mRNA_L-elsbetiae_contig8908.17932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8908.17932.1
Unique NamemRNA_L-elsbetiae_contig8908.17932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8908.17932.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.470e-18
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QPLAASAAAPQAPLPPPQSSGGAGAPLSTADIFASGPRLRPASKVWGRPKPGE 159
            QP+AASAAAPQAPLPPPQSSGGAG PLSTADIFASGPRLRP SKVWGRP+PGE
Sbjct:  655 QPMAASAAAPQAPLPPPQSSGGAGDPLSTADIFASGPRLRPVSKVWGRPRPGE 707
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8908.17932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE4.470e-1892.45AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8908contigL-elsbetiae_contig8908:4179..6235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue5e-20
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
Ec32 ortholog descriptionCoatomer protein complex, gamma sub-unit
Ec32 orthologEc-10_004220.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size1039
Cds size1035
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8908.17932.1prot_L-elsbetiae_contig8908.17932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8908 4181..6235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816967.5770953-CDS-L-elsbetiae_contig8908:4180..49031622816967.5770953-CDS-L-elsbetiae_contig8908:4180..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 4181..4903 -
1691683948.510876-CDS-L-elsbetiae_contig8908:4180..49031691683948.510876-CDS-L-elsbetiae_contig8908:4180..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 4181..4903 -
1622816967.5906632-CDS-L-elsbetiae_contig8908:5371..55701622816967.5906632-CDS-L-elsbetiae_contig8908:5371..5570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 5372..5570 -
1691683948.523128-CDS-L-elsbetiae_contig8908:5371..55701691683948.523128-CDS-L-elsbetiae_contig8908:5371..5570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 5372..5570 -
1622816967.6044788-CDS-L-elsbetiae_contig8908:6122..62351622816967.6044788-CDS-L-elsbetiae_contig8908:6122..6235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 6123..6235 -
1691683948.5329566-CDS-L-elsbetiae_contig8908:6122..62351691683948.5329566-CDS-L-elsbetiae_contig8908:6122..6235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8908 6123..6235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8908.17932.1

>prot_L-elsbetiae_contig8908.17932.1 ID=prot_L-elsbetiae_contig8908.17932.1|Name=mRNA_L-elsbetiae_contig8908.17932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
QPLAASAAAPQAPLPPPQSSGGAGAPLSTADIFASGPRLRPASKVWGRPK
PGEQQQQQPPGAGGGGAPSAAAAAPAAAAAAASGPSYGRGSWGGGGQGGN
