mRNA_L-elsbetiae_contig89.17920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig89.17920.1
Unique NamemRNA_L-elsbetiae_contig89.17920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.250e-19
Identity = 51/108 (47.22%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   94 GAQMCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPC-------------NIDGEIVDDRMCSAGIPGILVSDVCCPTSCGSCG 369
            G  MC  G+ G +ASDVCC +SCG CGGSGCS R  G   CC   V+ SG  CS+T+ APC                   V+  MC   I GI  SDVCC  SCGSCG
Sbjct:  176 GEFMCEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCG 283          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.660e-19
Identity = 51/105 (48.57%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  103 MCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNIDGE-------------IVDDRMCSAGIPGILVSDVCCPTSCGSCG 369
            MC  G+ G + SDVCC  SCG CGG+GCS R  G   CC   V+ SG  CSVT  APC                   V+  MC  GI GI  SDVCC TSCGSCG
Sbjct:  188 MCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCG 292          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.850e-17
Identity = 50/107 (46.73%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  106 CSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNIDGEIVDDR----------------MCSAGIPGILVSDVCCPTSCGSCG 369
            C  G+ G ++SDVCC LSCG CGG+GC+ R  G   CC   V+ SG  CSVT  APC I G                      MC  GI GI  SDVCC +SCGSCG
Sbjct:   53 CDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPC-ITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCG 158          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.860e-16
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  100 QMCSNGLPGFEASDVCCPLSCGQCGGSGCSKR---GEGCCTSDVKDSGDLCSVTKSAPCNIDGEIVDDR-------------MCSAGIPGILVSDVCCPTSCGSCG 369
            + C  G+ G + SD+ C  SCG CGG+GC+ R    E CC   V+ SG  CSVT  APC        +              MC  GI GI  SD+CC +SCGSCG
Sbjct:   62 ETCDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCG 167          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.880e-14
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   97 AQMCSNGLPGFEASDV-CCPLSCGQCGGSGCSKRG-------EGCCTSDVKDSGDLCSVTKSAPCNIDGEIVDD----RMCSAGIPGILVSDV-CCPTSCGSCG 369
            A+ CSNGL G +A+ V CCPL+CGQCGG+GC+  G         CC   VK S + C  T  APC I             CS G+ GI  + V CCP  CG CG
Sbjct:  190 ARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCG 293          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.170e-13
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  106 CSNGLPGFEAS--DVCCPLSCGQCGGSGCSKRG--EGCCTSDVKDSGDLCSVTKSAPCNIDG 279
            C+NG+PG E++  +VCCP SCG CGG GC +RG  + CCT+++ D G  CSVT +APC +DG
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAADECCTTEIMDYGQPCSVTGTAPCYLDG 1238          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.210e-12
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  124 GFEASDVCCPLSCGQCGGSGCSKRGEG-----CCTSDVKDSGDLCSVTKSAPCNID 276
            G +  D CC   CG+CGG GCS RGEG     CC SD+KD+G++CSVT  APC ID
Sbjct:  636 GIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.270e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  106 CSNGLPGFEAS--DVCCPLSCGQCGGSGCSKRG--EGCCTSDVKDSGDLCSVTKSAPCNIDG 279
            C+NG+ G E++  +VCCP SCG CGG GC +RG  + CCT+++ D G  CSVT +APC +DG
Sbjct:  674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAADECCTTEIMDYGQPCSVTGTAPCYLDG 735          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.120e-11
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  103 MCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG---CCTSDVKDSGDLCSVTKSAPCNI 273
            +C+NG+ G E+  VCC +SCGQCGGSGCS RG G   CCTS + + G++C V   APC I
Sbjct:  200 VCTNGVSGIESDGVCCEISCGQCGGSGCSMRGNGAASCCTSTILEVGEVCGV---APCII 256          
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-11
Identity = 41/95 (43.16%), Postives = 48/95 (50.53%), Query Frame = 1
Query:  100 QMCSNGLPGFEASDVCCPLSCGQCGGSGCSKRGEG-----CCTSDVKDSGDLCSVTKSAPCNIDGEIVDDRMCSAGIPGILVSDVCCPTSCGSCG 369
            Q C   L G      CC   C +CGGSGCS RG+G     CCTSD+  +G  C    SAPC ++         S G  GIL  DVCC   CG+CG
Sbjct:   19 QTCDGILKGI----YCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGSSPTPASSGGCDGILQGDVCCSAECGTCG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig89.17920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Y1_9PHAE1.250e-1947.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U7_ECTSI1.660e-1948.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE1.850e-1746.73AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G5D5_ECTSI5.860e-1641.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC43_9PHAE1.880e-1444.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN6_ECTSI7.170e-1354.84Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
