mRNA_L-elsbetiae_contig8885.17908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8885.17908.1
Unique NamemRNA_L-elsbetiae_contig8885.17908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: D7FMJ3_ECTSI (Similar to Y54G2A.4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMJ3_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.880e-50
Identity = 92/121 (76.03%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 RLLLMLLVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIMLGPVGSTSVSPQDRLVPVFGILAGLTGVATLVQVLLLQREREMGNAYGGSGAMAPLSKETKGREGTGPS 363
            +LL M LVYEACIGLY PA+ATCRSKYIDDR+RGTVMN+TRVP+ +VAA +M GPV S+SVS  D  V  FGILAGL GVATL+QVLLLQREREMG AYGGSGAMA L KE +GREGTG S
Sbjct:  413 KLLAMFLVYEACIGLYLPAIATCRSKYIDDRIRGTVMNLTRVPVYVVAAFLMHGPVASSSVSEDDEGVSAFGILAGLMGVATLIQVLLLQREREMGIAYGGSGAMASLPKERRGREGTGSS 533
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A7S2XVJ9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.050e-11
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    4 LLLMLLVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIMLGPVGSTSVSPQDRLVPVFGILAGLTGVATLVQVLLLQ 270
            LLL  +V+EA +G+Y+PA+   R+KYI + VR TVMNI R+ +NL+  ++++GPVG+       R + +F I AG   +A+  Q + L+
Sbjct:   70 LLLAFVVFEAVVGVYFPAIGLLRAKYIPEGVRATVMNIFRILLNLIVVIMLVGPVGADCSMDMKRPI-IFTIGAGGLALASFFQWMCLK 157
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A7S2LNM0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LNM0_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 3.160e-10
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIMLGPVGSTSVSPQDRLVPVFGILAG 228
            L++EAC+G+Y+P+M T +S  + + VRGTV NI RVP+N +  L++LG +   S+    R+  V  ++AG
Sbjct:   16 LLFEACVGMYFPSMGTIKSTVVPEHVRGTVYNIYRVPLNAIVVLLLLGDI---SLKACFRISAVMMLIAG 82
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: UPI00106A47B7 (molybdate-anion transporter-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A47B7)

HSP 1 Score: 64.3 bits (155), Expect = 1.510e-9
Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIML 159
            LV+E C+G+++PAMAT R KY+ +  R T+MNI R+P+NL+  L++L
Sbjct:  341 LVFECCVGIFWPAMATMRGKYVPEETRATIMNIFRIPLNLIVILVLL 387
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A815TF63_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TF63_ADIRI)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-9
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIML 159
            L++E CIGL++PAMAT RSKY+ +  R TVMN  R+P+NL+  +I+L
Sbjct:  349 LIFEFCIGLFWPAMATMRSKYVPEEARATVMNYIRIPLNLIVVVILL 395
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A1I8H276_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8H276_9PLAT)

HSP 1 Score: 63.9 bits (154), Expect = 1.960e-9
Identity = 24/46 (52.17%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIM 156
            LV+E C+GL++PA+ T RSKY+ D +R T+MN+ R+P+NLV  +I+
Sbjct:  283 LVFECCVGLFWPAIGTMRSKYVPDSIRATIMNLFRIPLNLVVVIIL 328
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BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A267GA72_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GA72_9PLAT)

