mRNA_L-elsbetiae_contig89.17919.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 100 bits (248), Expect = 2.170e-22 Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 1 Query: 28 AQTCSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIIDGEITDDRMCSAGIPGILVSDVCCPTSCGSCGG 303 AQTCSNGL G+E S CC + CG CGG GCSQLGEG CCTS++ + + CS +APCI+D D+ CS G+ G S CC CG+CGG Sbjct: 378 AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMD----TDQTCSNGLAGFENSGACCSVGCGTCGG 468
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.790e-20 Identity = 51/106 (48.11%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 37 CSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIIDGEITDDR-------------MCSAGIPGILVSDVCCPTSCGSCGGT 306 C G+ G + SDVCC SCG CGG+GCS G CC V+ SG CSVT APC+ T + MC GI GI SDVCC TSCGSCGGT Sbjct: 189 CDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCGGT 294
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.770e-20 Identity = 51/109 (46.79%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 34 TCSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIIDGEITDDR---------------MCSAGIPGILVSDVCCPTSCGSCGGT 306 TC G+ G ++SDVCC LSCG CGG+GC+ G CC V+ SG CSVT APCI T + MC GI GI SDVCC +SCGSCGG+ Sbjct: 52 TCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGS 160
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 3.260e-19 Identity = 49/106 (46.23%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 37 CSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIIDGEITDDR-------------MCSAGIPGILVSDVCCPTSCGSCGGT 306 C G+ G +ASDVCC +SCG CGGSGCS G CC V+ SG CS+T+ APC+ T MC I GI SDVCC SCGSCGG+ Sbjct: 180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGS 285
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 5.500e-19 Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 31 QTCSNGLPGFEASDVCCPLSCGRCGGSGCSQL---GEGCCTSDVKDSGDLCSVTKSAPCIIDGEITDDR-------------MCSAGIPGILVSDVCCPTSCGSCGGT 306 +TC G+ G + SD+ C SCG CGG+GC+ E CC V+ SG CSVT APC+ T + MC GI GI SD+CC +SCGSCGGT Sbjct: 62 ETCDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGT 169
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.110e-18 Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 7 DFLHHRTAQTCSNGLPGFEASDV-CCPLSCGRCGGSGCSQLG-------EGCCTSDVKDSGDLCSVTKSAPCIIDGEITDDRMCSAGIPGILVSDV-CCPTSCGSCGGT 306 D+ + C++G+ G + + V CCPL CG+C G+GC+ G E CC VKD+G+ C VT APCI + CS GI GI + V CCP CG CGGT Sbjct: 38 DYAKYVPQSACNDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSP--PEGECSGGIEGIDGNGVVCCPLECGQCGGT 144
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 4.370e-15 Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1 Query: 28 AQTCSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIID 207 AQTCSNGL G+E S CC + CG CGG GCSQLG+G CCTS++ +G+ CS +APCI+D Sbjct: 397 AQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSEKGAAPCIMD 459
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 7.710e-14 Identity = 42/97 (43.30%), Postives = 51/97 (52.58%), Query Frame = 1 Query: 31 QTCSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG-----CCTSDVKDSGDLCSVTKSAPCIIDGEITDDRMCSAGIPGILVSDVCCPTSCGSCGGT 306 QTC L G CC C CGGSGCS G+G CCTSD+ +G C SAPC+++ + S G GIL DVCC CG+CGG+ Sbjct: 19 QTCDGILKGI----YCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGS 108
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 2.730e-13 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 4 DDFLHHRTAQTCSNGLPGFEAS--DVCCPLSCGRCGGSGCSQLG--EGCCTSDVKDSGDLCSVTKSAPCIIDG 210 D F+ C+NG+PG E++ +VCCP SCG CGG GC + G + CCT+++ D G CSVT +APC +DG Sbjct: 1166 DQFMLKGQFMWCTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAADECCTTEIMDYGQPCSVTGTAPCYLDG 1238
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Match: A0A812XTL0_SYMPI (Thsd7aa protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XTL0_SYMPI) HSP 1 Score: 72.4 bits (176), Expect = 1.310e-12 Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1 Query: 37 CSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEG---CCTSDVKDSGDLCSVTKSAPCIIDGEITDDRMCSAGIPGILVSDVCCPTSCGSCGG 303 CS G+P + VCCP SCG CGG C+ L G CC ++ ++G CS APC++ + D +C GIP I V CCP+ CG CGG Sbjct: 10 CSQGIP---SRAVCCPSSCGTCGGPICALLPGGSNSCCFVNILETGRECSTEVGAPCVVANGLNADVVCD-GIPSITV---CCPSDCGGCGG 94 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig89.17919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig89.17919.1 >prot_L-elsbetiae_contig89.17919.1 ID=prot_L-elsbetiae_contig89.17919.1|Name=mRNA_L-elsbetiae_contig89.17919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp MDDFLHHRTAQTCSNGLPGFEASDVCCPLSCGRCGGSGCSQLGEGCCTSDback to top mRNA from alignment at L-elsbetiae_contig89:2190..2644- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig89.17919.1 ID=mRNA_L-elsbetiae_contig89.17919.1|Name=mRNA_L-elsbetiae_contig89.17919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig89:2190..2644- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig89:2190..2644- >mRNA_L-elsbetiae_contig89.17919.1 ID=mRNA_L-elsbetiae_contig89.17919.1|Name=mRNA_L-elsbetiae_contig89.17919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig89:2190..2644- (Laminarionema elsbetiae ELsaHSoW15)back to top |