mRNA_L-elsbetiae_contig89.17921.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig89.17921.1
Unique NamemRNA_L-elsbetiae_contig89.17921.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig89.17921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig89contigL-elsbetiae_contig89:4521..6946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig89.17921.1prot_L-elsbetiae_contig89.17921.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig89 4521..6765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816966.3192592-CDS-L-elsbetiae_contig89:4520..45991622816966.3192592-CDS-L-elsbetiae_contig89:4520..4599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4521..4599 -
1691683947.5712152-CDS-L-elsbetiae_contig89:4520..45991691683947.5712152-CDS-L-elsbetiae_contig89:4520..4599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4521..4599 -
1622816966.3307664-CDS-L-elsbetiae_contig89:4790..48751622816966.3307664-CDS-L-elsbetiae_contig89:4790..4875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4791..4875 -
1691683947.585073-CDS-L-elsbetiae_contig89:4790..48751691683947.585073-CDS-L-elsbetiae_contig89:4790..4875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4791..4875 -
1622816966.3411562-CDS-L-elsbetiae_contig89:6728..67651622816966.3411562-CDS-L-elsbetiae_contig89:6728..6765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 6729..6765 -
1691683947.5980535-CDS-L-elsbetiae_contig89:6728..67651691683947.5980535-CDS-L-elsbetiae_contig89:6728..6765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 6729..6765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816966.3535686-UTR-L-elsbetiae_contig89:6765..69461622816966.3535686-UTR-L-elsbetiae_contig89:6765..6946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig89 6766..6946 -
1691683947.6096745-UTR-L-elsbetiae_contig89:6765..69461691683947.6096745-UTR-L-elsbetiae_contig89:6765..6946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig89 6766..6946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig89.17921.1

>prot_L-elsbetiae_contig89.17921.1 ID=prot_L-elsbetiae_contig89.17921.1|Name=mRNA_L-elsbetiae_contig89.17921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MPQLHHHPPSTLDTTLESAKHEGRPAASAGGTRRLGHHCRSPNVLQRPCW
IRGGGRMLPTQLWPMWR
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mRNA from alignment at L-elsbetiae_contig89:4521..6946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig89.17921.1 ID=mRNA_L-elsbetiae_contig89.17921.1|Name=mRNA_L-elsbetiae_contig89.17921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2426bp|location=Sequence derived from alignment at L-elsbetiae_contig89:4521..6946- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGCATCCCACGACACAGTCTGAATTGATGATATGTGACATATGTGCG
AGCAACGACCCCAGGGTCCTCCGCAATCCGCGTTCATACCGCATGCGTAG
TAGTGTTTATCTGTAGACTACCCTTATCTGGAGGCCATCAGGAGATGTTC
ATGAGCAGGAACGGAGAGAGACGCCCCCACCATGCCACAACTCCATCACC
ACCCACCAAGCACCCTCGGTGAGCCGAATCCGAATGACTGTTTTGGTGCC