D8LJ42_ECTSI8.210e-1257.14FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JRK3_9PHAE8.270e-1253.23VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LTS2_ECTSI2.120e-1155.00Similar to Gram-negative bacteria-binding protein ... [more]
D7FWE8_ECTSI2.900e-1143.16Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig89contigL-elsbetiae_contig89:3586..4256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog2880.D7FY01
KEGG koko:K13023
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Exons3
Model size371
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig89.17920.1prot_L-elsbetiae_contig89.17920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig89 3588..4256 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816966.4276454-CDS-L-elsbetiae_contig89:3587..36671622816966.4276454-CDS-L-elsbetiae_contig89:3587..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 3588..3667 -
1691683947.6431282-CDS-L-elsbetiae_contig89:3587..36671691683947.6431282-CDS-L-elsbetiae_contig89:3587..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 3588..3667 -
1622816966.4385557-CDS-L-elsbetiae_contig89:3807..39991622816966.4385557-CDS-L-elsbetiae_contig89:3807..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 3808..3999 -
1691683947.6552322-CDS-L-elsbetiae_contig89:3807..39991691683947.6552322-CDS-L-elsbetiae_contig89:3807..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 3808..3999 -
1622816966.4513435-CDS-L-elsbetiae_contig89:4159..42561622816966.4513435-CDS-L-elsbetiae_contig89:4159..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4160..4256 -
1691683947.6654677-CDS-L-elsbetiae_contig89:4159..42561691683947.6654677-CDS-L-elsbetiae_contig89:4159..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig89 4160..4256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig89.17920.1

>prot_L-elsbetiae_contig89.17920.1 ID=prot_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
DSDSSSSDSSDSSSSSSSDSSEEDSSDSGDGGAQMCSNGLPGFEASDVCC
PLSCGQCGGSGCSKRGEGCCTSDVKDSGDLCSVTKSAPCNIDGEIVDDRM
CSAGIPGILVSDVCCPTSCGSCG
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mRNA from alignment at L-elsbetiae_contig89:3586..4256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig89.17920.1 ID=mRNA_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=671bp|location=Sequence derived from alignment at L-elsbetiae_contig89:3586..4256- (Laminarionema elsbetiae ELsaHSoW15)
GACTCTGACTCGTCCTCCAGCGACTCATCAGACTCTTCTTCATCCTCTTC CAGCGACTCATCCGAAGAAGACTCTAGCGACAGCGGCGACGGGGGTGGTA CGTGTGTAGATTTATTAATGGTCGGTTCTAGTGTGATGTTGAGAAGTGTC ACGCTCAAGCGAAGCTCAAAGCGTTCGTAACCTGTTCTTGCAACACTATT GTTTTCCGAAGCGTTAACATGTCCCGCCCATGAATGGTTTCCTGTATCAT CGAACAGCCCAAATGTGCTCCAACGGCCTTCCCGGGTTCGAGGCGTCGGA CGTATGCTGCCCACTCAGCTGCGGCCAGTGTGGCGGAAGCGGATGCTCGA AGCGCGGCGAAGGATGCTGCACGAGCGACGTGAAGGACTCCGGGGACTTG TGCAGCGTGACGAAGTCAGCTCCCTGCAACATCGACGGCGAAATTGTTGG TCAGTTACAATGGCTTCCACCCTTCTCCGAAGCATTTACTCTTATGGACG TTCCAGCAAACGCTTAGGTCACCACTTGCTAGGCCAGCGAGCCGCCAATG CTTTTTAACACCTTGCGTTGTTTTGGTCGAAATATGCAGACGACCGGATG TGCAGCGCCGGCATTCCCGGGATCCTGGTCAGCGACGTCTGCTGCCCTAC CAGCTGCGGATCGTGCGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig89:3586..4256-

>mRNA_L-elsbetiae_contig89.17920.1 ID=mRNA_L-elsbetiae_contig89.17920.1|Name=mRNA_L-elsbetiae_contig89.17920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig89:3586..4256- (Laminarionema elsbetiae ELsaHSoW15)
GACTCTGACTCGTCCTCCAGCGACTCATCAGACTCTTCTTCATCCTCTTC
CAGCGACTCATCCGAAGAAGACTCTAGCGACAGCGGCGACGGGGGTGGAC
TCTGACTCGTCCTCCAGCGACTCATCAGACTCTTCTTCATCCTCTTCCAG
CGACTCATCCGAAGAAGACTCTAGCGACAGCGGCGACGGGGGTGCCCAAA
TGTGCTCCAACGGCCTTCCCGGGTTCGAGGCGTCGGACGTATGCTGCCCA
CTCAGCTGCGGCCAGTGTGGCGGAAGCGGATGCTCGAAGCGCGGCGAAGG
ATGCTGCACGAGCGACGTGAAGGACTCCGGGGACTTGTGCAGCGTGACGA
AGTCAGCTCCCTGCAACATCGACGGCGAAATTGTTGCCCAAATGTGCTCC
AACGGCCTTCCCGGGTTCGAGGCGTCGGACGTATGCTGCCCACTCAGCTG
CGGCCAGTGTGGCGGAAGCGGATGCTCGAAGCGCGGCGAAGGATGCTGCA
CGAGCGACGTGAAGGACTCCGGGGACTTGTGCAGCGTGACGAAGTCAGCT
CCCTGCAACATCGACGGCGAAATTGTTGACGACCGGATGTGCAGCGCCGG
CATTCCCGGGATCCTGGTCAGCGACGTCTGCTGCCCTACCAGCTGCGGAT
CGTGCGGAACGACCGGATGTGCAGCGCCGGCATTCCCGGGATCCTGGTCA
GCGACGTCTGCTGCCCTACCAGCTGCGGATCGTGCGGA
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