HSP 1 Score: 63.9 bits (154), Expect = 2.070e-9
Identity = 24/46 (52.17%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIM 156
            LV+E C+GL++PA+ T RSKY+ D +R T+MN+ R+P+NLV  +I+
Sbjct:  351 LVFECCVGLFWPAIGTMRSKYVPDSIRATIMNLFRIPLNLVVVIIL 396
[Close]
BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A1I8HK37_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HK37_9PLAT)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-9
Identity = 24/46 (52.17%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIM 156
            LV+E C+GL++PA+ T RSKY+ D +R T+MN+ R+P+NLV  +I+
Sbjct:  383 LVFECCVGLFWPAIGTMRSKYVPDSIRATIMNLFRIPLNLVVVIIL 428
[Close]
BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A820JQV8_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820JQV8_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 2.390e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIML 159
            LV+E C+G+++PAMAT RSKY+ +  R TVMN  R+P+NL+  +I+L
Sbjct:  162 LVFEFCVGVFWPAMATMRSKYVPEEARATVMNYFRIPLNLIVVIILL 208
[Close]
BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Match: A0A816FXN0_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A816FXN0_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 2.830e-9
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 LVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIML 159
            LV+E CIG+++PAMAT RSKY+ +  R TVMN  R+P+NL+  +I+L
Sbjct:  349 LVFEFCIGVFWPAMATMRSKYVPEEARATVMNYFRIPLNLIVVIILL 395
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8885.17908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMJ3_ECTSI1.880e-5076.03Similar to Y54G2A.4 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2XVJ9_9STRA1.050e-1140.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2LNM0_9DINO3.160e-1041.43Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
UPI00106A47B71.510e-951.06molybdate-anion transporter-like isoform X1 n=2 Ta... [more]
A0A815TF63_ADIRI1.520e-955.32Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A1I8H276_9PLAT1.960e-952.17Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A267GA72_9PLAT2.070e-952.17Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
A0A1I8HK37_9PLAT2.090e-952.17Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A820JQV8_9BILA2.390e-953.19Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A816FXN0_9BILA2.830e-955.32Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8885contigL-elsbetiae_contig8885:516..2471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D7FMJ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.molybdate ion transmembrane transporter activity
EggNOG OGsKOG4332@1,KOG4332@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size369
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8885.17908.1prot_L-elsbetiae_contig8885.17908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8885 528..2471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.460985-UTR-L-elsbetiae_contig8885:515..5271622816965.460985-UTR-L-elsbetiae_contig8885:515..527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8885 516..527 +
1691683946.9256072-UTR-L-elsbetiae_contig8885:515..5271691683946.9256072-UTR-L-elsbetiae_contig8885:515..527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8885 516..527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.472844-CDS-L-elsbetiae_contig8885:527..6371622816965.472844-CDS-L-elsbetiae_contig8885:527..637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 528..637 +
1691683946.9388478-CDS-L-elsbetiae_contig8885:527..6371691683946.9388478-CDS-L-elsbetiae_contig8885:527..637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 528..637 +
1622816965.4858966-CDS-L-elsbetiae_contig8885:1648..17811622816965.4858966-CDS-L-elsbetiae_contig8885:1648..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 1649..1781 +
1691683946.9497433-CDS-L-elsbetiae_contig8885:1648..17811691683946.9497433-CDS-L-elsbetiae_contig8885:1648..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 1649..1781 +
1622816965.5020642-CDS-L-elsbetiae_contig8885:2357..24711622816965.5020642-CDS-L-elsbetiae_contig8885:2357..2471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 2358..2471 +
1691683946.9591837-CDS-L-elsbetiae_contig8885:2357..24711691683946.9591837-CDS-L-elsbetiae_contig8885:2357..2471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8885 2358..2471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8885.17908.1