CATGCCTAGATATAGAAGAACACCACAGAGGTTTGTAGTACATGGGTAGA
TGACGGCAACGGCATGGAGTGGCCTGTCCGCGGTCGTTCACTCTGGGGCG
GGGCTTGCGAGAGCGAGAACTGCAACAGAGATGGAGGGACTACAAAGCAG
AAACTCACGAAACAGGCCATTTTGCCAAGCTTTTTTGCACTTCGTGTCTC
GTCTCCTTGTTCTGCGGTGCCATAACAAACGTGGCACTACCAGCAACCAC
GAAGACACAGCAGCCTTCTGCGCTCATGAGGATACTCTCTACTCGTAATC
AGGGGCATCAATCACCACAGGGTTCGCTGAAAGGAAAATATGGAAAGAAG
GAAAAGAAGGTGATGTATATTCGGTGTAATTTCGATCGGAATTACATCGA
ATATACATCACCTTCTTTTCCTTTCGGCGACCTACCTCTGTGTTGATGCC
CCTGATGAGCAGAGAGCATTCTCATGAGCACAGAGGACTACGCTGTGGCG
TTGATGTGTCATTTGAATGGCGAGAACGAGAGAGATATTATGAAGGCCTG
GACTTGTAGGTTGCCCAGGCTTTTTCCTCTCTTGCTGGCTGTTACCGTGT
CCAAGCACAAAGGGAAGGGCCGTGCTGTCATCATCCCGCATTTTAGGTTT
TGCACATATGGCCACGGGGAACGTGCTCTCGACATTTTCTGTATTTTCTG
CTACCACAGCCTCTGTAATGCAGGCATAGGCTACACCGCATGCTCTTGCT
GGTATGGGACCTCGGGTCGGGCGTGCGATACTGGTAGGTGAAGATGCGGA
TACAGGCTCTTTATCCCTACATTAAGCCGTGCGAGAAAACAAAGGGGGTC
AATGTAGACTCAATGTGCAGAGCAGTCCAAATTGCACGCACACACACACA
CACTCATGCTACTACAGCAGCAGCTTATCTGTGTGGCGTGATGAAGCATG
TCGATCACACACGTCAGAGATTGCGACCCCTGCACTATTAAAAAGAAGAA
CAGTTAATTGTTTCGAAGGACTATTCGAACGACTAGATACATACGAACAC
CGACACACACACCCACAACAGCTGAACGCCATCACGTTGTACGAGAAAGG
TGCGTATGAAAACACCAGTCCTGCTCGTCGCTTGGTGAGCGGACCAACAG
GTGTTTTCTTGCGCAACGCTTCCCTACTAGTCCGGTGCGCCTGCTGTGCA
ATGAATATCGAGTTTTCTGAGCATTTTCAAATCGCCAATCCCGAAAGAGG
TTGCATGCACACTGCACACACCCCTAAGGACCTCTTGCTTTACTCCGGAG
CTCGGGTTCGATTTTTCTGTGAAAAAACGAACTAATGTACAGAGGTACGC
ATGCTTAAGTGCAGATACTCATAAATGGGCATCTCAGCTTGTGTACCGTA
CTGCTGCTGCAGACTGTTGCGTTTGGGATATTTTGAGCCATGGCTTCTCC
GCTTCCGAGGCGCCCGTTTCGTATATCTTGCAGCAGGAAATCACACCCCA
TATGTCTCTACTAGCGGAGGGGGGCCCGTGCTACCGTGCCCTCTCTCCGC
CGAGGTATCGACACCGAACATAACGGTTTCGTTACACCGAACAGAACGGA
AACGGAACCGTTTCCATAGAACAGAGGTGCCGGAGACCGTTTCCACAGCA
AGCGACCTCGTCTGGTGGTATCGACGGGGTCGGAACGCGCCTTTCTCTGC
ACCTTGAAACGGAGATGAAAGGTTGAACCTGCTCAAAATCGAGCAGATGT
CGCTTTTTCAACGCCACATCTCGCTGCCAAAACCCCCAACCAGTGGACCG
AACTCACGCCTCTGTTCACAGATACGACATTGGAATCTGCGAAACATGAG
GGTCGCCCCGCTGCTTCGGCTGGCGGCACTCGGCGCCTTGGGCATCATTG
TCGAAGGTGGGTGATAATAGGGTAGAGTTTCGCCTTGTCAATACACTCGC
CTGCGTTGTGTTTGCCGCATGCGTGTCATCCTATATTCGTTCGGCAGCCC
AATACAAATGCCACACTTCTCATGCTGACAAGTATAACGAGTTCCTAAAC
ATTGGCTTTTCCCCCGTCTGTGGATGATTGCCTGCACCTTCGATCAGCCC
AAACGTGCTCCAACGGCCTTGCTGGATTCGAGGCGGCGGACGTATGTTGC
CCACTCAGCTGTGGCCAATGTGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig89:4521..6946-

>mRNA_L-elsbetiae_contig89.17921.1 ID=mRNA_L-elsbetiae_contig89.17921.1|Name=mRNA_L-elsbetiae_contig89.17921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig89:4521..6946- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACAACTCCATCACCACCCACCAAGCACCCTCGATGCCACAACTCC
ATCACCACCCACCAAGCACCCTCGATACGACATTGGAATCTGCGAAACAT
GAGGGTCGCCCCGCTGCTTCGGCTGGCGGCACTCGGCGCCTTGGGCATCA
TTGTCGAAGATACGACATTGGAATCTGCGAAACATGAGGGTCGCCCCGCT
GCTTCGGCTGGCGGCACTCGGCGCCTTGGGCATCATTGTCGAAGCCCAAA
CGTGCTCCAACGGCCTTGCTGGATTCGAGGCGGCGGACGTATGTTGCCCA
CTCAGCTGTGGCCAATGTGGCGGCCCAAACGTGCTCCAACGGCCTTGCTG
GATTCGAGGCGGCGGACGTATGTTGCCCACTCAGCTGTGGCCAATGTGGC
GG
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