mRNA_L-elsbetiae_contig89.17920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.250e-19 Identity = 51/108 (47.22%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 94 GAQMCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPC-------------NIDGEIVDDRMCSAGIPGILVSDVCCPTSCGSCG 369 G MC G+ G +ASDVCC +SCG CGGSGCS R G CC V+ SG CS+T+ APC V+ MC I GI SDVCC SCGSCG Sbjct: 176 GEFMCEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCG 283
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 1.660e-19 Identity = 51/105 (48.57%), Postives = 56/105 (53.33%), Query Frame = 1 Query: 103 MCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNIDGE-------------IVDDRMCSAGIPGILVSDVCCPTSCGSCG 369 MC G+ G + SDVCC SCG CGG+GCS R G CC V+ SG CSVT APC V+ MC GI GI SDVCC TSCGSCG Sbjct: 188 MCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCG 292
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.850e-17 Identity = 50/107 (46.73%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 106 CSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNIDGEIVDDR----------------MCSAGIPGILVSDVCCPTSCGSCG 369 C G+ G ++SDVCC LSCG CGG+GC+ R G CC V+ SG CSVT APC I G MC GI GI SDVCC +SCGSCG Sbjct: 53 CDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPC-ITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCG 158
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 5.860e-16 Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 100 QMCSNGLPGFEASDVCCPLSCGQCGGSGCSKR---GEGCCTSDVKDSGDLCSVTKSAPCNIDGEIVDDR-------------MCSAGIPGILVSDVCCPTSCGSCG 369 + C G+ G + SD+ C SCG CGG+GC+ R E CC V+ SG CSVT APC + MC GI GI SD+CC +SCGSCG Sbjct: 62 ETCDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCG 167
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.880e-14 Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 97 AQMCSNGLPGFEASDV-CCPLSCGQCGGSGCSKRG-------EGCCTSDVKDSGDLCSVTKSAPCNIDGEIVDD----RMCSAGIPGILVSDV-CCPTSCGSCG 369 A+ CSNGL G +A+ V CCPL+CGQCGG+GC+ G CC VK S + C T APC I CS G+ GI + V CCP CG CG Sbjct: 190 ARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCG 293
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 7.170e-13 Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 106 CSNGLPGFEAS--DVCCPLSCGQCGGSGCSKRG--EGCCTSDVKDSGDLCSVTKSAPCNIDG 279 C+NG+PG E++ +VCCP SCG CGG GC +RG + CCT+++ D G CSVT +APC +DG Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAADECCTTEIMDYGQPCSVTGTAPCYLDG 1238
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 8.210e-12 Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 Query: 124 GFEASDVCCPLSCGQCGGSGCSKRGEG-----CCTSDVKDSGDLCSVTKSAPCNID 276 G + D CC CG+CGG GCS RGEG CC SD+KD+G++CSVT APC ID Sbjct: 636 GIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 8.270e-12 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 106 CSNGLPGFEAS--DVCCPLSCGQCGGSGCSKRG--EGCCTSDVKDSGDLCSVTKSAPCNIDG 279 C+NG+ G E++ +VCCP SCG CGG GC +RG + CCT+++ D G CSVT +APC +DG Sbjct: 674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAADECCTTEIMDYGQPCSVTGTAPCYLDG 735
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 2.120e-11 Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 103 MCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNI 273 +C+NG+ G E+ VCC +SCGQCGGSGCS RG G CCTS + + G++C V APC I Sbjct: 200 VCTNGVSGIESDGVCCEISCGQCGGSGCSMRGNGAASCCTSTILEVGEVCGV---APCII 256
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 2.900e-11 Identity = 41/95 (43.16%), Postives = 48/95 (50.53%), Query Frame = 1 Query: 100 QMCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG-----CCTSDVKDSGDLCSVTKSAPCNIDGEIVDDRMCSAGIPGILVSDVCCPTSCGSCG 369 Q C L G CC C +CGGSGCS RG+G CCTSD+ +G C SAPC ++ S G GIL DVCC CG+CG Sbjct: 19 QTCDGILKGI----YCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGSSPTPASSGGCDGILQGDVCCSAECGTCG 106 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig89.17920.1 >prot_L-elsbetiae_contig89.17920.1 ID=prot_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp DSDSSSSDSSDSSSSSSSDSSEEDSSDSGDGGAQMCSNGLPGFEASDVCCback to top mRNA from alignment at L-elsbetiae_contig89:3586..4256- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig89.17920.1 ID=mRNA_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=671bp|location=Sequence derived from alignment at L-elsbetiae_contig89:3586..4256- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig89:3586..4256- >mRNA_L-elsbetiae_contig89.17920.1 ID=mRNA_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig89:3586..4256- (Laminarionema elsbetiae ELsaHSoW15)back to top |