mRNA_L-elsbetiae_contig8905.17928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8905.17928.1
Unique NamemRNA_L-elsbetiae_contig8905.17928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8905.17928.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 2.940e-55
Identity = 98/170 (57.65%), Postives = 122/170 (71.76%), Query Frame = 2 
Query:  173 AGRMHPVHCLRRDDVAFYEGERVLRPTQWYRATRVKIIGFRGHKGDQVEQGPTLFRTRDVAQGYFFQVGAGGGAVAILVELLSSHFA*PGNVPLCSYSSGREGVTSAWGYRKALRALRQIVAVSGGGPQQVGLHSLRIAAATVLAAGGTIPERIVAREGRWKEGGGAYKI 682
            +G+ H VHCLRR DV F++GE VL    W++AT V++  FRGHKGDQ E+G  + R R+VA+G   Q+GAGGGAVA+LVEL++ H A P + PLCS+   R      WGY KAL A  QIV  +GG P+QVGLHSLRI AAT LAAGG +P+RI+  EGRWKEG G +KI
Sbjct:  103 SGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVR-FRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKI 269
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BLAST of mRNA_L-elsbetiae_contig8905.17928.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 9.770e-53
Identity = 99/170 (58.24%), Postives = 123/170 (72.35%), Query Frame = 2 
Query:  173 AGRMHPVHCLRRDDVAFYEGERVLRPTQWYRATRVKIIGFRGHKGDQVEQGPTLFRTRDVAQGYFFQVGAGGGAVAILVELLSSHFA*PGNVPLCSYSSGREGVTSAWGYRKALRALRQIVAVSGGGPQQVGLHSLRIAAATVLAAGGTIPERIVAREGRWKEGGGAYKI 682
            +G+ H VHCLRR DV F++GE VL    W++AT V++  FRGHKGDQ E+G  + R R+VA+G   Q+GAGGGAVA+LVEL++ H A P + PLCS+   R      WGY KAL ALRQIV  +GG P+QVGLHSLRI AAT LAAGG +P+RI+  EGRWKE  G +KI
Sbjct:  720 SGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVR-FRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWKEASGTFKI 888
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BLAST of mRNA_L-elsbetiae_contig8905.17928.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.540e-12
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 2 
Query:  182 MHPVHCLRRDDVAFYEGERVLRPTQWYRATRVKIIGFRGHKGDQVEQGPTLFRTRDVAQGYFFQVGAGGGAVAILVELLSSHFA*PGNVPLCSYSSGREGVTSAWGYRKALRALRQIVAVSG 547
            M   H LRR DVAF+ G R L P +   A RV++  FR  KGDQ  +G    R R    G    V  GGGAV +++ELLS     P + PL ++ +G EG  S W  R A  ALRQ+V+++G
Sbjct:  210 MDSCHGLRRGDVAFFLGSRQLPPERRGEADRVEVR-FRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTG-EGRWSVWTRRHATEALRQVVSLAG 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8905.17928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K718_9PHAE2.940e-5557.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE9.770e-5358.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3G1_9PHAE1.540e-1242.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8905contigL-elsbetiae_contig8905:2109..3447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPiggyBac transposable element-derived protein
Ec32 orthologEc-00_004460.2
Exons1
Model size1339
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8905.17928.1prot_L-elsbetiae_contig8905.17928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8905 2290..2544 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816967.2314057-UTR-L-elsbetiae_contig8905:2108..22891622816967.2314057-UTR-L-elsbetiae_contig8905:2108..2289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8905 2109..2289 +
1691683948.2758257-UTR-L-elsbetiae_contig8905:2108..22891691683948.2758257-UTR-L-elsbetiae_contig8905:2108..2289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8905 2109..2289 +
1622816967.258752-UTR-L-elsbetiae_contig8905:2544..34471622816967.258752-UTR-L-elsbetiae_contig8905:2544..3447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8905 2545..3447 +
