mRNA_L-elsbetiae_contig8889.17910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8889.17910.1
Unique NamemRNA_L-elsbetiae_contig8889.17910.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8889.17910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8889contigL-elsbetiae_contig8889:1305..2005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.6877484-CDS-L-elsbetiae_contig8889:1304..14241622816965.6877484-CDS-L-elsbetiae_contig8889:1304..1424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8889 1305..1424 +
1691683947.1100247-CDS-L-elsbetiae_contig8889:1304..14241691683947.1100247-CDS-L-elsbetiae_contig8889:1304..1424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8889 1305..1424 +
1622816965.6989365-CDS-L-elsbetiae_contig8889:1845..20041622816965.6989365-CDS-L-elsbetiae_contig8889:1845..2004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8889 1846..2004 +
1691683947.1242564-CDS-L-elsbetiae_contig8889:1845..20041691683947.1242564-CDS-L-elsbetiae_contig8889:1845..2004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8889 1846..2004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8889.17910.1prot_L-elsbetiae_contig8889.17910.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8889 1305..2004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8889.17910.1

>prot_L-elsbetiae_contig8889.17910.1 ID=prot_L-elsbetiae_contig8889.17910.1|Name=mRNA_L-elsbetiae_contig8889.17910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
TGFPNTTTGLYALTGVDLPPSGSSGEFDGLMLDPGLLRIYAFSYDGIFVK
EYNEGDGETLQSQNAGTGLFELVAGEEGAERVVRSAISVNRVI
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mRNA from alignment at L-elsbetiae_contig8889:1305..2005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8889.17910.1 ID=mRNA_L-elsbetiae_contig8889.17910.1|Name=mRNA_L-elsbetiae_contig8889.17910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=701bp|location=Sequence derived from alignment at L-elsbetiae_contig8889:1305..2005+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGTTTCCGAACACAACGACCGGCCTCTACGCGCTTACCGGGGTCGA
TCTGCCACCATCGGGGTCAAGCGGAGAATTTGATGGATTGATGCTAGACC
CTGGCCTTCTAAGGATATATGTAAGTTGCTTGCAACAAGTCAGGGTCCTC
CTAGTTGTTGTTGTTGTAGTTGTTGTCTTCATATTAAAAGTCGTTATGAT
CTCTCTGCCCAGTATCTCAACCTGCTCGTACTGATCCAATACTTGACGCG
GTCGATCCTCTTGGGCACACAGGCTAGATTTCCCTTCAAGGATACGTACA
CTGAAACATAAAAAATGGACCCAAACCATCGTGCCATGTGTACATTATTG
TGTGAACAGAGAGAGCCGAAAGCAGTCAAACCGTACAAAATGTCGTTGCC
TTGAGGTTGGCTACGGCTGGGCGAGCCAGCCTAGCTCCCTTCAAAGCGCG
GACATTCCGAACAAATGGGTTCTACAGTAGACTAGTGTAGTACCTTTCCT
TATCGAATGCTCTTGCCTTAAACACGCCACACTGTCTGTAGGCGTTCAGC
TATGATGGCATCTTCGTGAAGGAGTACAACGAGGGCGATGGTGAGACACT
ACAGTCCCAAAACGCCGGCACGGGGTTGTTCGAATTAGTGGCTGGCGAAG
AAGGGGCGGAACGGGTGGTCCGATCTGCAATCAGCGTCAACCGGGTCATA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8889:1305..2005+

>mRNA_L-elsbetiae_contig8889.17910.1 ID=mRNA_L-elsbetiae_contig8889.17910.1|Name=mRNA_L-elsbetiae_contig8889.17910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig8889:1305..2005+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGGTTTCCGAACACAACGACCGGCCTCTACGCGCTTACCGGGGTCGA
TCTGCCACCATCGGGGTCAAGCGGAGAATTTGATGGATTGATGCTAGACC
CTGGCCTTCTAAGGATATATACGGGGTTTCCGAACACAACGACCGGCCTC
TACGCGCTTACCGGGGTCGATCTGCCACCATCGGGGTCAAGCGGAGAATT
TGATGGATTGATGCTAGACCCTGGCCTTCTAAGGATATATGCGTTCAGCT
ATGATGGCATCTTCGTGAAGGAGTACAACGAGGGCGATGGTGAGACACTA
CAGTCCCAAAACGCCGGCACGGGGTTGTTCGAATTAGTGGCTGGCGAAGA
AGGGGCGGAACGGGTGGTCCGATCTGCAATCAGCGTCAACCGGGTCATAG
CGTTCAGCTATGATGGCATCTTCGTGAAGGAGTACAACGAGGGCGATGGT
GAGACACTACAGTCCCAAAACGCCGGCACGGGGTTGTTCGAATTAGTGGC
TGGCGAAGAAGGGGCGGAACGGGTGGTCCGATCTGCAATCAGCGTCAACC
GGGTCATA
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