>prot_L-elsbetiae_contig8885.17908.1 ID=prot_L-elsbetiae_contig8885.17908.1|Name=mRNA_L-elsbetiae_contig8885.17908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MLLVYEACIGLYYPAMATCRSKYIDDRVRGTVMNITRVPMNLVAALIMLG
PVGSTSVSPQDRLVPVFGILAGLTGVATLVQVLLLQREREMGNAYGGSGA
MAPLSKETKGREGTGPST*
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mRNA from alignment at L-elsbetiae_contig8885:516..2471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8885.17908.1 ID=mRNA_L-elsbetiae_contig8885.17908.1|Name=mRNA_L-elsbetiae_contig8885.17908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig8885:516..2471+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTACTGTTGATGCTCCTGGTGTATGAGGCGTGTATCGGACTGTACTA
TCCTGCCATGGCGACGTGCCGGTCCAAGTACATCGACGATCGGGTTCGAG
GCACCGTCATGAACATCACCAGGTACGAGCCGTCGCCGAATGAAGTCTTG
TCTCGTGCGATCGTGCGTGTCGTGTATCAATCACGCTGTTAACGACTGTA
ACTGCTGTGTTATCCTTGTGTTTTTTCAATGTTTGAAAATGAACAGCATG
GCAACATGCTATCAAAGGGTAAATCGCATGTGTGAGCCAGCTCCCCCCCC
CCATCAATACCCACGTTTTACGCGCTGAACCATTTCCAGATATGTGCTGC
GTGATATGGAGTTCACCACCCCGCCTAACCTCAGGCTCACACTGTCGATT
GAACCCATGAAAGCAATATTGCAATGTTGGGCTTAGTAGCGTGGTGACGA
GCCCTACTTAGGGTATTTAATCCGGTGCCTTAAGGGTATTCATCTCTCGG
GTAGCTTTAGTATACTACGACTTTCGATACCCCGACCCGACCCCTCGGGT
TATCCAGCTTTTGTACGTAAGGCTTTCGATACTCTACCCGCCCGGGTAAA
AGTACGTACCGGGGTTTGGACCTGTAGCCCAACCCGCACGGGTAGAGCAC
TGGGTAGGGTATACTCTACTCTCGAGTAGATTTAGTATGTATGTACACTC
GGTACTCTGCCCGACCCCCTAACTCTACCCACTGGTAGGTCTGGCTTGTA
GTACGCTACTCTCGAGTACCCTACCCTAATTAACGATTTAGGTATGTACA
TACATACTTGCTCGCAATATTGTACGTAGGGACTAACTCCACCATACAGA
TGTTGTAGCGTGACAGCAGTACAGTGTGGTGTACAAATGTGTAAAGGTAA
AGTAGAGTTTGCTATTTATCAGGTCAAATACTGATACCACGATAACAAAT
CCAACCAGCTTCGATACACGAAGGGTTCTAGTGATGCAAAATGAGGTAGA
AGTATGTCCTGTACTGCGTGCCTGTCTGCGTGGCTGACTCGTGACGACAT
CCGGTATGTTATGTGTGGCGTCGCTGTTTTTTTTCCCGACTAATCCTGTC
GTGTTGTCTCCTTCTCTCGCAACTCACACACAGAGTACCAATGAACCTCG
TGGCAGCTCTCATAATGCTAGGACCCGTGGGAAGTACCTCCGTATCTCCG
CAGGACCGACTCGTGCCGGTGTTCGGGATTCTGGCCGGTCTCACAGGGGT
CGCCACGCTCGTACAGGTGGGTCTGGGTCGGAAAACACAGATGCACCGCC
GCACAACAGTGCTTCTGCGGACAGCAGTGTGCGTTCGTATCTCCTACCTG
ATTCTCGAACTCATCTGGGGGTAGTAAGAATGTGTTCACTGTCGTTGCTG
CTCGTGATCGTCGGTCGATAGCAACACTGGCAGCGTACGTTGTGGGATTG
ATTCTGCAGTCCTTCGAGCTGTCGTTGCGGCGACCATTTCACTTCGGAAA
GGACTGGAGGGGGGGGGGGGGGGGGGGTCTTATGTAGCTAGCTTATCGGT
TGTGGATGGATTGCTTGAATGGGGTTGGAATTCAACAGTGGACGGGCTAA
CATTGTAGGGGGGTCATGCTGTTTTCCTTCGCACGACGCTGTAGCCACTC
TACAGACGAAGGATGAACAGTTACGAATGCCGTCGGGTGTCGATAGACAA
ACAGCCCCCGTCGCTATCCGCATCAACCGCTTGTTTTCTAGCCTCCCACA
GAGATCACCAACACAACTTCAGAGCATACCGTGCTCCGATTCGATAGAAG
TACGTTGAAACCCTAACCGCGCTATTTTAACGCCTGCTGCAGGTGCTCCT
GCTTCAGCGAGAAAGGGAAATGGGGAACGCTTACGGCGGATCTGGAGCCA
TGGCACCGCTTTCGAAGGAGACGAAAGGCAGAGAAGGCACGGGCCCCTCG
ACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8885:516..2471+

>mRNA_L-elsbetiae_contig8885.17908.1 ID=mRNA_L-elsbetiae_contig8885.17908.1|Name=mRNA_L-elsbetiae_contig8885.17908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig8885:516..2471+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCTGGTGTATGAGGCGTGTATCGGACTGTACTATCCTGCCATGGC
GACGTGCCGGTCCAAGTACATCGACGATCGGGTTCGAGGCACCGTCATGA
ACATCACCAGATGCTCCTGGTGTATGAGGCGTGTATCGGACTGTACTATC
CTGCCATGGCGACGTGCCGGTCCAAGTACATCGACGATCGGGTTCGAGGC
ACCGTCATGAACATCACCAGAGTACCAATGAACCTCGTGGCAGCTCTCAT
AATGCTAGGACCCGTGGGAAGTACCTCCGTATCTCCGCAGGACCGACTCG
TGCCGGTGTTCGGGATTCTGGCCGGTCTCACAGGGGTCGCCACGCTCGTA
CAGAGTACCAATGAACCTCGTGGCAGCTCTCATAATGCTAGGACCCGTGG
GAAGTACCTCCGTATCTCCGCAGGACCGACTCGTGCCGGTGTTCGGGATT
CTGGCCGGTCTCACAGGGGTCGCCACGCTCGTACAGGTGCTCCTGCTTCA
GCGAGAAAGGGAAATGGGGAACGCTTACGGCGGATCTGGAGCCATGGCAC
CGCTTTCGAAGGAGACGAAAGGCAGAGAAGGCACGGGCCCCTCGACTTGA
GTGCTCCTGCTTCAGCGAGAAAGGGAAATGGGGAACGCTTACGGCGGATC
TGGAGCCATGGCACCGCTTTCGAAGGAGACGAAAGGCAGAGAAGGCACGG
GCCCCTCGACTTGA
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