTALL FL+WYCRG AGGR+GVTVVE+LD IPQYGRCNLSRAVI+RPRLV+R++NDG L E VERRTLV+RVDCRD CHGRLD A LV+YLSCEIIRTFGM YKMPD+PGLSS +R +V + H G G+V Q + + + D A+ XXXXXXXK + G E+G EVL RWFD+L G+GDLVL++ENPDAL++ E NP+AWLPPELP HVKVITTC+ GSSCQQLLCGA+GWGWH+ RRK+GLDA+TKGQVIDAVLR+HGVGCMLDWVESDLVLKEKT NIQ FLVGVTEALCYSG LA SGL PGLH AA GSRPASP S + R +N+ + TSA G+ DG +SDADVA LRGAA +M
Sbjct: 1 MARVDLKIVAGVSPPPTTATTASNLKLGATTSNSPTPGFLRLTCGAPFEVAYRFNYSTAVPTGDWLGVIAWGDEPTAGTCIVRRPFLESSSGTVFFEEGPPLPGKYAVHAFLTESNNAVAGSTAMFECISGFGAEEARCSRNGREFTLYLSTRWDMMLERAAFRDAAAPALKQMLDARGVTFGFIDARSDLDVEDLTTPRGVDAVLDGIRRCCPYFVCCLGELNDVELGAESVNASILQGNPWLKRVLLSDSPALTNSSDREKKLVRAGRMRAAAAMLTVTDLEVLSGFLLPVLQETIQAESGSCTTAGVTRARLAAVPGGAARHSCIVNALADFRRLVSQQDREGGDGHDEEVAGDGNGKPVAADAGHG--------------------CSEARIHDGTRL---------------------LLHSCRVPSQRAPPYPKN----------DLSRAIDRLYPMHTAPDRLDYVSLFPHASARNLLNAAVVKLPVVRYRGFRPEPSAVTGGVLASPGLAVSPAASTAXXXXXXXXXXXXXXXX----------AWRLQQRLEFIPFEERVKRMSGEAQGGGDISXXXXXXXXXXXXXTAAAVRVDLSLGSDG-------RRGTARSLGTTPAETGXXXXXXXXXXXXXXXXX-----------TPAVAAKRLAVVLADYLGDKTTIGMVVVDQPGTGLTTALLGFLEWYCRGQVAGGRKGVTVVESLDRIPQYGRCNLSRAVISRPRLVSRNLNDGGLADETVERRTLVVRVDCRDPCHGRLDKAHLVNYLSCEIIRTFGMPYKMPDKPGLSSRYRIYNCRLDMFIFNLYGTYQWRRGDATNVGTLELRCRALWVERAAVRERTHWKELKPLALGNGGHHEGKKVHGIVSEQTSDNPREHNHDDDEAAVDPQDQLAADTAAPSGTKSGGGTMAVXXXXXXXKGGKEGGRTEIGPEVLRRWFDVLRGHGDLVLVIENPDALVTPEERAAASPEQVPNPLAWLPPELPPHVKVITTCSTGSSCQQLLCGAEGWGWHMLRRKAGLDADTKGQVIDAVLRKHGVGCMLDWVESDLVLKEKTANIQ--------FLVGVTEALCYSGKLARSGLPPGLHTAASAGSRPASPSSVSSAAACR------SNSGSCTSAGKGENCDGXXXXXXXLSDADVASLRGAAASM 1088
BLAST of mRNA_L-elsbetiae_contig891.17933.1 vs. uniprot
Match: D8LMV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV9_ECTSI) HSP 1 Score: 358 bits (920), Expect = 2.790e-108 Identity = 216/334 (64.67%), Postives = 244/334 (73.05%), Query Frame = 1
Query: 904 MGNKSGINLLDRFDDSMVDYLSAEVLLQQAFAIRSNTFGVDHPRARASAKHLLQVYDAQQGGREEEAAELRADPQAHFRTVNLRIAELERAVGTFSAKGNGG--------------GRSDAADVEPPLASLFQEKWGRAAAERARQRIRTRNFQGEAALGEGKTI-----RGGVLAD-------SEDNKLGGEGSGNDLPGGISAKTDGTHDTIAAMADFEATQVWHTTARHNPE-VSARAVAAIGGREGYSSEEAVRRATDSLKRQDYFLAAQSCMGSLGQNVRDPAAIQVLQESFRQISSFPKKEDFRAEVEISLGPAARGVLGERFTVRYS 1824
MG+KSGINLLDRFDDSMVDYLSAEVLLQQAF+IRS TFGVDHP+ARAS LLQVYDAQ GGR++EA ELRADP AH RTVNLRIAELERA+ TF +G G DAADVE LA+LF+EKW AAAERARQRIR R FQ AAL E K + RGG+ D +E+ L G G PG +S + T+ A A EA VWHTTAR +PE +SA ++A G++SEEAVRRATDSLKRQDYFLAA+SCMGSL Q+VR+P AIQVLQESFRQISSFPKKEDFRA+VE++LGPAA GVLGERFTVRYS
Sbjct: 1 MGSKSGINLLDRFDDSMVDYLSAEVLLQQAFSIRSATFGVDHPKARASGMLLLQVYDAQNGGRQDEAKELRADPHAHLRTVNLRIAELERAIETFKTEGGGAFXXXXXXXXXXXXXXXEDAADVELRLANLFKEKWALAAAERARQRIRKREFQTFAALEEDKGVKEKATRGGLHTDMNAYGVQAEEGYLSGGG-----PGMVS-DWEMTNAATAMTAGSEAPHVWHTTARIDPEGLSATLLSASNT--GFNSEEAVRRATDSLKRQDYFLAARSCMGSLEQDVRNPVAIQVLQESFRQISSFPKKEDFRADVEVALGPAASGVLGERFTVRYS 326 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig891.17933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig891.17933.1 >prot_L-elsbetiae_contig891.17933.1 ID=prot_L-elsbetiae_contig891.17933.1|Name=mRNA_L-elsbetiae_contig891.17933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1962bp MATHLAGGFSTKWVSQNRSPSHRVERILDSSRHPQNTPGRPQSAQSLFLTback to top mRNA from alignment at L-elsbetiae_contig891:3820..22239+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig891.17933.1 ID=mRNA_L-elsbetiae_contig891.17933.1|Name=mRNA_L-elsbetiae_contig891.17933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=18420bp|location=Sequence derived from alignment at L-elsbetiae_contig891:3820..22239+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig891:3820..22239+ >mRNA_L-elsbetiae_contig891.17933.1 ID=mRNA_L-elsbetiae_contig891.17933.1|Name=mRNA_L-elsbetiae_contig891.17933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=11772bp|location=Sequence derived from alignment at L-elsbetiae_contig891:3820..22239+ (Laminarionema elsbetiae ELsaHSoW15)back to top |