1691683948.2934732-UTR-L-elsbetiae_contig8905:2544..34471691683948.2934732-UTR-L-elsbetiae_contig8905:2544..3447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8905 2545..3447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816967.244871-CDS-L-elsbetiae_contig8905:2289..25441622816967.244871-CDS-L-elsbetiae_contig8905:2289..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8905 2290..2544 +
1691683948.284922-CDS-L-elsbetiae_contig8905:2289..25441691683948.284922-CDS-L-elsbetiae_contig8905:2289..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8905 2290..2544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8905.17928.1

>prot_L-elsbetiae_contig8905.17928.1 ID=prot_L-elsbetiae_contig8905.17928.1|Name=mRNA_L-elsbetiae_contig8905.17928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MHPVHCLRRDDVAFYEGERVLRPTQWYRATRVKIIGFRGHKGDQVEQGPT
LFRTRDVAQGYFFQVGAGGGAVAILVELLSSHFA*
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mRNA from alignment at L-elsbetiae_contig8905:2109..3447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8905.17928.1 ID=mRNA_L-elsbetiae_contig8905.17928.1|Name=mRNA_L-elsbetiae_contig8905.17928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1339bp|location=Sequence derived from alignment at L-elsbetiae_contig8905:2109..3447+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGCCTAGACAAGTCCGCTAACCTGTTATTTAAACCGAGTGTTTCGAG
CAGACTCCATACAGGAAGCATGAAACGTGATTTTATGGGGGCACGAAGAT
GTATACATTTTTTGGGTAGTATTTCTACTAGCCTAGAGGGAGAGAGGAAC
AGGGCCCCTGCTCACGAACGATGCGGGCAGAATGCACCCAGTCCACTGCT
TGCGGAGGGATGACGTGGCGTTTTACGAGGGAGAGAGGGTCTTGCGGCCG
ACTCAATGGTACCGAGCCACTCGTGTTAAAATAATAGGTTTTCGCGGGCA
CAAAGGGGACCAAGTAGAACAAGGGCCTACCCTGTTCAGGACGCGAGATG
TCGCACAGGGGTACTTTTTCCAGGTGGGCGCGGGCGGCGGAGCCGTCGCG
ATTTTGGTGGAACTCCTGTCTAGCCATTTCGCTTAGCCGGGAAACGTACC
CTTGTGCTCGTACTCTAGCGGGAGAGAAGGGGTAACGAGCGCGTGGGGGT
ATCGTAAGGCTCTGAGGGCACTTCGCCAGATAGTAGCGGTGTCGGGGGGC
GGCCCACAGCAAGTAGGGCTGCATTCCCTGCGGATAGCAGCTGCCACGGT
CTTGGCAGCCGGTGGTACGATACCGGAGAGGATAGTCGCGAGAGAAGGTA
GATGGAAGGAGGGAGGAGGGGCGTATAAGATATTATAAACGAAATAATAT
GGAGGATTCAGTGATTATGTCACGTAGACTAGCAAGGGGGGCAGTGGAGC
AGAAAGGAGTGACAGGCAAGGGGAAGGATGTCAAGGGGGCAGGAAAATAA
TCGTATTCGTCGGACAACTTCGGTTGTTGTGGATGCTGATGGTCCAAGTA
GTACCATCTGGGGGCTCGTTGCCCGAGACGACATTTATTTTTGGCCTGAA
CCGCTTGACAGGGGAAGAATCTTTTGCTGGATGAGAGAGAGCAGACCGGG
GTCTGTTCTCGTTAATAGCCAGTCGTATTCTTCCCCGACCCGGTAGAGAG
AAATTGAGAAAAATGACACTTCGAAGGAACAACATAAAGGAGGCACTTGA
AGAGTACGATCGGTGGTTGGGGGGGGATTGAAAAAATGTGGGGGGTTGTT
GTTGGTCAGGCACAGTACGACTGCACAGACAGCAGTGCTGTTACACGAAG
GGGGCCGGCTGATGTTCACCCTATTTGAGGGCCCAGCAAATGTAATACGG
TTTGCAGAACTCCTCTAATAACCCACCGAGATACAGAGTAGAGTAGACCT
CTTGCGGGACTTGCTTTGGCACATATATCACGGCTAGGGGAGGCCGAACA
TAGATTGTGATGGTTATTTACCGAGCAAAGGTGAGCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8905:2109..3447+

>mRNA_L-elsbetiae_contig8905.17928.1 ID=mRNA_L-elsbetiae_contig8905.17928.1|Name=mRNA_L-elsbetiae_contig8905.17928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig8905:2109..3447+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCCAGTCCACTGCTTGCGGAGGGATGACGTGGCGTTTTACGAGGG
AGAGAGGGTCTTGCGGCCGACTCAATGGTACCGAGCCACTCGTGTTAAAA
TAATAGGTTTTCGCGGGCACAAAGGGGACCAAGTAGAACAAGGGCCTACC
CTGTTCAGGACGCGAGATGTCGCACAGGGGTACTTTTTCCAGGTGGGCGC
GGGCGGCGGAGCCGTCGCGATTTTGGTGGAACTCCTGTCTAGCCATTTCG
CTTAGATGCACCCAGTCCACTGCTTGCGGAGGGATGACGTGGCGTTTTAC
GAGGGAGAGAGGGTCTTGCGGCCGACTCAATGGTACCGAGCCACTCGTGT
TAAAATAATAGGTTTTCGCGGGCACAAAGGGGACCAAGTAGAACAAGGGC
CTACCCTGTTCAGGACGCGAGATGTCGCACAGGGGTACTTTTTCCAGGTG
GGCGCGGGCGGCGGAGCCGTCGCGATTTTGGTGGAACTCCTGTCTAGCCA
TTTCGCTTAG
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