DAAQAPQEDPAAAAQRSEKERMAAMLFGGTGPAKPGSAAAAAAAASAPAP
RPARISTSGTAAATTTTRSAVDTPASSSTSSPQRKASAAASAAAAAPAAA
AAEPVDLLDFMSMGDDDSAPIATNGAVQGHSLAPSDQLGMDLLGGGGSNG
SGPSSPPRAAQTLDDLLGGGSSHNGDLSGAAQDASNGRRNSSGGGGEQAW
PPAARQRAGTVGSTSSPSGSLGTPSLIGGTGKPGGLDLSGLLLGE
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mRNA from alignment at L-elsbetiae_contig8908:4179..6235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8908.17932.1 ID=mRNA_L-elsbetiae_contig8908.17932.1|Name=mRNA_L-elsbetiae_contig8908.17932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2057bp|location=Sequence derived from alignment at L-elsbetiae_contig8908:4179..6235- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCTCTGGCGGCAAGCGCGGCGGCTCCGCAGGCGCCGCTGCCGCCTCC
CCAGTCGTCCGGGGGGGCCGGGGCGCCGCTGTCTACGGCCGACATTTTTG
CCAGTGGTCCCAGGTGCGCGGTGTGAAGACCCCGAGGGTGGGTGGGGTGT
CTGGGCGGTCGGTGGGCCTTTGGGGTGAACGGACTGGGTCGGAAGGGTTC
CGCCTAATACCGCGGTGTCCCGCCACTGTGTGGTACATAGACGGCGCGGT
ACTCCGAGTTACGTACGGTGTGCACTTGTGTCGTGCTTCGTACCGCAAAA
AGCTCAAAGTCGCGTTTTGCGGGACTCCAGCGGGCCGGTAGGTACCTCGG
GGACCTGCCGGGTCGTCGCCGCCCGTAGCGGCATCGGAATAACTGAACAC
GTGTTCTTCATACATTGGCATGTACAAGTAGTGCAGCCGCGCAGACAAGC
GCCGGGGCTGGGAATGCGGCCGCTTGTTGTCGCTGCCGAGAACCCTTTAA
AAACGCAAATGGTGTTCGCGTAGGCTTGTTTCTGCCGTGTCCGTTTCGTG
AAACGCCTTTTTTGTGTTGTATGAATCGACATCGAACCCCCCCGCTTTGC
CTGCCGACCATGCCTCCCTCTCGCCCCCTCCTCCCCATCATCACCCACAC
GCGAAATTACCAAAGGCTGCGACCCGCGTCGAAAGTTTGGGGCAGGCCCA
AGCCGGGGGAGCAGCAACAGCAACAGCCGCCCGGGGCTGGCGGCGGCGGC
GCTCCCAGCGCGGCGGCGGCCGCCCCTGCCGCTGCTGCCGCGGCAGCTTC
TGGGCCGTCTTACGGGAGGGGCAGCTGGGGCGGAGGCGGGCAGGGCGGGA
ACGACGCTGCGCAGGTGTTTAGAGTGCCGCGACCTTGCTTGAGGCGGCGT
GTGCGCCTGTGTGTCTCTCTTGGCGTGTGTTCGGTTTTTGGATTAAGGTT
GTTTGTGTATAGTGTTTGCTCTTGTATGTCTAGATGTGTTTTCTCGGTGC
CGTTCAACGTCCCATCCTTGTTTGTATTTTATTATTTTTGCTCTCGGATT
TGGGTCGCGCAGCGTTTTTTTGTGGCACCAAGAGCAGCGGTTTTTGCGGT
TCGCGCGGTGACATTATCAGTCCGCTCGGTATGGGTCTGTGGGTACGGGC
CTCCTGTGGGGCCGTACTTAGTGCCGGCGGGTGGGGTTAGCCGCGCGCTC
TTGTTGGTTTGACTCTCCACCATTTCCGTGCCTAGCTAGGTGCCGAAGTG
AGTGCGCGGACTCTCGGGTGTCAGCCCGTCGCTTTTTTCCGAACGCTCCG
TTCCCGCCTGACTGCGCGCAATCGATCCGCAGGCGCCGCAAGAAGATCCG
GCGGCGGCAGCGCAGCGAAGCGAGAAAGAGAGGATGGCCGCTATGCTCTT
CGGTGGGACGGGCCCCGCGAAACCGGGGTCGGCGGCGGCGGCGGCGGCGG
CGGCATCAGCACCGGCGCCCCGCCCGGCTCGAATTTCCACGTCAGGTACG
GCGGCGGCGACGACGACGACGCGGTCTGCCGTCGACACGCCGGCTTCCTC
GTCAACCTCATCTCCGCAGCGGAAGGCCTCGGCGGCGGCATCCGCCGCCG
CCGCTGCTCCTGCCGCGGCGGCGGCGGAGCCGGTCGACCTGCTAGATTTC
ATGAGCATGGGCGACGATGATTCCGCTCCTATCGCCACGAACGGAGCCGT
GCAAGGCCACTCTCTAGCGCCTTCGGACCAGCTAGGCATGGACCTCTTGG
GCGGCGGCGGCTCCAACGGTTCGGGCCCTTCCTCGCCGCCGAGGGCCGCT
CAGACCCTCGACGATCTGCTCGGAGGAGGGAGCAGTCACAACGGCGACCT
TAGCGGTGCCGCCCAGGATGCGTCCAACGGTCGCCGCAACAGCAGCGGTG
