mRNA_L-elsbetiae_contig8892.17913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8892.17913.1
Unique NamemRNA_L-elsbetiae_contig8892.17913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8892.17913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8892contigL-elsbetiae_contig8892:1957..3000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1014
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8892.17913.1prot_L-elsbetiae_contig8892.17913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8892 2386..3000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.9063296-UTR-L-elsbetiae_contig8892:1956..22871622816965.9063296-UTR-L-elsbetiae_contig8892:1956..2287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8892 1957..2287 +
1691683947.2890494-UTR-L-elsbetiae_contig8892:1956..22871691683947.2890494-UTR-L-elsbetiae_contig8892:1956..2287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8892 1957..2287 +
1622816965.919209-UTR-L-elsbetiae_contig8892:2317..23851622816965.919209-UTR-L-elsbetiae_contig8892:2317..2385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8892 2318..2385 +
1691683947.3006272-UTR-L-elsbetiae_contig8892:2317..23851691683947.3006272-UTR-L-elsbetiae_contig8892:2317..2385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8892 2318..2385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.9338317-CDS-L-elsbetiae_contig8892:2385..30001622816965.9338317-CDS-L-elsbetiae_contig8892:2385..3000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8892 2386..3000 +
1691683947.3106537-CDS-L-elsbetiae_contig8892:2385..30001691683947.3106537-CDS-L-elsbetiae_contig8892:2385..3000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8892 2386..3000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8892.17913.1

>prot_L-elsbetiae_contig8892.17913.1 ID=prot_L-elsbetiae_contig8892.17913.1|Name=mRNA_L-elsbetiae_contig8892.17913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MLSLARSHPPPVHLDRTCPLCPLPKVLAHMHRFLQREDVLGALVGGSPSG
DATAAHNDNAPAGPPPVPGGGEGSGGAAPLPAAESADGSRAAPSSAGEGA
ESAGAGLEAEEDTAAVAATPPPTSTTKGAGSGSGSGNRKAPSTTGGRGRG
RSSPSGKAPGGASGRGSENRASPASKKDAAAAAAAAATGADPSKGSPRAD
GGAVG
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mRNA from alignment at L-elsbetiae_contig8892:1957..3000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8892.17913.1 ID=mRNA_L-elsbetiae_contig8892.17913.1|Name=mRNA_L-elsbetiae_contig8892.17913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig8892:1957..3000+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATTCGGGCCACCATTGGTGGTCATTGCCGACTACCGTGTGCGGTGTT
TGTACCCACGCGTCGTGCCGGCTTCCGTGCCCTCCGCTCTTTTCAGCCGC
