mRNA_L-elsbetiae_contig8906.17929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8906.17929.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE) HSP 1 Score: 372 bits (954), Expect = 8.550e-113 Identity = 213/398 (53.52%), Postives = 274/398 (68.84%), Query Frame = 2 Query: 2 SLAVSMPGSIVIPKLFAAAAAPPASVAAK--GSWKAIIPSGERPS--AKSVSDAKTHEYMRWLHDSNSLVAVVRLVSAAASSAFSRGPPAAPGDRPYATGRVIAHGTNLVLSGLRQILLGFACIVLAACIGIEDLEDKALILTSVADFIVGWLFLDAILSTRVSSFSIVNHKLLFVFVFVRLGLTALQVVLSFHQFRDGDSSLELYAAVFVISIVKLAMSHKSELMPCMDAVNHSYMATVHIVKHYGTPAKPNDHNHVSIVAET-NISALRESAAVKIQAVVRMHQAYSRTMRRQEVKVWHGPIVLDMRKRLTFRAYASLAIYTLVIAWINLCYVASYDTAAIRGWVASTAVTVLADILLRKPLSVLAIATFYTIRDYVRVPETVYVGTGRSQRPIGQ 1180 SLAVSMP SI+ PKLFAAAAAPP S+ +W+ I+P + S A+ ++ AK + RWL + N++VAV RL+S+A + SR + DR Y++G + GTNLV SGL Q+LL C+ L+A IGIED +KALI T+ A ++G LFLDA+LSTR S+FSI+N K+LF VF R+ +TALQVVL+FH R+ SS LY +F +SI + SHK+ELMPCMDAVN YM+ + + K Y P K DH+H + + T ++ LR +AAVKIQ +VRM+QA R +RRQEV W P V MRKRLTFRAY L ++T +AWINLCYVA YD AIR W+A+T + VL DI+LRKPLSVL +AT TIRD RVP TVY+G G QRPIG+ Sbjct: 506 SLAVSMPASILFPKLFAAAAAPPPSITVTMLHAWEKIVPPTSQGSTTAQDMTYAKANSQSRWLREPNTVVAVFRLISSAVLKSTSRVSSSFREDRRYSSGGAVDRGTNLVWSGLWQMLLDLVCVALSATIGIEDQLEKALISTTAAGLLLGLLFLDAVLSTRASTFSILNFKVLFSIVFARIVVTALQVVLAFHGMRNAASSTALYGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKV-DHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIVLRKPLSVLVVATVNTIRDSARVPGTVYIGKGPFQRPIGK 902
BLAST of mRNA_L-elsbetiae_contig8906.17929.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI) HSP 1 Score: 317 bits (813), Expect = 3.070e-89 Identity = 181/344 (52.62%), Postives = 239/344 (69.48%), Query Frame = 2 Query: 2 SLAVSMPGSIVIPKLFAAAAAPPASVAAK--GSWKAIIPSGERP--SAKSVSDAKTHEYMRWLHDSNSLVAVVRLVSAAASSAFSRGPPAAPGDRPYATGRVIAHGTNLVLSGLRQILLGFACIVLAACIGIEDLEDKALILTSVADFIVGWLFLDAILSTRVSSFSIVNHKLLFVFVFVRLGLTALQVVLSFHQFRDGDSSLELYAAVFVISIVKLAMSHKSELMPCMDAVNHSYMATVHIVKHYGTPAKPNDHNHVSIVAET-NISALRESAAVKIQAVVRMHQAYSRTMRRQEVKVWHGPIVLDMRKRLTFRAYASLAIYTLVIAWINLCYVASYDTAAIR 1018 SLAVSMP SI+IPKLFA AAAPP SV +W+ I+PS + +A+ ++++K + RWL + N+++AV RL+S+A + R PP+ G R Y+TG + GTNLV SGL Q+LL C+ L+A IGIED +KALI T+VA ++G LFLDA+LSTR SSFSI+N +LF VF R+ +TALQVVL+FH R+ SS LY +F +S+VK+ SHK+ELMPCMDAVN YM+ + + K Y P K DH+H + + T ++ LR +AAVKIQ +VRM+QA+ R +RRQEV VW P V MR+RLTFRAY L ++T +AWINLCYV YD AIR Sbjct: 1440 SLAVSMPASILIPKLFATAAAPPPSVTVTMLHAWEKIVPSTNQEVLTAQDMTNSKANSQTRWLREPNTVMAVFRLISSAVLRSTLRVPPSFRGGRRYSTGGAVDRGTNLVWSGLWQMLLDLVCVALSATIGIEDQLEKALISTTVAGLLLGLLFLDAVLSTRASSFSILNFNVLFSIVFARIVVTALQVVLAFHGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKV-DHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYTCLIVFTASVAWINLCYVVMYDGPAIR 1782
BLAST of mRNA_L-elsbetiae_contig8906.17929.1 vs. uniprot
Match: D7FLP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP9_ECTSI) HSP 1 Score: 269 bits (688), Expect = 3.950e-81 Identity = 150/275 (54.55%), Postives = 193/275 (70.18%), Query Frame = 2 Query: 197 VAVVRLVSAAASSAFSRGPPAAPGDRPYATGRVIAHGTNLVLSGLRQILLGFACIVLAACIGIEDLEDKALILTSVADFIVGWLFLDAILSTRVSSFSIVNHKLLFVFVFVRLGLTALQVVLSFHQFRDGDSSLELYAAVFVISIVKLAMSHKSELMPCMDAVNHSYMATVHIVKHYGTPAKPNDHNHVSIVAET-NISALRESAAVKIQAVVRMHQAYSRTMRRQEVKVWHGPIVLDMRKRLTFRAYASLAIYTLVIAWINLCYVASYDTAAIR 1018 +AV RL+S+A + R PP+ G R Y+TG + GTNLV SGL Q+LL C+ L+A IGIED +KALI T+VA ++G LFLDA+LSTR SSFSI+N +LF VF R+ +TALQVVL+FH R+ SS LY +F +S+VK+ SHK+ELMPCMDAVN YM+ + + K Y P K DH+H + + T ++ LR +AAVKIQ +VRM+QA+ R +RRQEV VW P V MR+RLTFRAYA L ++T +AWINLCYV YD AIR Sbjct: 1 MAVFRLISSAVLRSTLRVPPSFRGGRRYSTGGAVDRGTNLVWSGLWQMLLDLVCVALSATIGIEDQLEKALISTTVAGLLLGLLFLDAVLSTRASSFSILNFNVLFSIVFARIVVTALQVVLAFHGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKV-DHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYACLIVFTASVAWINLCYVVMYDGPAIR 274 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8906.17929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8906.17929.1 >prot_L-elsbetiae_contig8906.17929.1 ID=prot_L-elsbetiae_contig8906.17929.1|Name=mRNA_L-elsbetiae_contig8906.17929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=390bp MPGSIVIPKLFAAAAAPPASVAAKGSWKAIIPSGERPSAKSVSDAKTHEYback to top mRNA from alignment at L-elsbetiae_contig8906:738..6116- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8906.17929.1 ID=mRNA_L-elsbetiae_contig8906.17929.1|Name=mRNA_L-elsbetiae_contig8906.17929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5379bp|location=Sequence derived from alignment at L-elsbetiae_contig8906:738..6116- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8906:738..6116- >mRNA_L-elsbetiae_contig8906.17929.1 ID=mRNA_L-elsbetiae_contig8906.17929.1|Name=mRNA_L-elsbetiae_contig8906.17929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig8906:738..6116- (Laminarionema elsbetiae ELsaHSoW15)back to top |