GCGGCGGCGAGCAGGCGTGGCCGCCGGCCGCGCGGCAACGAGCGGGGACG
GTAGGATCGACGTCCTCGCCTTCGGGCTCCTTGGGAACGCCGTCGTTGAT
CGGCGGCACGGGCAAGCCGGGCGGCCTCGACCTGTCTGGCCTTTTGCTTG
GCGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8908:4179..6235-

>mRNA_L-elsbetiae_contig8908.17932.1 ID=mRNA_L-elsbetiae_contig8908.17932.1|Name=mRNA_L-elsbetiae_contig8908.17932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig8908:4179..6235- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCTCTGGCGGCAAGCGCGGCGGCTCCGCAGGCGCCGCTGCCGCCTCC
CCAGTCGTCCGGGGGGGCCGGGGCGCCGCTGTCTACGGCCGACATTTTTG
CCAGTGGTCCCAGCAGCCTCTGGCGGCAAGCGCGGCGGCTCCGCAGGCGC
CGCTGCCGCCTCCCCAGTCGTCCGGGGGGGCCGGGGCGCCGCTGTCTACG
GCCGACATTTTTGCCAGTGGTCCCAGGCTGCGACCCGCGTCGAAAGTTTG
GGGCAGGCCCAAGCCGGGGGAGCAGCAACAGCAACAGCCGCCCGGGGCTG
GCGGCGGCGGCGCTCCCAGCGCGGCGGCGGCCGCCCCTGCCGCTGCTGCC
GCGGCAGCTTCTGGGCCGTCTTACGGGAGGGGCAGCTGGGGCGGAGGCGG
GCAGGGCGGGAACGACGCTGCGCAGGCTGCGACCCGCGTCGAAAGTTTGG
GGCAGGCCCAAGCCGGGGGAGCAGCAACAGCAACAGCCGCCCGGGGCTGG
CGGCGGCGGCGCTCCCAGCGCGGCGGCGGCCGCCCCTGCCGCTGCTGCCG
CGGCAGCTTCTGGGCCGTCTTACGGGAGGGGCAGCTGGGGCGGAGGCGGG
CAGGGCGGGAACGACGCTGCGCAGGCGCCGCAAGAAGATCCGGCGGCGGC
AGCGCAGCGAAGCGAGAAAGAGAGGATGGCCGCTATGCTCTTCGGTGGGA
CGGGCCCCGCGAAACCGGGGTCGGCGGCGGCGGCGGCGGCGGCGGCATCA
GCACCGGCGCCCCGCCCGGCTCGAATTTCCACGTCAGGTACGGCGGCGGC
GACGACGACGACGCGGTCTGCCGTCGACACGCCGGCTTCCTCGTCAACCT
CATCTCCGCAGCGGAAGGCCTCGGCGGCGGCATCCGCCGCCGCCGCTGCT
CCTGCCGCGGCGGCGGCGGAGCCGGTCGACCTGCTAGATTTCATGAGCAT
GGGCGACGATGATTCCGCTCCTATCGCCACGAACGGAGCCGTGCAAGGCC
ACTCTCTAGCGCCTTCGGACCAGCTAGGCATGGACCTCTTGGGCGGCGGC
GGCTCCAACGGTTCGGGCCCTTCCTCGCCGCCGAGGGCCGCTCAGACCCT
CGACGATCTGCTCGGAGGAGGGAGCAGTCACAACGGCGACCTTAGCGGTG
CCGCCCAGGATGCGTCCAACGGTCGCCGCAACAGCAGCGGTGGCGGCGGC
GAGCAGGCGTGGCCGCCGGCCGCGCGGCAACGAGCGGGGACGGTAGGATC
GACGTCCTCGCCTTCGGGCTCCTTGGGAACGCCGTCGTTGATCGGCGGCA
CGGGCAAGCCGGGCGGCCTCGACCTGTCTGGCCTTTTGCTTGGCGAGGCG
CCGCAAGAAGATCCGGCGGCGGCAGCGCAGCGAAGCGAGAAAGAGAGGAT
GGCCGCTATGCTCTTCGGTGGGACGGGCCCCGCGAAACCGGGGTCGGCGG
CGGCGGCGGCGGCGGCGGCATCAGCACCGGCGCCCCGCCCGGCTCGAATT
TCCACGTCAGGTACGGCGGCGGCGACGACGACGACGCGGTCTGCCGTCGA
CACGCCGGCTTCCTCGTCAACCTCATCTCCGCAGCGGAAGGCCTCGGCGG
CGGCATCCGCCGCCGCCGCTGCTCCTGCCGCGGCGGCGGCGGAGCCGGTC
GACCTGCTAGATTTCATGAGCATGGGCGACGATGATTCCGCTCCTATCGC
CACGAACGGAGCCGTGCAAGGCCACTCTCTAGCGCCTTCGGACCAGCTAG
GCATGGACCTCTTGGGCGGCGGCGGCTCCAACGGTTCGGGCCCTTCCTCG
CCGCCGAGGGCCGCTCAGACCCTCGACGATCTGCTCGGAGGAGGGAGCAG
TCACAACGGCGACCTTAGCGGTGCCGCCCAGGATGCGTCCAACGGTCGCC
GCAACAGCAGCGGTGGCGGCGGCGAGCAGGCGTGGCCGCCGGCCGCGCGG
CAACGAGCGGGGACGGTAGGATCGACGTCCTCGCCTTCGGGCTCCTTGGG
AACGCCGTCGTTGATCGGCGGCACGGGCAAGCCGGGCGGCCTCGACCTGT
CTGGCCTTTTGCTTGGCGAG
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