mRNA_L-elsbetiae_contig8894.17915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8894.17915.1
Unique NamemRNA_L-elsbetiae_contig8894.17915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8894.17915.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.040e-15
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MATTCDVSFDEMAVALSYISLGGAAAAPASSARGLPSLAPVKKDSK 138
            MAT CD+SFDEMA+ALSYISLGG AAAPASSARGLPSLAPVK++ K
Sbjct:    1 MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKK 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8894.17915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFV9_9PHAE2.040e-1584.78EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8894contigL-elsbetiae_contig8894:5130..5306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D8LCD3
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG2092@1,KOG1668@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.9947937-CDS-L-elsbetiae_contig8894:5129..53061622816965.9947937-CDS-L-elsbetiae_contig8894:5129..5306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8894 5130..5306 +
1691683947.3357918-CDS-L-elsbetiae_contig8894:5129..53061691683947.3357918-CDS-L-elsbetiae_contig8894:5129..5306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8894 5130..5306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8894.17915.1prot_L-elsbetiae_contig8894.17915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8894 5130..5306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8894.17915.1

>prot_L-elsbetiae_contig8894.17915.1 ID=prot_L-elsbetiae_contig8894.17915.1|Name=mRNA_L-elsbetiae_contig8894.17915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MATTCDVSFDEMAVALSYISLGGAAAAPASSARGLPSLAPVKKDSKKGSK
KKAAAADDD
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mRNA from alignment at L-elsbetiae_contig8894:5130..5306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8894.17915.1 ID=mRNA_L-elsbetiae_contig8894.17915.1|Name=mRNA_L-elsbetiae_contig8894.17915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig8894:5130..5306+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTACCACCTGCGACGTTTCGTTCGATGAGATGGCAGTTGCCCTGAG
CTACATTTCGCTCGGAGGAGCAGCGGCCGCACCGGCAAGTTCCGCAAGAG
GGCTCCCCTCTTTGGCGCCTGTCAAGAAGGACAGCAAGAAAGGCAGCAAG
AAGAAGGCTGCTGCAGCGGACGATGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8894:5130..5306+

>mRNA_L-elsbetiae_contig8894.17915.1 ID=mRNA_L-elsbetiae_contig8894.17915.1|Name=mRNA_L-elsbetiae_contig8894.17915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig8894:5130..5306+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTACCACCTGCGACGTTTCGTTCGATGAGATGGCAGTTGCCCTGAG
CTACATTTCGCTCGGAGGAGCAGCGGCCGCACCGGCAAGTTCCGCAAGAG
GGCTCCCCTCTTTGGCGCCTGTCAAGAAGGACAGCAAGAAAGGCAGCAAG
AAGAAGGCTGCTGCAGCGGACGATGACATGGCTACCACCTGCGACGTTTC
GTTCGATGAGATGGCAGTTGCCCTGAGCTACATTTCGCTCGGAGGAGCAG
CGGCCGCACCGGCAAGTTCCGCAAGAGGGCTCCCCTCTTTGGCGCCTGTC
AAGAAGGACAGCAAGAAAGGCAGCAAGAAGAAGGCTGCTGCAGCGGACGA
TGAC
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