GTGTGTCTGTTGTGTTTGTGGTGTGTTGTCCTGCTGCTGCTGCCGCGCCA
CGCTTGCTTTGTGCGCCCCCCGGCTCCGAACCACCAACCGCCCACCCGTT
GGTGACCCGCTCGCCCGGCCCACTCGCCCAGCTTCTCTCTCCCTTGCCGT
GCCAGGAGGAGAGGTCTCTTCGCTCGCTTGAGAGAGCGAAATAATTTCGG
TTGTGGGTTTCAACCCGCGTTGTAGGAGGAGGTCTCTTCGCTCGCTTCGT
TGTAGGAGGAGGTCTCTTCGCTCGCTTGAGAAGAGCGAAATAATTTCGGT
CTGTGGTTTTTTCAACGCGCGTTTTGTTTATGTTGTCGCTCGCTCGCTCG
CACCCGCCACCTGTGCACCTCGATCGAACTTGCCCGCTGTGCCCGCTGCC
CAAGGTCCTGGCGCACATGCACCGGTTCCTGCAGCGCGAGGACGTGCTCG
GTGCGTTGGTTGGCGGCAGCCCGAGCGGCGATGCCACCGCCGCCCACAAC
GACAACGCTCCCGCCGGCCCCCCTCCGGTGCCGGGGGGTGGGGAGGGTAG
CGGTGGTGCCGCGCCCCTGCCCGCCGCCGAGAGCGCGGATGGCTCCCGAG
CTGCTCCCAGCTCAGCCGGGGAGGGCGCCGAGTCTGCCGGAGCGGGGCTG
GAGGCGGAGGAGGACACGGCGGCGGTGGCGGCGACACCACCCCCCACGAG
CACCACCAAAGGAGCCGGCAGCGGCAGCGGCAGCGGCAATAGAAAAGCAC
CTTCGACGACAGGAGGAAGAGGAAGGGGCAGGTCTTCCCCGTCGGGAAAG
GCGCCTGGGGGGGCGTCCGGACGCGGCAGCGAGAACAGGGCGTCCCCGGC
GTCAAAGAAGGACGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGGGGCCG
ACCCTTCCAAGGGCTCGCCGCGCGCGGACGGGGGGGCGGTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8892:1957..3000+

>mRNA_L-elsbetiae_contig8892.17913.1 ID=mRNA_L-elsbetiae_contig8892.17913.1|Name=mRNA_L-elsbetiae_contig8892.17913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig8892:1957..3000+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTCGCTCGCTCGCTCGCACCCGCCACCTGTGCACCTCGATCGAAC
TTGCCCGCTGTGCCCGCTGCCCAAGGTCCTGGCGCACATGCACCGGTTCC
TGCAGCGCGAGGACGTGCTCGGTGCGTTGGTTGGCGGCAGCCCGAGCGGC
GATGCCACCGCCGCCCACAACGACAACGCTCCCGCCGGCCCCCCTCCGGT
GCCGGGGGGTGGGGAGGGTAGCGGTGGTGCCGCGCCCCTGCCCGCCGCCG
AGAGCGCGGATGGCTCCCGAGCTGCTCCCAGCTCAGCCGGGGAGGGCGCC
GAGTCTGCCGGAGCGGGGCTGGAGGCGGAGGAGGACACGGCGGCGGTGGC
GGCGACACCACCCCCCACGAGCACCACCAAAGGAGCCGGCAGCGGCAGCG
GCAGCGGCAATAGAAAAGCACCTTCGACGACAGGAGGAAGAGGAAGGGGC
AGGTCTTCCCCGTCGGGAAAGGCGCCTGGGGGGGCGTCCGGACGCGGCAG
CGAGAACAGGGCGTCCCCGGCGTCAAAGAAGGACGCGGCGGCGGCGGCGG
CGGCGGCGGCGACGGGGGCCGACCCTTCCAAGGGCTCGCCGCGCGCGGAC
GGGGGGGCGGTCGGCATGTTGTCGCTCGCTCGCTCGCACCCGCCACCTGT
GCACCTCGATCGAACTTGCCCGCTGTGCCCGCTGCCCAAGGTCCTGGCGC
ACATGCACCGGTTCCTGCAGCGCGAGGACGTGCTCGGTGCGTTGGTTGGC
GGCAGCCCGAGCGGCGATGCCACCGCCGCCCACAACGACAACGCTCCCGC
CGGCCCCCCTCCGGTGCCGGGGGGTGGGGAGGGTAGCGGTGGTGCCGCGC
CCCTGCCCGCCGCCGAGAGCGCGGATGGCTCCCGAGCTGCTCCCAGCTCA
GCCGGGGAGGGCGCCGAGTCTGCCGGAGCGGGGCTGGAGGCGGAGGAGGA
CACGGCGGCGGTGGCGGCGACACCACCCCCCACGAGCACCACCAAAGGAG
CCGGCAGCGGCAGCGGCAGCGGCAATAGAAAAGCACCTTCGACGACAGGA
GGAAGAGGAAGGGGCAGGTCTTCCCCGTCGGGAAAGGCGCCTGGGGGGGC
GTCCGGACGCGGCAGCGAGAACAGGGCGTCCCCGGCGTCAAAGAAGGACG
CGGCGGCGGCGGCGGCGGCGGCGGCGACGGGGGCCGACCCTTCCAAGGGC
TCGCCGCGCGCGGACGGGGGGGCGGTCGGC
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